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* [svn-r18198] Description:Quincey Koziol2010-01-301-7/+7
| | | | | | | | | Trim trailing whitespace from source code files, with following command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r17239] Purpose: Fix bug and improve readabilityBinh-Minh Ribler2009-07-271-16/+187
| | | | | | | | | | | | | | | Description: - Revised DataSet::write to pass in correct string buffer - Added member function DataSet::getInMemDataSize() to simplify getting the dataset's data size in memory. - Added private functions for reading fixed- and variable-len string data: p_read_fixed_len and p_read_variable_len. - Added tests to write/read array of strings to datasets. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r15998] Description:Binh-Minh Ribler2008-10-301-12/+12
| | | | | | | Fixed various comments/headers to update the C++ reference manual. Platforms tested: Linux 2.6 (kagiso) - to make certain no typo introduced
* [svn-r15960] Description:Binh-Minh Ribler2008-10-271-9/+61
| | | | | | | Oops, I accidentally only did "svn commit" instead of "svn commit -m" as instructed. "ported revisions 15958 to 15959 (Added missing wrappers for H5Rdereference) from trunk."
* [svn-r15629] Description:Quincey Koziol2008-09-161-1/+1
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15401] Purpose: Fix bugBinh-Minh Ribler2008-07-241-3/+3
| | | | | | | | | | | | | | | | | | | | Description: Changed all subclasses' setId to p_setId and put back setId in IdComponent. p_setId is used in the library where the id provided by a C API passed on to user's application in the form of a C++ API object, which will be destroyed properly, and so p_setId does not call incRefCount. On the other hand, the public version setId is used by other applications, in which the id passed to setId needs to be closed properly by the application, so setId must call incRefCount for the new object to prevent prematurely closing of the id. Platforms tested: Linux 2.6 (kagiso) Still on going with these two platforms, but needed to check in before daily tests start. SunOS 5.10 (linew) FreeBSD (duty)
* [svn-r15386] Purpose: Fix bugBinh-Minh Ribler2008-07-181-5/+6
| | | | | | | | | | | | | | Description: A bug in reference counter was exposed when Ray fixed H5Awrite in the main library. ::setId() called incRefCount when it shouldn't. Made sure that id's reference counter is manually incremented properly in copy constructor and operator= only. The main library handles the rest. Platforms tested: SunOS 5.10 (linew) Linux 2.6 (kagiso) FreeBSD (duty)
* [svn-r15046] Purpose: Fixed bugsBinh-Minh Ribler2008-05-201-51/+64
| | | | | | | | | | | | | | | | | | | Description: The class hierarchy was revised to address the problem reported in bugzilla #1068. Classes AbstractDS and Attribute are moved out of H5Object. Class Attribute now multiply inherits from IdComponent and AbstractDs and class DataSet from H5Object and AbstractDs. In addition, data member IdComponent::id was moved into subclasses: Attribute, DataSet, DataSpace, DataType, H5File, Group, and PropList. Also fixed bugzilla 1045: revised Attribute::write and Attribute::read wrappers to handle memory allocation/deallocation properly. (bugzilla 1045) Platforms tested: SunOS 5.10 (linew) Linux 2.6 (kagiso) FreeBSD (duty)
* [svn-r14192] Description:Quincey Koziol2007-10-081-5/+3
| | | | | | | | | | | | | | | | | | Deprecate H5Dextend in favor of H5Dset_extent (without using API versioning, due to changed behavior) and switch internal usage to H5Dset_extent Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14148] Description:Quincey Koziol2007-09-141-0/+2
| | | | | | | | | | | | | | | | Add H5Rget_obj_type() to the API versioning and switch internal routines to use H5Rget_obj_type2() Misc. other code cleanups, etc. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 2.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13092] Purpose: MaintenanceBinh-Minh Ribler2007-01-021-1/+29
| | | | | | | | | | | Description: Added overloaded method DataSet::vlenReclaim, that has better prototype. Fixed some typos. Platforms tested AIX 5.1 (copper) SunOS 5.8 64-bit (sol) Linux 2.6 (kagiso)
* [svn-r12795] Purpose: Fixing bugBinh-Minh Ribler2006-10-221-26/+34
