| Commit message (Collapse) | Author | Age | Files | Lines |
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instead of INCLUDES. Update automake to 1.14.1
h5committest
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Remove all traces of MPI-POSIX VFD and GPFS detection/code.
Remove remaining traces of stream VFD.
Remove testpar/t_posix_compliant test (it's not actually verifying anything).
Clean up H5D__mpio_opt_possible() further.
Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).
A few other small code cleanups.
Tested on:
Mac OSX/64 10.9.2 (amazon) w/parallel & serial
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KitWare recommendations: Change CMake commands to lower case.
Remove INCLUDE_DIRECTORIES in src for target level includes.
Change ADD_DEFINITIONS package debug defines into CMake option.
Remove -DNDEBUG
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Tested: jam (only verify help message is correct and --script is invoked
correctly.)
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Changed to use the quick steps described in INSTALL_CMake.txt.
Previous version is available by --old.
Added a help page to explain how to use.
Added a fix to figure out the current HDF5 version and use that to find the
correct file for install. (Still need to figure out the platform name.)
Tested: Jam and Koala
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and never regenerated. The code for scaleoffset continued to change and the number of params for scaleoffset changed from 7 to 20 on the checkin of 23 Mar 05, rev 10384.
The h5dump tests only looked at headers and never the data. Data reads would fail with invalid number of params (7 expected 20).
Regenerated file and replacement ddls updated.
New h5dump test will be added to read the data.
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Tested: cygwin
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Updated CDash site name in cmake script.
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Clean up warnings, switch library code to use Standard C/POSIX wrapper
macros, remove internal calls to API routines, update checkapi and checkposix
scripts.
Tested on:
Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
Big-Endian Linux/64 (ostrich)
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Tested: jam
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Bring changes from Coverity branch to the trunk:
r20612:
Changed string functions to versions with string length to fix coverity issues
922, 942 and 943.
r20614:
Use HDsnprintf. --gh
r20675:
Fix for coverity #1714 due to the fix for #810.
Use HDfree() instead of H5MM_xfree().
r20678:
Repaired coverity issue #598 -- failure to check return value from a
call to fstat(), or to tidy up in the event of failure.
r20679:
Use HDstrncpy. --gh
r20681:
Use HDstrncat and HDstrncpy. --gh
Tested on:
Mac OSX/64 10.8.2 (amazon) w/Debug, etc.
(too minor to require h5committest)
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Change configure to test the result of the CHECK HEADERS call before checking for the library.
Tested: local linux, h5committest
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Description:
Adds 2 new API functions, H5Dscatter and H5Dgather. H5Dscatter retrieves data
from a specified callback function and scatters it into a selection, defined by
a supplied dataspace, within a supplied memory buffer. H5Dgather gathers data
from a selection within a supplied memory buffer and passes it in a contiguous
form to a supplied callback function. Added tests for these functions
Tested: jam, ostrich, koala (h5committest); ummon
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Set it NOT to submit result to the CDASH.
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all THG unix
platforms except Linew (SunOS).
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send debug output
to the standout. This keeps command output terse and easier to tell if it
passes or not.
Added time stamps printing.
Added exit code and command executation summary.
All these will make it easier for user to tell if the command succeeds or not.
Tested: {jam,koala,ostrich} all passed. {Linew,fred,duck,owl} failed.
The failure is the cmake process, not cmakehdf5 itself.
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This is an initial implementation and is known to work in
Jam only. More porting is in progress.
Tested: Jam
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Visual Studio that were removed.
Tested on jam.
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Add encode/decode API routines for property lists: H5Pencode/H5Pdecode.
Tested on:
FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN,
in production mode
Mac OS X/32 10.7.3 (amazon) in debug mode
Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
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HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access
Description:
Added H5Pget_mpio_no_collective_cause() function that retrive reasons why the collective I/O was broken during Read/Write IO access.
Reasons to break collective I/O:
- SET_INDEPENDENT
- DATATYPE_CONVERSION
- DATA_TRANSFORMS
- MPIPOSIX
- NOT_SIMPLE_OR_SCALAR_DATASPACES (NULL Space)
- POINT_SELECTIONS
- NOT_CONTIGUOUS_OR_CHUNKED_DATASET (Compact or External-Storage)
- FILTERS
Tested:
jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
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Tested: h5committest
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autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files.
Tested: h5committest
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libtool 2.4.2
Tested THG machines.
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Add 'H5O_mcdt_search_cb_t' to bin/trace script and re-run the
bin/reconfigure script.
Tested on:
FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
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Merge "file image" changes from feature branch back to trunk.
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug
(h5committest upcoming)
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Update tracing information with new types introduced in "actual I/O mode"
query routines.
Tested on:
bin/reconfigure on jam
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parameter, which it can't process. This allows the correct H5TRACE8 trace function to be added to H5Epush2. Tested on jam (simple change).
