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* Updated release preparation branch version number to 1.12.1-5 for rc1.Larry Knox2021-05-181-0/+1520
| | | | | | Set default build mode to production. Set HDF5_GENERATE_HEADERS to OFF. Initial commit for hdf5_1_12_1 branch.
* Hdf5 merge issue #458 to hdf5_1_12 (#463)Larry Knox2021-03-128-58/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Snapshot version 1.12 release 1-3. Update version to 1.12.1-4. * First cut of the H5 public API documentation. (#80) * First cut of the H5 public API documentation. * Added H5Z "bonus track." * Applied Quincey's patch. * Added the missing patches from Quincey's original patch. * H5PL (complete) and basic H5VL API documentation. * Added H5I API docs. * Added H5L API docs. * First installment from Elena's H5T batch. * Second installment of Elena's H5T batch. * Final installment of Elena's H5T batch. * Full set of current H5F documentation. (#105) * First cut of the H5 public API documentation. * Added H5Z "bonus track." * Applied Quincey's patch. * Added the missing patches from Quincey's original patch. * H5PL (complete) and basic H5VL API documentation. * Added H5I API docs. * Added H5L API docs. * First installment from Elena's H5T batch. * Second installment of Elena's H5T batch. * Final installment of Elena's H5T batch. * Migrated documentation for SWMR functions. * Catching up on MDC functions. * Integrated the H5F MDC function documentation. * Added MDC and parallel H5F functions. * Slightly updated main page. * Added doxygen/dox/H5AC_cache_config_t.dox to MANIFEST. * Doxygen - added (mostly) beginner functions (#112) * Doxygen - added (mostly) beginner functions * Removed duplicate H5Pset_szip function * Add src/H5module.h to MANIFEST. * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Avoid aligned access for references by decoding into temporary buffer and then copying the result into the actual buffer. Update test to be more thorough with using compound datatype fields everywhere. (#206) * Modify temporary rpath for testing in java example scripts. (#230) * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Fixes various warnings noticed on Windows (#425) * Fixes various warnings noticed on Windows - Adds a prototype for our implementation of vasprintf - Return type of H5_get_utf16_str() is now non-const - Fixes possible uninitialized return type in Wremove_utf8 - Better isolation of fork() code in accum.c:test_swmr_write_big() - Better isolation of non-zlib code in dsets.c:test_filter_delete() - Removed unused variable in trefer.c:test_reference_cmpnd_obj() * Fixes clang-format issues * Applied clang-tidy readability-non-const-parameter warning fixes auto… (#429) * Automatically applied clang-tidy readability-avoid-const-params-in-decls fixes Removes useless const declarations. * Fixed most readability-non-const-parameter warnings These changes were made automatically by clang-tidy, but I manually reverted the changes related to the H5Z_func_t signature. * Reformat source with clang v10.0.1. Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Added C++11 override keyword where appropriate (#433) Added H5_OVERRIDE macro for compatibility with both C++11 and older. * Various clang tidy warning fixes (#448) * Fixed clang-tidy bugprone-reserved-identifier warnings * Fixed clang-tidy bugprone-assert-side-effect warnings * Fixed clang-tidy bugprone-copy-constructor-init warning * Fixed clang-tidy readability-redundant-preprocessor warning For error_test.c the removed code was already dead, because it was in the else of an `#if H5_USE_16_API` block. Based on H5Location.h, I think p_get_ref_obj_type was meant to be in `#ifndef DOXYGEN_SHOULD_SKIP_THIS` and an `#endif` was missing. Similarly, in the header, getObjTypeByIdx is only in H5_NO_DEPRECATED_SYMBOLS, not DOXYGEN_SHOULD_SKIP_THIS. * Fixed clang-tidy readability-redundant-string-init warnings * Fixed some clang-tidy performance-type-promotion-in-math-fn warnings * Fixed clang-tidy performance-unnecessary-value-param warnings * Reformat source with clang v10.0.1. Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Removed checks/workarounds for pre-C++89 compatibility (#449) After 30+ years, just assume that the following exist: - extension-less includes - namespaces - std:: - static_cast - bool * Fixed all clang-tidy bugprone-suspicious-string-compare warnings (#451) * Fixed all clang-tidy bugprone-suspicious-string-compare warnings This change was generated entirely by clang-tidy itself. * Reformat code with clang v10.0.1. Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Remove 2 functions incorrectly merged from develop in a cherry-pick merge of PR #451. Co-authored-by: Gerd Heber <gheber@hdfgroup.org> Co-authored-by: bljhdf <58825073+bljhdf@users.noreply.github.com> Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Quincey Koziol <quincey@koziol.cc> Co-authored-by: Sean McBride <sean@rogue-research.com> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* Update URL in source file Copyright headers for web copy of COPYINGLarry Knox2021-02-2020-20/+20
| | | | file - files not in src or test.
* Correct TARGET variable and CMake config file locationAllen Byrne2020-11-121-2/+2
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* OESS-98 add CMake option to build plugins project within hdf5Allen Byrne2020-10-161-2/+2
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* Source formattedAllen Byrne2020-10-0116-1071/+1001
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* Add clang-format changes from develop.Allen Byrne2020-09-281-0/+14
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* Sync with developDana Robinson2020-08-011-2/+2
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* Whitespace cleanup compared to developAllen Byrne2020-05-0910-60/+60
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* Merge changes from develop mostly cmake 3.12 minimum versionAllen Byrne2020-02-231-1/+1
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* Improved CMake options for testsAllen Byrne2020-01-191-1/+1
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-191-4/+4
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* Apparently, + has no special meaning, and neither does \+, in so-calledDavid Young2019-12-191-1/+1
| | | | | | | | "obsolete" / POSIX "basic" regular expressions. Also, not every version of `sed` out there supports the `-E` option. So delete the -E flag and use the regex `[^/][^/]*` instead of `[^/]+`. Add config/netbsd to the MANIFEST.