| | | | | | | | | | | | | | | | | | | | | | | | | Description: Wrappers of H5Rcreate had incorrect prototypes. Solution: Added these overloaded functions for H5Rcreate wrapper to IdComponent: void reference(void* ref, const char* name, DataSpace& dataspace, H5R_type_t ref_type = H5R_DATASET_REGION) const; void reference(void* ref, const char* name) const; void reference(void* ref, const H5std_string& name) const; Added these overloaded functions for H5Rdereference: void dereference(IdComponent& obj, void* ref); DataSet(IdComponent& obj, void* ref); Group(IdComponent& obj, void* ref); DataType(IdComponent& obj, void* ref); The incorrect wrappers will be removed after announcing. Platform tested: Linux 2.4 (heping) AIX 5.1 (copper) SunOS 5.8 64-bit (sol)
* [svn-r12404] Purpose: Fix typos/formatsBinh-Minh Ribler2006-06-051-9/+11
| | | | | | | | | | Description: Fixed typos and re-arranged some functions to be in sync with 1.6. Platforms tested: Linux 2.4 (heping) SunOS 5.9 (shanti) AIX 5.1 (copper)
* [svn-r12368] Purpose: Fixed bugBinh-Minh Ribler2006-05-231-11/+13
| | | | | | | | | | | | | | | | | Description: Shanti compiler destroy unnamed objects later than others, which caused some reference counting test fail. Revised the test so that destructors are called at the same time, regardless the differences of compiler implementation. Revised some constructors, close, operator=, and destructors to make sure that all the object ids are handled properly. Platforms tested: Linux 2.4 (heping) SunOS 5.9 (shanti) HPUX 11.00 (kelgia) AIX 5.1 (copper)
* [svn-r12200] Purpose: MaintenanceBinh-Minh Ribler2006-04-051-3/+3
| | | | | | | | | | | | Description: Changed to alias string instead of std, i.e. H5std_string instead of H5std, because the old way wasn't working when std didn't exist. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) HPUX 11.00 (kelgia) - this was the problematic platform but I wasn't able to test before.
* [svn-r12185] Purpose: Code cleanupBinh-Minh Ribler2006-03-311-3/+0
| | | | | | | | Description: Removed an empty #ifdef block that was left by mistake. Platforms tested: Linux 2.4 (heping) - very minor
* [svn-r12180] Purpose: MaintenanceBinh-Minh Ribler2006-03-301-6/+3
| | | | | | | | | | | Description: Added alias H5_std so either the global or std namespace can be used, depending on H5_NO_STD. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) AIX 5.1 (copper)
* [svn-r11755] Purpose: Code improvementBinh-Minh Ribler2005-12-031-2/+9
| | | | | | | | | | | | | | | | | Description: There was a workaround for predefined types, in the C++ library, implemented when the C++ library was handling the reference counting of the object ids on its own. Currently, the C++ library is using the available APIs from the C library for that purpose, and there were bugs reported involving that part of the C++ library. So, I decided to remove the workaround completely. Also, improved the use of std members. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) Linux 2.4 w/PGI (colonelk)
* [svn-r11487] Purpose:Quincey Koziol2005-10-011-12/+12
| | | | | | | | | | | Code cleanup Description: Tweak copyright on C++ source files to reduce whining by copyright checking script. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++
* [svn-r11264] Purpose: Additional code improvementBinh-Minh Ribler2005-08-181-0/+3
| | | | | | | | | | Description: Used "using" declaration and directive better to reduce namespace pollution. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol)
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-22/+22
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11206] Purpose: Additional wrapper/Code improvementBinh-Minh Ribler2005-08-081-12/+46
| | | | | | | | | | | | | | | | Description: Added wrapper for H5Iget_type. Added try/catch to many APIs that call private functions so that more specific information can be provided at failure. Added IdComponent::inMemFunc to help providing specific info. Added const to parameters of several functions that missed that. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) AIX 5.1 (copper) IRIX64 with -n32 (modi4) HPUX 11.00 (kelgia)
* [svn-r11151] Purpose: Fix bugzilla #407 and #408Binh-Minh Ribler2005-07-251-2/+2
