| Commit message (Collapse) | Author | Age | Files | Lines |
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More changes to move metadata journaling code closer to trunk:
- Retire old (H5AC1) cache code & tests
- Remove 'clear_dirty_bits' callback from client class struct
- Eliminate 'addr' & 'len' parameters from 'free_icr' client callbacks
Tested on:
Mac OS X/32 10.6.3 (amazon) debug & production
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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Rename "old" cache code and routines from H5AC to H5AC1.
Tested on:
Mac OS X/32 10.6.2 (amazon) w/debug, prod & parallel
(h5committest not required on this branch)
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Minor brush-clearing changes to converge metadata_journaling branch and
trunk.
Tested on:
Mac OS X/32 10.6.2 (amazon) debug & prod
(h5committest not required on this branch)
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1) In H5F.c, modified several metadata cache related routines to
talk to the new cache, not the pre-journaling cache.
2) Enabled the API smoke check in cache2_journal.
3) Wrote a example of use of the journaling API and included
it as a test in cache2_journal.c. Some re-factoring of the
cache2 test code to move supporting macros and functions
out of cache2_api.c and into cache2_common.c & .h.
4) Modified tools/h5recover/trecover to include a new verify
option, which is intended to verify that a file has been
correctly recovered via h5recover.
The basic idea of this feature is to look at the data sets
in the architype and recovered files, and verify that the metadata
in the versions in the recovered file (if they appear at all), agree
with the architype versions where it must, and contain plausible
values where it is possible that changes were lost.
The test also looks at the raw data, and dumps the architype and
recovered versions to stdout if anything looks "odd".
At present, my addition only works with the integer chunked
data set -- not with the other data set types that can be
created by trecover.
The code for the verify function is in the new file
trecover_verifier.c. Updated Makefile.am and the manifest
accordingly.
5) Modified the synchronous crash test in tools/h5recover to
to function when return codes are not passed back to the
calling script, and to use the above modifications to trecover
to examine the recovered file, instead of comparing the output
of dumps of the architype and recovered files.
6) Commented out the asynchronous crash test in tools/h5recover,
as the functionality of that test is now handled in the
"walking crash" test.
7) Modified the "walking crash" test to use the trecover modifications
to verify each recovery.
8) Modified the journaling file marking tests to function when the
the return code is not passed back to the calling script.
9) Commented out the "tgroup-1.ls 1 -w80 -r -g tgroup.h5" in
tools/h5ls. I am given to understand that this test was
failing on redstorm due to yod's failure to pass back return
codes. I have not investigated this personally.
10) Updated bin/reconfigure to deal with recent changes in the file
system structure on jam.
Testing:
Tested (serial) on Phoenix, Linew, and RSQ -- all pass. Note that
on the "walking crash" test in tools/h5recover, I was unable to
set the asynchronous crash delay small enough to get the crash to
occur before trecover completed (I got down to 1 usec). This
was not a problem on on redstorm the last time we tried testing
there, so I'm not too worried about it.
I also did a parallel test on jam -- this test failed with an assertion
failure in dtypes -- output follows:
============================
dtypes Test Log
============================
Testing non-aligned conversions (ALIGNMENT=1)....
Testing H5Tget_class() PASSED
Testing H5Tcopy() PASSED
Testing H5Tdetect_class() PASSED
Testing compound datatypes PASSED
Testing query functions of compound and enumeration types PASSED
Testing transient datatypes PASSED
Testing named datatypes PASSED
Testing functions of encoding and decoding datatypes PASSED
Testing encoding datatypes with the 'use the latest format' flag PASSED
Testing exceptions for int <-> float conversions PASSED
Testing deprected API routines for datatypes PASSED
Testing string conversions PASSED
Testing random string conversion speed PASSED
Testing some type functions for string PASSED
Testing compound element reordering PASSED
Testing compound subset conversions PASSED
Testing compound element shrinking & reordering PASSED
Testing optimized struct converter PASSED
Testing compound element growing PASSED
Testing compound element insertion PASSED
Testing packing compound datatypes PASSED
Testing compound datatype with VL string dtypes: H5FD.c:2150: H5FD_write: Assertion `1==H5P_isa_class(dxpl_id,(H5P_CLS_DATASET_XFER_g))' failed.
Command terminated by signal 6
0.20user 0.10system 0:00.39elapsed 75%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (4major+10263minor)pagefaults 0swaps
I'm checking in anyway, as this looks unrelated to any of my recent
changes. Quincey and I should get together about this one.
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Bring revisions 15289:15457 from trunk into metadata journaling
branch.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.5.2 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
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Merge revisions 14900:15037 from trunk into metadata journaling branch
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.5.2 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
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Bring back revisions 14700:14800 from the trunk
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.5.2 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
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Bring changes from trunk from the time the branch was created (r14280)
up to the 1.8.0 release (r14525) back into the metadata journaling branch.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
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which has a lot
of nice new features.
(ported revisions through r14312 from trunk)
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Remove --enable-hdfv1_6 configure flag, now that all dependencies on it
have been removed and new --with-default-api-version=[v16|v18] and
--disable-deprecated-symbols flags have taken its place.
Update types in bin/trace so that bin/reconfigure runs cleanly.