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Tweak make_vers script so that it indents preprocessor commands inside
#ifdefs, is more forgiving and informative about the input file's prefix, and
is better parameterized with the global variables at the beginning of the
script. When major versions are branched from the trunk, the $max_idx value
should be the only value that needs to be changed in the version of the script
on the trunk.
Changes to H5version.h file are just indention.
Tested on:
Mac OS X/32 10.6.8 (amazon)
(too minor to require h5committest)
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`date` form.
Tested: Jam by running bin/release and eyeballed the new date format.
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Test scripts sometimes need to filter some system-specific messages from the
actual output so that it can match the correct expected output. These filtering
functions, ususally called "STDOUT_FILTER()" and "STDERR_FILTER()" were being
repeated in individual test scripts. This becomes a maintenance problem and
is error prone.
Solution:
Extract the two filter functions code to bin/output_filter.sh and then each
test script sources it in. This allows reuse of coding and is much easier to
maintain and to add new filtering.
Tested:
LLNL Zeus (linux64 cluster) and Dawndev (Blue-Gene cluster), both for serial
mode only.
--This line, and those below, will be ignored--
M tools/misc/testh5mkgrp.sh
M tools/h5dump/testh5dump.sh.in
M tools/h5diff/testh5diff.sh
M tools/h5copy/testh5copy.sh
M tools/h5ls/testh5ls.sh.in
M MANIFEST
A bin/output_filter.sh
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Teach the tracing script & routines about the 'unsigned long' and
'unsigned long long' types, so that the H5Pset_fapl_log() API routine gets
tracing information correct.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.6 (amazon) in debug mode
Mac OS X/32 10.6.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Mac OS X/32 10.6.6 (amazon) w/parallel, in debug mode
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The content of bin/config_para_ibm_sp.sh has been added to
release_docs/INSTALL_parallel long ago. Just got around to remove it.
Tested: no need since nothing refer to config_para_ibm_sp.sh except MANIFEST.
Ran bin/chkmanifest.
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(timestamp='2008-01-16', Rev. 1.361) from http://cvs.savannah.gnu.org/viewvc/config/config/.
Tested with h5committest on amani, heiwa, and jam and on linew.
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Tested with h5committest on amani, heiwa, and jam.
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Description:
In an AIX 6.1 system, configure --enable-shared could not build a shared
HDF5 library. The problem was because the version of config.guess was too
old to recongnize AIX 6.X and also configure.in had a local fix which did
not recognize AIX 6.X.
Solution:
1. Mike McGreevy updated bin/config.guess to handle AIX 6.X.
2 Albert fixed configure.in to recognize AIX 6.X.
Note that though HDF5 can build shared lib for AIX 6.X systems
but it still could not install the proper library as in AIX 5.X
systems. Also, bin/config.sub should be updated too.
Tested: BP which is the AIX 6.1 system that exposed this problem.
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Update bin/chkconfigure to reflect version 2.67 of Autoconf
Tested:
ran bin/chkconfigure on jam
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and m4 to version 1.4.14. Also added m4 directory for m4 macros according to autoconf suggestion.
Tested with h5committest on amani, jam, and heiwa, and on linew.
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Cleaned up the code a bit by:
1. It used to that -xxx options must be at the beginning such that
"buildhdf5 --disable-shared -config" was an error. Now -xxx options
can appear anywhere in the command options.
2. Eliminate the need of variables $CONFIG_CXX, $CONFIG_FORTRAN,
$CONFIG_PARALLEL by appending their values to $CONFIG_OP directly.
3. Also append $WITH_SZLIB to $CONFIG_OP when it is defined, not later.
4. Call CONFIG directly instead of setting up $CONFIGURE.
5. Removed the last TIMESTAMP since "trap 0" will call QUIT which calls
TIMESTAMP already. This eliminated the extra timestamp when it finishes
normal.
tested:
Tested by hand since h5committest does not really test this command.
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the default on jam.
Tested on jam.
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Autotool Upgrade / Libtool Bug Fix
Description:
Updated autotools referenced in bin/reconfigure as follows:
Autoconf 2.64 --> Autoconf 2.65
Automake 1.11 --> Automake 1.11.1
Libtool 2.2.6a --> Libtool 2.2.6b-mcg
The referenced libtool version is a custom version of 2.2.6b. It
has been tweaked to fix a bug in libtool that occurs
when using PGI 10.0 compilers. A check incorrectly categorizes
the C++ compiler as version 1.0 instead of 10.0, and the link
line is subsequently set up incorrectly and fails to compile.
A patch has been made available and will be included in the next
release of libtool, but in the meantime I've applied the patch to a custom
installation as indicated above. This bin/reconfigure now references
the custom installation, and the resulting configure script will correctly
categorize the PGI 10.0 C++ compiler.
Ran bin/reconfigure to regenerate configure and makefiles.
Tested:
jam and amani with PGI 10.0 compilers.
h5committest
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