| | | | | | | | | | | | | | | | | | | | Description: PropList::copyProp has incorrect prototype; although it works, it does cause users inconvenience. Solution: Added another overloaded function with correct prototype. The old version will be removed in a future release. In the meantime, "Obsolete" will be displayed in its RM page. Also, changed several checks on the returned value of a C API from non-positive to negative because id = 0 is no longer significant, now that the C++ reference counting had been removed. Platforms tested: Linux 2.4 (heping) IRIX64 with -n32 (modi4) Linux 2.4 w/PGI (colonelk)
* [svn-r11060] Purpose: Fix bug (reported by user)Binh-Minh Ribler2005-07-101-9/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: The use of FileCreatPropList::DEFAULT sometimes caused failure in the reference counting area. This occurs to all the default property lists, which also include FileAccPropList::DEFAULT, DSetCreatPropList::DEFAULT, and DSetMemXferPropList::DEFAULT. H5P_DEFAULT was used to create these default prop lists and because its value is 0, the id of these prop lists are 0, which is rejected by the H5I functions during the reference counting. Solution: The main action to fix the above problem was to use H5P_FILE_CREATE H5P_FILE_ACCESS H5P_DATASET_CREATE H5P_DATASET_XFER to define the default property lists accordingly. Yet, when this fix was applied, some bug in reference counting was revealed. It appeared that some ids were not incremented but were passed in for decrementing. The following actions were then taken to fix and improve the current use of reference counting H5I functions. * added private func IdComponent::p_valid_id to verify that the id is a valid id and can be passed into an H5I function * used p_valid_id to validate an id before calling an H5I functions in the reference-counting member functions incRefCount, decRefCount, and getCounter * changed to use member function incRefCount, decRefCount, and getCounter instead of the C APIs H5Iinc_ref, H5Idec_ref, and H5Iget_ref throughout IdComponent. In addition, overloadings were added for incRefCount, decRefCount, and getCounter to take an id different than the id of the current instance; they can be convenient during debugging. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) AIX 5.1 (copper)
* [svn-r10825] Purpose: Fix RM bugBinh-Minh Ribler2005-05-291-0/+1
| | | | | | | | | | | | | | Description: Doxygen 1.4.2 has a bug that when an \exception immediately follows a \brief, the exception will be displayed prominently in the brief section. Solution: Temporarily added /// to after \brief to work around this problem and notified the Doxygen's author. Platforms tested: Linux 2.4 (heping) - only in documentation sections
* [svn-r10816] Purpose: Fix bug (reported by user, not filed)Binh-Minh Ribler2005-05-281-1/+1
| | | | | | | | Description: Passing 0 where it should be "". Fixed! Platforms tested: Linux 2.4 (heping) - very minor, and has been in 1.6 for a while
* [svn-r10212] Purpose: Added more wrappersBinh-Minh Ribler2005-03-141-12/+25
| | | | | | | | | | | | | | | Description: Added the following to the C++ library + overloaded functions: string CommonFG::getObjnameByIdx(hsize_t idx) H5T_order_t AtomType::getOrder() + wrappers for H5*close + wrappers for H5Arename, H5Aget_storage_size, and H5Dget_storage_size Platforms tested: Linux 2.4 (heping) AIX 5.1 (copper) SunOS 5.8 64-bit (sol)
* [svn-r10050] Purpose: Fix bugzilla #241Binh-Minh Ribler2005-02-201-0/+3
| | | | | | | | | | | Description: Checked return value from C API for failure condition. Added/Modified some comments appropriately. Platforms tested: Linux 2.4 (heping) AIX 5.1 (copper) - tests passed but there were some old warnings about duplicate symbols on std::string; I'll check on that.
* [svn-r9129] Purpose: Updating documentationBinh-Minh Ribler2004-08-201-2/+3
| | | | | | | | | | Description: Updated various function headers for the RM as reviewing progresses. Rearranged functions in header files for more sensible look of the RM. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene)
* [svn-r9049] Purpose: Clean up codeBinh-Minh Ribler2004-08-071-18/+0
| | | | | | | | | | | | | Description: Removed private functions p_close, that were left over from the removal of the reference counting mechanism. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene) Misc. update: release_docs/RELEASE will be updated soon.
