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* [svn-r24864] Description:Quincey Koziol2014-03-211-4/+1
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r24781] HDFFV-8700 -Allen Byrne2014-03-111-2/+2
| | | | | | | KitWare recommendations: Change CMake commands to lower case. Remove INCLUDE_DIRECTORIES in src for target level includes. Change ADD_DEFINITIONS package debug defines into CMake option. Remove -DNDEBUG
* [svn-r24617] Changed --old to --script as directed by Allen.Albert Cheng2014-01-071-4/+4
| | | | | Tested: jam (only verify help message is correct and --script is invoked correctly.)
* [svn-r24604] Feature: HDFFV-8336Albert Cheng2014-01-011-2/+119
| | | | | | | | | | Changed to use the quick steps described in INSTALL_CMake.txt. Previous version is available by --old. Added a help page to explain how to use. Added a fix to figure out the current HDF5 version and use that to find the correct file for install. (Still need to figure out the platform name.) Tested: Jam and Koala
* [svn-r24492] Correct autotools pathAllen Byrne2013-12-031-24/+18
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* [svn-r24467] tfilters.h5 was created and checked in on 21 Feb 05, rev 10060, ↵Allen Byrne2013-11-261-18/+24
| | | | | | | | and never regenerated. The code for scaleoffset continued to change and the number of params for scaleoffset changed from 7 to 20 on the checkin of 23 Mar 05, rev 10384. The h5dump tests only looked at headers and never the data. Data reads would fail with invalid number of params (7 expected 20). Regenerated file and replacement ddls updated. New h5dump test will be added to read the data.
* [svn-r24253] Add var for install fileAllen Byrne2013-10-021-3/+4
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* [svn-r24252] add log varsAllen Byrne2013-10-021-2/+14
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* [svn-r24251] Add packaging to processAllen Byrne2013-10-021-0/+13
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* [svn-r24007] Update configure to support 64-bit cygwinAllen Byrne2013-08-131-4/+4
| | | | Tested: cygwin
* [svn-r24003] Remove check for GetConsoleScreenBuffer in CYGWIN (false positive).Allen Byrne2013-08-131-2/+2
| | | | Updated CDash site name in cmake script.
* [svn-r23713] Description:Quincey Koziol2013-05-212-80/+131
| | | | | | | | | | Clean up warnings, switch library code to use Standard C/POSIX wrapper macros, remove internal calls to API routines, update checkapi and checkposix scripts. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN Big-Endian Linux/64 (ostrich)
* [svn-r23449] Update script for reporting errors from configure, build, test.Allen Byrne2013-03-251-3/+16
| | | | Tested: jam
* [svn-r23313] Description:Quincey Koziol2013-02-251-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring changes from Coverity branch to the trunk: r20612: Changed string functions to versions with string length to fix coverity issues 922, 942 and 943. r20614: Use HDsnprintf. --gh r20675: Fix for coverity #1714 due to the fix for #810. Use HDfree() instead of H5MM_xfree(). r20678: Repaired coverity issue #598 -- failure to check return value from a call to fstat(), or to tidy up in the event of failure. r20679: Use HDstrncpy. --gh r20681: Use HDstrncat and HDstrncpy. --gh Tested on: Mac OSX/64 10.8.2 (amazon) w/Debug, etc. (too minor to require h5committest)
* [svn-r23305] HDFFV-8257: szip still used even if headers are not found. ↵Allen Byrne2013-02-181-2/+7
| | | | | | Change configure to test the result of the CHECK HEADERS call before checking for the library. Tested: local linux, h5committest
* [svn-r23230] Purpose: Implement H5Dscatter and H5DgatherNeil Fortner2013-02-051-0/+2
| | | | | | | | | | | Description: Adds 2 new API functions, H5Dscatter and H5Dgather. H5Dscatter retrieves data from a specified callback function and scatters it into a selection, defined by a supplied dataspace, within a supplied memory buffer. H5Dgather gathers data from a selection within a supplied memory buffer and passes it in a contiguous form to a supplied callback function. Added tests for these functions Tested: jam, ostrich, koala (h5committest); ummon
* [svn-r23197] prints out what and where the log files are.Albert Cheng2013-01-231-4/+26
| | | | Set it NOT to submit result to the CDASH.
* [svn-r23167] Removed the working in Jam only statement since it works for ↵Albert Cheng2013-01-161-10/+0
| | | | | | all THG unix platforms except Linew (SunOS).
* [svn-r23133] Force static builds on MAC machinesAllen Byrne2013-01-031-4/+13
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* [svn-r23131] Correct missing command nameAllen Byrne2013-01-021-7/+12
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* [svn-r23127] Add MAC options to script in IF(APPLE) block.Allen Byrne2013-01-021-1/+9
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* [svn-r23120] Removed -VV from the ctest command line so that it does not ↵Albert Cheng2012-12-271-1/+10
| | | | | | | | | | | | | | | send debug output to the standout. This keeps command output terse and easier to tell if it passes or not. Added time stamps printing. Added exit code and command executation summary. All these will make it easier for user to tell if the command succeeds or not. Tested: {jam,koala,ostrich} all passed. {Linew,fred,duck,owl} failed. The failure is the cmake process, not cmakehdf5 itself.