Run bin/reconfigure to regenerate configure script, along with
other associated files, etc.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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Make certain to define the API function and typedef version macros
in all situations.
Tested on:
FreeBSD/32 6.2 (duty)
Mac OS X/32 10.4.10 (amazon)
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Make version macro for typedefs closer to version macro for API
functions.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
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Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate
them, leaving only a few tame specimens in text files and comments. ;-)
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
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First real use of API versioning code, H5E routines switched to use
new API versioning scheme.
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
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Remove stray reference to "group revision" configure flag
Remove Windows-specific EOL characters from src/H5FDwindows.c
Add some missing types to bin/trace
Re-run bin/reconfigure script to regenerate information after changes above.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (linux)
Solaris/32 2.10 (linew)
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Add --enable-deprecated-symbols configure option, to allow users to
remove deprecated public API symbols at configure time.
Add bin/make_vers script to bin/reconfigure actions.
Run bin/reconfigure to regenerate autotool components.
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
Linux/32 2.6 (kagiso)
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Initial checkin of API version macro generation script (bin/make_vers),
along with configuration file (src/H5vers.txt) and generated header
(src/H5version.h). Right now, no version macros are defined, since the main
source code and tests need to be adjusted to pay attention to the macros
defined.
Also, fixed makefile for generating error header files when used with
GNU make.
Tested on:
Mac OS X/32 10.4.10 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Simple code improvement to have more unified code.
Tested:
in kagiso only since it is a simple script change.
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Tested Platform:
Kagiso.
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used by DailyHDF5Test
script.
Tested:
Tested the new format works in all NCSA machines.
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Added a clarification the environment variables dumping is BEFORE command option
parsing. Also added a dumping AFTER the option parsing.
Tested:
Just eyeballed since it is trival. Let daily tests runs to test it.
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Bug fix (851)
Description:
h5vers calls bin/reconfigure which may fail but h5vers does not
check its return value. This will result in discrepency between
files such as configure and configure.in.
Solution:
Fixed it by checking exit code of bin/reconfigure and return error if
it fails.
Tested:
osage and kagiso.
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most recent versions of the autotools.
Updated autotool versions are: autoconf 2.61, automake 1.10.0, and libtool 1.5.22.
Tested on kagiso.
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Bug fix.
Description:
When it reads the allhostfile, it does eliminate comments or blank lines
completely, thus it continues to use ssh/rsh even when only the local
host is tested.
Solution:
Changed the sed scripts to eliminate comments and blank lines.
Tested:
Cobalt by running bin/runtest. Since this is not really library source,
the three platforms test does not apply.
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Show disk usage at different stage of the snapshot processes
so that we know how much disk are needed in different stage.
(This still does not know how big disk usage during make check
process since many temporary files are deleted right after the tests
finish.)
Tested platform:
Kagiso.
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Description:
Fixed some mistakes introduced yesterday due to a misunderstanding of what sort of datatypes the trace scripts prints out. This commit mostly reverts those changes, adds some new datatypes, and fixes some errors with regards to how the trace script handles pointer datatypes. Since the trace script scans the argument list for the "*" character and handles it appropriately, one should never need to explicitly specify a pointer type in the TypeString hash.
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Description:
Fix up the bin/trace script. The script has been updated to include all of the new datatypes that have been added to the library. It's output has also been made a bit clearer with regards to the NO TRACE comment scattered throughout the code which prevents tracing information from being added.
The script cannot handle functions that take a variable number of arguments nor can it deal with functions whose prototype differs based on certain preprocessor directives. However, there are only 3 instances of this in the library. All other warnings that the script used to generated have been fixed.
The script has not actually been run on the source files yet.
Tested:
smirom
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bin/makehelp (formatting
the output in the makefile was pretty hard).
Tested that make still works on kagiso; no code changes at all.
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Tweak e-mail address inserted into files from "hdfhelp@ncsa.uiuc.edu"
to "help@hdfgroup.org"
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Tested in kagiso.
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Tested: kagiso.
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Test:
Just visual inspection as these are all comments changes.
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No need to test as it is trival comment.
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Separated the file type guessing from UNKNOWN_TYPE into a function itself
to be used by other routines later. Added debug printing feature.
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Add mention of the h5copy & h5mkgrp tools to the release notes.
Update documentation for the "--private" flag in release script
Tested on:
None - just text/comment changes
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Tested: kagiso.
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Tested: in kagiso via bin/reconfigure and then svn diff to see
the effect.
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copyright notice.
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Tested: visual inspection as they are all just comments.
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files.
Tested in kagiso.
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Tested: kagiso.
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copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
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Changed all copyright notice to the THG version.
Tested in kagiso.
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Improvement.
Description:
Added the forcemode option. (was in hdf4 for months.)
auto-configure have changed the ac_try syntax from 'eval $ac_try' to
'eval "$ac_try"'. Add a new global-substitute to support that too.
Platforms Tested:
Kagiso only since it is just a shell script simple change.
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The execution method changed a little bit. It is not just (eval $ac_try ...)
but as (eval "$ac_try") instead. Changed to use the new pattern.
Platfrom tested:
Red storm.
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Updated the DOC_URL with the new Repository URL.
Fixed a syntax error in the doc release commands.
Tested:
kagiso
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from v1.6.
Did some cosmetic changes of the check-vfd option.
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