* [svn-r9046] Purpose:Binh-Minh Ribler2004-08-071-2/+2
| | | | | | | | | | | | | | | | | | | Code cleanup Description: DataType::commit had incorrect parameter, H5Object. Changed it to CommonFG, for H5File and Group. The change caused additional header files needed for several other cpp files. Moved some functions from Group into the base class CommonFG for H5File too. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene) Misc. update:
* [svn-r8602] Purpose:Quincey Koziol2004-06-011-4/+3
| | | | | | | | | | | Code update Description: Update C++ wrappers to use new ID reference counting mechanisms. Platforms tested: FreeBSD 4.9 (sleipnir) w/C++ Too focused to require h5committest
* [svn-r8595] Purpose:Binh-Minh Ribler2004-05-281-2/+2
| | | | | | | | | | | | | | Add/Improve documentation Description Added doxygen documentation to H5PredType.cpp and made minor changes to the others for either correction or clarification. Platforms: SunOS 5.7 (arabica) Linux 2.4 (eirene) Misc. update:
* [svn-r8593] Purpose:Binh-Minh Ribler2004-05-271-2/+3
| | | | | | | | | | | | | | | | | | Add more C++ wrapper and documentation - incrementally check-in Description Added another overloaded constructor to StrType. Added doxygen documentation to H5IdComponent.cpp. Corrected some comments. This is an incremental check-in to preserve the code, corresponding tests will follow in a few weeks. Platforms: SunOS 5.7 (arabica) Linux 2.4 (eirene) Misc. update:
* [svn-r8588] Purpose:Binh-Minh Ribler2004-05-271-0/+68
| | | | | | | | | | | | | | | | | | | Add C++ wrappers - incrementally check-in Description Added wrapper for these C APIs: H5Rcreate H5Rget_obj_type H5Rget_region This is an incremental check-in to preserve the code, corresponding tests will follow in a few weeks. Platforms: Linux 2.4 (eirene) I'm checking the code out and test on arabica too. Misc. update:
* [svn-r8587] Purpose:Binh-Minh Ribler2004-05-261-0/+35
| | | | | | | | | | | | | | | Add C++ wrappers - incrementally check-in Description Added wrapper for these C APIs: H5Dget_offset H5Dget_space_status Platforms: SunOS 5.7 (arabica) Linux 2.4 (eirene) Misc. update:
* [svn-r8576] Purpose:Binh-Minh Ribler2004-05-261-56/+174
| | | | | | | | | | | | | | | | | | | | | | | Add more C++ wrapper and documentation - incrementally check-in Description: Added doxygen documentation to: H5DataSet.cpp H5DataSpace.cpp H5CommonFG.cpp and a wrapper for H5Rcreate to H5Object.* with tests will be added later. There are more documentation need to be added to these files but to preserve the changes, I check them in now. Platforms: SunOS 5.7 (arabica) Linux 2.4 (eirene) Misc. update:
* [svn-r6990] Purpose:Binh-Minh Ribler2003-06-071-1/+25
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix and minor code enhancement Description: Missing methods to read/write C++ String for an attribute and a dataset. Solution: Added overloaded functions read and write to H5::Attribute and H5::DataSet. Also, added another constructor StrType so the need to separately set the length of the string type can be eliminated. It's minor but convenient. Made some minor changes to make error messages more readable. Platforms: SunOS 5.7 (arabica) Linux 2.4 (eirene) IRIX 6.5.11 (modi4) HPUX 11.00 (kelgia)
* [svn-r6509] Purpose:Binh-Minh Ribler2003-03-201-1/+6
| | | | | | | | | | | | | | | | | | | | | Adding new platform support Description: Added support for the C++ API on hpux11.00 with the compiler aCC. Because aCC doesn't use "std," a new macro H5_NO_STD is provided and used where "std" is presented in the library. In addition, changed several cout's when reporting errors to cerr's. Platforms tested: HPUX 11.00 (kelgia) Linux 2.2x (eirene) IRIX 6.5.11 (modi4) SunOS 5.7 (arabica) - by Elena Misc. update:
* [svn-r6236] Purpose: CopyrightBinh-Minh Ribler2003-01-071-0/+14
| | | | | | | | | Description: Added copyright notice to C++ API files, including *.h, *.cpp, and Makefile.in Platforms: Linux 6.2 (eirene)