* Make these scripts relocatable again: derive a relative path for theDavid Young2019-12-191-1/+24
| | | | | | | original installation prefix from the examples prefix. Use that relative path to locate the current installation prefix, always. Fall back to an absolute installation prefix if the relative path cannot be derived.
* Let us override the examples directory using --with-examplesdir=DIR.David Young2019-12-192-3/+3
| | | | | | | | | This is handy for NetBSD where HDF5 examples are installed by convention in $prefix/share/examples/hdf5/ rather than in ${prefix}/share/hdf5_examples/, which is the HDF5 default. Place hdf5_examples/ under ${datarootdir} which on most systems will be ${prefix}/share/, anyway.
* Under the examples directories, always find the installed HDF5David Young2019-12-191-1/+1
| | | | | | | | | | executables and scripts using @prefix@ instead of a relative path, because the number of ../ in the relative path will be different on NetBSD than on other systems. Examples on NetBSD are installed at ${prefix}/share/examples/hdf5/ instead of at ${prefix}/share/hdf5_examples/, by convention. It may be the same on other BSDs, I'm not sure.
* Revert "Merge branch 'hdf5_1_12' of ↵Jerome Soumagne2019-12-092-27/+4
| | | | | | | https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_12" This reverts commit 9f9336a5bd541752f472bab4c93da8de89f862cd, reversing changes made to 437a1919e7ba60fe75a33a466d264183a0255319.
* Merged HDFFV-10929_2GB_testing to hdf5_1_12Richard Warren2019-12-062-4/+27
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* Whitespace cleanupAllen Byrne2019-09-1816-1111/+1112
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* HDFFV-10529 Update CMake tests to use test fixturesAllen Byrne2019-07-231-70/+65
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* HDFFV-10845 make flags privateAllen Byrne2019-07-181-0/+10
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* Correct OUTPUT_NAME usageAllen Byrne2019-07-181-0/+1
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* HDFFV-10845 use of TARGETFILE disables auto emulatorAllen Byrne2019-07-171-2/+4
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* HDFFV-10805 Add option to only build shared targetsAllen Byrne2019-06-181-6/+16
| | | | | HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static HDFFV-10803 Update FindSZIP.cmake find module Remove unneeded modules and update java modules
* HDFFV-10703 Update CMake commands to latest standardAllen Byrne2019-02-151-4/+4
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* Change prefix in example scripts to relative path to bin. This was doneLarry Knox2018-08-231-1/+1
| | | | | for 1.8, and works wherever installed without the need to replace the original prefix.
* Fixed HDFFV-10404Binh-Minh Ribler2018-07-131-1/+1
| | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* Fix MPI on Windows by adding MPI include folderAllen Byrne2018-05-091-2/+2
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* TRILABS-19 remove add_defintions and use generator expressionsAllen Byrne2018-04-261-6/+6
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* TRILABS-20 set a compiler name on all project commandsAllen Byrne2018-04-201-1/+1
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* TRILABS-19 Initial conversion of include_directories to targetsAllen Byrne2018-04-171-0/+2
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* Change CMake min to 3.10Allen Byrne2018-03-091-1/+1
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* Inc CMake min, Add new tests, rework test CMake filesAllen Byrne2018-02-272-3/+3
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* HDFFV-10385 rework java namesAllen Byrne2018-01-171-2/+0
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* Fixed incorrect callsBinh-Minh Ribler2017-09-1416-52/+52
| | | | | | | | Description: Replaced the calls to the deprecated function printError with printErrorStack in examples. Platforms tested: Linux/32 2.6 (jam)
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-2520-114/+87
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* HDFFV-10094: upgrade cmake command conventionsAllen Byrne2017-01-111-2/+28
| | | Also converted tests to use macros
* Update cmake min version and cmake command conventionAllen Byrne2017-01-102-16/+15
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* Description:Binh-Minh Ribler2016-11-1416-144/+53
| | | | | | | | Removed H5_NO_NAMESPACE from the examples. They were missed from the previous cleanup. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus)
* [svn-r27507] Merge of r27237-27500 from the trunk.Dana Robinson2015-08-141-4/+4
|\ | | | | | | | | | | | | | | Tested w/ h5committest NOTES: - The manifest may still be messed up. - Cmake fails since the dual binary work needs to be merged with this repo's CMake externals.
| * [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk.Scot Breitenfeld2015-08-111-4/+23
| | | | | | | | Tested: h5committest --PASSED--
| * [svn-r27489] reverted merge of branchScot Breitenfeld2015-08-111-23/+4
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| * [svn-r27470] svn merge -r27425:27460 https://svn.hdfgroup.uiuc.edu/hdf5/trunkScot Breitenfeld2015-08-051-4/+1
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| * | [svn-r27469] Merge from trunk with dual-binary CMake code.Allen Byrne2015-08-052-5/+8
| | | | | | | | | | | | Tested: local linux with CMake
| * | [svn-r27221] Reworked Fortran autools REAL KIND detection.Scot Breitenfeld2015-06-161-0/+5
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| * | [svn-r27186] added fix for jam with promoted reals and integersScot Breitenfeld2015-06-101-0/+1
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| * | [svn-r27167] more DT fixesScot Breitenfeld2015-06-091-0/+1
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| * | [svn-r27164] various bug fixes for DTScot Breitenfeld2015-06-081-0/+1
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| * | [svn-r27154] fixed issue with mis-matching long double between Fortran and CScot Breitenfeld2015-06-051-0/+1
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| * | [svn-r27151] fixed __float128 errorsScot Breitenfeld2015-06-041-0/+1
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