* [svn-r23114] remove "AT-" from buildnameAllen Byrne2012-12-201-2/+2
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* [svn-r23094] cmakehdf5 is a build command script similar to buildhdf5.Albert Cheng2012-12-121-0/+175
| | | | | | | This is an initial implementation and is known to work in Jam only. More porting is in progress. Tested: Jam
* [svn-r22984] Removed references to windows files for legacy builds with ↵Larry Knox2012-10-281-8/+0
| | | | | | Visual Studio that were removed. Tested on jam.
* [svn-r22807] Description:Quincey Koziol2012-09-251-0/+1
| | | | | | | | | | | | | | | | | | | | | Add encode/decode API routines for property lists: H5Pencode/H5Pdecode. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN, in production mode Mac OS X/32 10.7.3 (amazon) in debug mode Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
* [svn-r22735] Purpose:Jonathan Kim2012-09-041-0/+1
| | | | | | | | | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Added H5Pget_mpio_no_collective_cause() function that retrive reasons why the collective I/O was broken during Read/Write IO access. Reasons to break collective I/O: - SET_INDEPENDENT - DATATYPE_CONVERSION - DATA_TRANSFORMS - MPIPOSIX - NOT_SIMPLE_OR_SCALAR_DATASPACES (NULL Space) - POINT_SELECTIONS - NOT_CONTIGUOUS_OR_CHUNKED_DATASET (Compact or External-Storage) - FILTERS Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r22722] Update all references from configure.in to configure.acAllen Byrne2012-08-283-22/+22
| | | | Tested: h5committest
* [svn-r22709] HDFFV-8129: reconfigured on jam, Remove overloading of ↵Allen Byrne2012-08-231-4/+12
| | | | | | autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files. Tested: h5committest
* [svn-r22706] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, ↵Larry Knox2012-08-223-50/+69
| | | | | | libtool 2.4.2 Tested THG machines.
* [svn-r22229] Description:Quincey Koziol2012-04-011-0/+1
| | | | | | | | | | | | | Add 'H5O_mcdt_search_cb_t' to bin/trace script and re-run the bin/reconfigure script. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode
* [svn-r22219] Description:Quincey Koziol2012-03-311-0/+1
| | | | | | | | Merge "file image" changes from feature branch back to trunk. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest upcoming)
* [svn-r21529] Description:Quincey Koziol2011-10-121-0/+2
| | | | | | | | Update tracing information with new types introduced in "actual I/O mode" query routines. Tested on: bin/reconfigure on jam
* [svn-r21302] Fixed the bin/trace Perl script so that it ignores a final ... ↵Dana Robinson2011-08-231-0/+3
| | | | parameter, which it can't process. This allows the correct H5TRACE8 trace function to be added to H5Epush2. Tested on jam (simple change).
* [svn-r21063] Description:Quincey Koziol2011-07-011-23/+57
| | | | | | | | | | | | | | | Tweak make_vers script so that it indents preprocessor commands inside #ifdefs, is more forgiving and informative about the input file's prefix, and is better parameterized with the global variables at the beginning of the script. When major versions are branched from the trunk, the $max_idx value should be the only value that needs to be changed in the version of the script on the trunk. Changes to H5version.h file are just indention. Tested on: Mac OS X/32 10.6.8 (amazon) (too minor to require h5committest)
* [svn-r20986] Changed the release date format to yyyy-mm-dd from the previous ↵Albert Cheng2011-06-151-1/+2
| | | | | | `date` form. Tested: Jam by running bin/release and eyeballed the new date format.
* [svn-r20771] Problem:Albert Cheng2011-05-071-0/+101
| | | | | | | | | | | | | | | | | | | | | | | | | | Test scripts sometimes need to filter some system-specific messages from the actual output so that it can match the correct expected output. These filtering functions, ususally called "STDOUT_FILTER()" and "STDERR_FILTER()" were being repeated in individual test scripts. This becomes a maintenance problem and is error prone. Solution: Extract the two filter functions code to bin/output_filter.sh and then each test script sources it in. This allows reuse of coding and is much easier to maintain and to add new filtering. Tested: LLNL Zeus (linux64 cluster) and Dawndev (Blue-Gene cluster), both for serial mode only. --This line, and those below, will be ignored-- M tools/misc/testh5mkgrp.sh M tools/h5dump/testh5dump.sh.in M tools/h5diff/testh5diff.sh M tools/h5copy/testh5copy.sh M tools/h5ls/testh5ls.sh.in M MANIFEST A bin/output_filter.sh
* [svn-r20652] Description:Quincey Koziol2011-04-261-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | Teach the tracing script & routines about the 'unsigned long' and 'unsigned long long' types, so that the H5Pset_fapl_log() API routine gets tracing information correct. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.6 (amazon) in debug mode Mac OS X/32 10.6.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.6 (amazon) w/parallel, in debug mode
* [svn-r20124] Bug fix (ID: 519)Albert Cheng2011-02-181-103/+0
| | | | | | | | The content of bin/config_para_ibm_sp.sh has been added to release_docs/INSTALL_parallel long ago. Just got around to remove it. Tested: no need since nothing refer to config_para_ibm_sp.sh except MANIFEST. Ran bin/chkmanifest.