* [svn-r5427] Purpose:Binh-Minh Ribler2002-05-161-0/+41
| | | | | | | | | | | | | | | | | | New Feature - per library change Description: Added new member function DataSet::fillMemBuf for the new C API H5Dfill. Quincey's description of H5Dfill is as followed: Added new H5Dfill() routine to fill the elements in a selection for a memory buffer with a fill value. This is a user API wrapper around some internal routines which were needed for the fill-value modifications from Raymond as well as Pedro's code for reducing the size of a chunked dataset. Platforms: SunOS 5.7 (arabica) Linux 6.2 (eirene)
* [svn-r5030] Binh-Minh Ribler2002-03-011-2/+2
| | | | | | | | | | | | Purpose: Small bug fixing Description: Replaced NULL by 0 for initializing or passing null "string". The problem showed up on platinum. Platforms tested: SunOS 5.7 (arabica) Linux 6.2 (eirene) IA-32 Linux Cluster (platinum)
* [svn-r3602] Binh-Minh Ribler2001-03-101-17/+20
| | | | | | | | | | | | | | | | | | | | | Purpose: Usability enhancement Description: - Added more information about the failure to all the throw's, i.e, member function name and more detail about the failure, where appropriate. Also, added exception throws for private functions, such as p_close to provide more specific details. - Added two api functions: Exception::getFuncName() and Exception::getCFuncName() to provide the name of the member function where failure occurs. - Fixed some typos, one of which caused segn. fault in some situations (resetIdComponent was accidentally called twice in a couple of places :) Platforms: arabica (sparc-sun-solaris 2.7)
* [svn-r3337] Binh-Minh Ribler2001-01-311-1/+1
| | | | | | | | | | | Purpose: Small bug fix Description: A stub function has returned type hsize_t but returns -1. Solution: Changed returned value from -1 to 0 Platforms tested: Solaris (arabica)
* [svn-r3199] Binh-Minh Ribler2000-12-231-1/+1
| | | | | | | | | | | | | | | | | | Purpose: bug fix Description: I found a couple of places where virtual destructors were missing and could cause small memory leaks. Also, some destructors were not virtual when they should be. Solution: - added virtual destructors, which also free dynamically allocated memory - added virtual to several destructors - also, fixed several typos Platforms tested: Solaris 2.7 (arabica)
* [svn-r3121] Purpose:Binh-Minh Ribler2000-12-131-1/+1
| | | | | | | | | | | | | | | | | Fix and improve Description: - Put functions that are common to H5File and Group into a prototype class, CommonFG. I didn't do that before because of the fear of the consequences of multiple inheritance, since H5File and Group already inherit from different super classes. I recently read a C++ book and learned to use MI more safely. This change reduced some more of code redundancy. - Added missing const to some function parameters - Added missing return statements for some functions. Platforms tested: Solaris/CC 5.0 (arabica)
* [svn-r3114] Purpose: FixBinh-Minh Ribler2000-12-121-0/+1
| | | | | | | | | | | | | | | | | | | | Description: Dec CC compiler doesn't support some new c++ features. Some typos caused compilation erros on Dec Alpha. Solution: - Added macro BOOL_NOTDEFINED to define bool type on Dec Alpha (gondolin) since its compiler doesn't support bool. - Added macro NO_STATIC_CAST to prevent the use of the new c++ feature static_cast since Dec CC compiler doesn't support. - Added const to parameters of some functions to match the functions' declaration and definition. Typos errors and Dec CC complained. Platform: Solaris (arabica). Also tried to build on Dec Alpha but still not linked due to some missing compiler flags; its compilation went fine though.
* [svn-r3080] Binh-Minh Ribler2000-12-071-0/+207
Purpose: Support portability Description: I forgot that source file extension .C will not work on Windows. Solution: Changed all source file from *.C to *.cpp for portability. Platforms tested: arabica (sparc-sun-solaris 2.7)
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