* [svn-r19938] Update config.sub to the latest available version ↵Larry Knox2011-01-111-32/+91
| | | | | | (timestamp='2008-01-16', Rev. 1.361) from http://cvs.savannah.gnu.org/viewvc/config/config/. Tested with h5committest on amani, heiwa, and jam and on linew.
* [svn-r19839] Updated to libtool v 2.4, autoconf 2.68 and m4-1.4.15.Larry Knox2010-11-233-738/+1629
| | | | Tested with h5committest on amani, heiwa, and jam.
* [svn-r19470] Bug fix: 1961-- AIX 6.1 --enable-share did not work.Albert Cheng2010-09-221-19/+74
| | | | | | | | | | | | | | | | | | Description: In an AIX 6.1 system, configure --enable-shared could not build a shared HDF5 library. The problem was because the version of config.guess was too old to recongnize AIX 6.X and also configure.in had a local fix which did not recognize AIX 6.X. Solution: 1. Mike McGreevy updated bin/config.guess to handle AIX 6.X. 2 Albert fixed configure.in to recognize AIX 6.X. Note that though HDF5 can build shared lib for AIX 6.X systems but it still could not install the proper library as in AIX 5.X systems. Also, bin/config.sub should be updated too. Tested: BP which is the AIX 6.1 system that exposed this problem.
* [svn-r19439] Description:Mike McGreevy2010-09-201-3/+3
| | | | | | | Update bin/chkconfigure to reflect version 2.67 of Autoconf Tested: ran bin/chkconfigure on jam
* [svn-r19366] Updated autoconf to version 2.6.7, libtool to version 2.2.10, ↵Larry Knox2010-09-102-711/+1050
| | | | | | and m4 to version 1.4.14. Also added m4 directory for m4 macros according to autoconf suggestion. Tested with h5committest on amani, jam, and heiwa, and on linew.
* [svn-r19019] Enhancements:Albert Cheng2010-06-181-12/+9
| | | | | | | | | | | | | | | | | Cleaned up the code a bit by: 1. It used to that -xxx options must be at the beginning such that "buildhdf5 --disable-shared -config" was an error. Now -xxx options can appear anywhere in the command options. 2. Eliminate the need of variables $CONFIG_CXX, $CONFIG_FORTRAN, $CONFIG_PARALLEL by appending their values to $CONFIG_OP directly. 3. Also append $WITH_SZLIB to $CONFIG_OP when it is defined, not later. 4. Call CONFIG directly instead of setting up $CONFIGURE. 5. Removed the last TIMESTAMP since "trap 0" will call QUIT which calls TIMESTAMP already. This eliminated the extra timestamp when it finishes normal. tested: Tested by hand since h5committest does not really test this command.
* [svn-r18647] I updated the default version of autoconf to 2.65 as this is ↵Raymond Lu2010-04-271-1/+1
| | | | | | the default on jam. Tested on jam.
* [svn-r18579] Purpose:Mike McGreevy2010-04-152-19/+19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Autotool Upgrade / Libtool Bug Fix Description: Updated autotools referenced in bin/reconfigure as follows: Autoconf 2.64 --> Autoconf 2.65 Automake 1.11 --> Automake 1.11.1 Libtool 2.2.6a --> Libtool 2.2.6b-mcg The referenced libtool version is a custom version of 2.2.6b. It has been tweaked to fix a bug in libtool that occurs when using PGI 10.0 compilers. A check incorrectly categorizes the C++ compiler as version 1.0 instead of 10.0, and the link line is subsequently set up incorrectly and fails to compile. A patch has been made available and will be included in the next release of libtool, but in the meantime I've applied the patch to a custom installation as indicated above. This bin/reconfigure now references the custom installation, and the resulting configure script will correctly categorize the PGI 10.0 C++ compiler. Ran bin/reconfigure to regenerate configure and makefiles. Tested: jam and amani with PGI 10.0 compilers. h5committest
* [svn-r18410] Fixed a typo in a message.Albert Cheng2010-03-171-1/+1
| | | | No test needed since it is in a message string.
* [svn-r18365] Edit README file to test svk sync.Larry Knox2010-03-031-0/+1
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* [svn-r18364] Edit README file to test svk sync.Larry Knox2010-03-031-1/+1
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