| Commit message (Collapse) | Author | Age | Files | Lines |
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Platforms tested:
Linux/64 (jelly) (only in comment sections)
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Description:
- Added class DSetAccPropList for the dataset access property list.
- Added wrapper for H5Dget_access_plist to class DataSet
// Gets the access property list of this dataset.
DSetAccPropList getAccessPlist() const;
- Added wrappers for H5Pset_chunk_cache and H5Pget_chunk_cache to class
DSetAccPropList
// Sets the raw data chunk cache parameters.
void setChunkCache(size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0)
// Retrieves the raw data chunk cache parameters.
void getChunkCache(size_t &rdcc_nslots, size_t &rdcc_nbytes, double &rdcc_w0)
- Added two more arguments to H5Location::createDataSet:
const DSetAccPropList& dapl = DSetAccPropList::DEFAULT
const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT
- Added one more argument to H5Location::openDataSet:
const DSetAccPropList& dapl = DSetAccPropList::DEFAULT
Platforms tested:
Linux/64 (jelly)
Linux/32 (jam)
Darwin (osx1010test)
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Description:
Added operator!= to DataType
bool operator!=(const DataType& compared_type)
Platforms tested:
Linux/64 (jelly)
Linux/32 (jam)
Darwin (osx1010test)
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Description:
Applied the typo fixes from user's report.
The previous pull request couldn't be merged because it was too old,
and it was too complicated for me to resolve conflicts.
Platform tested:
Linux/64 (jelly) - very minor
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Description:
- Updated the description of copy constructor for clarification.
- Removed unnecessary comments.
Platforms tested:
Linux/64 (jelly)
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Description:
- Moved the new wrappers committed on Mar 9:
43158f3bb352f374c31556a5d0dc463a09e0b32e
to H5Location and renamed some of them for overloading.
This is because the loc_id in the C APIs can be file, group, dataset,
named datatype, and attribute. Previous implementation was wrong
following some inaccurate C API reference manual.
- Only the following wrappers are modified or added:
+ H5Lcreate_soft: changed name from newLink to link
// Creates a soft link from link_name to target_name.
void link(const char *target_name, const char *link_name,...)
void link(const H5std_string& target_name,...)
+ H5Lcreate_hard: changed name from newLink to link
// Creates a hard link from new_name to curr_name.
void link(const char *curr_name, const Group& new_loc,...)
void link(const H5std_string& curr_name, const Group& new_loc,...)
// Creates a hard link from new_name to curr_name in same location.
void link(const char *curr_name, const hid_t same_loc,...)
void link(const H5std_string& curr_name, const hid_t same_loc,...)
+ H5Ldelete: modified existing functions to add 2nd argument
// Removes the specified link from this location.
void unlink(const char *link_name,
const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)
void unlink(const H5std_string& link_name,
const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)
- copyLink and moveLink were only moved from Group to H5Location, no change
- Added class LinkCreatPropList
- Added overloaded functions H5Location::createGroup to take a link creation
property list
Group createGroup(const char* name, const LinkCreatPropList& lcpl)
Group createGroup(const H5std_string& name, const LinkCreatPropList& lcpl)
- Added wrapper for H5Lget_info() to H5Location
H5L_info_t getLinkInfo(const H5std_string& link_name,...)
Platforms tested:
Linux/64 (jelly)
Linux/ppc64 (ostrich)
Darwin (osx1010test)
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Description:
- Replaced external links with text including the C API name
- Removed links of copyright at the bottom of each page
- Removed logo at top
- Removed document name and version number
Platforms tested:
Linux/32 2.6 (jam) - only documentation
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Description:
- Replaced H5Location::exists with H5Location::nameExists and marked
H5Location::exists as deprecated.
- Miscellaneous test cleanup for consistency.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (jelly)
Darwin (osx1010test)
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Description:
- Removed two inadvertently-added Group constructors in the header file.
There was no implementation.
- Removed deprecated H5Location and H5Object constructors that take an
existing ID.
- Miscellaneous improvements in comments, including updating URLs.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (jelly)
Darwin (osx1010test)
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Description:
- Added VarLenType::VarLenType(const DataType& base_type)
- Marked VarLenType::VarLenType(const DataType* base_type) deprecated
- Added a static wrapper for H5Tdetect_class for PredType
static bool DataType::detectClass(const PredType& pred_type, ...)
- Removed the deprecated function Exception::printError() from code
- Miscellaneous improvements in comments
- Added test functions test_detect_type_class() and test_vltype()
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (jelly)
Darwin (osx1010test)
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Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
Added wrappers for H5Tencode to class DataType and H5Tdecode to
classes DataType and its subclasses.
// Creates a binary object description of this datatype.
void DataType::encode()
// Returns the decoded type from the binary object description.
virtual DataType* DataType::decode() const;
virtual DataType* ArrayType::decode() const;
virtual DataType* CompType::decode() const;
virtual DataType* DataType::decode() const;
virtual DataType* EnumType::decode() const;
virtual DataType* FloatType::decode() const;
virtual DataType* IntType::decode() const;
virtual DataType* StrType::decode() const;
virtual DataType* VarLenType::decode() const;
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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Fixed typos and missing items in function headers, that were revealed
by Doxygen, and revised various comments.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Miscellaneous clean-up: format and comments
Platforms tested:
Linux/64 (jelly)
Darwin (osx1010test)
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Description:
Added wrappers for H5Iis_valid, H5Ps/get_nlinks, H5Tget_create_plist,
H5Oopen, H5Oclose and H5Pset_virtual
// Checks if the given ID is valid.
static bool isValid(hid_t an_id);
// Sets the number of soft or user-defined links that can be
// traversed before a failure occurs.
void setNumLinks(size_t nlinks) const;
// Gets the number of soft or user-defined link traversals allowed
size_t getNumLinks() const;
// Returns a copy of the creation property list of a datatype.
PropList getCreatePlist() const;
// Opens an object within a group or a file, i.e., root group.
hid_t getObjId(const char* name,...);
hid_t getObjId(const H5std_string& name,...);
// Closes an object opened by getObjId().
void closeObjId(hid_t obj_id) const;
// Maps elements of a virtual dataset to elements of the source dataset.
void setVirtual(const DataSpace& vspace, const char *src_fname,...);
void setVirtual(const DataSpace& vspace, const H5std_string src_fname,...);
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Only format changes: mostly tabs vs. spaces
Platforms tested:
Linux/64 (jelly) - very minor
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Description:
Added wrappers H5Location::exists() for H5Lexists.
Added wrapper H5Object::objVersion() to return the header version
of an HDF5 object.
Added new class LinkAccPropList to be used by H5Location::exists()
Added new exception: ObjHeaderIException for H5Object::objVersion()
Rearranged source files in Makefile.am
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
When adding wrappers for H5Lexists, a new class, LinkAccPropList, was
added to the C++ API, triggered complicated circular dependencies. Thus,
some improvement was made to resolve the problems.
- Replaced existing functions openXxxType with individual type constructors
+ Added individual XxxType constructors to replace the existing functions
openXxxType because it's rather awkward to use these functions.
+ Moved openXxxType from H5Location back to CommonFG
+ Put back CommonFG as a baseclass of Group for openXxxType functions.
+ This replacement should improve usability and prevent the problem of
circular dependencies.
- Removed overloaded constructor that takes an Attribute when there is
already one that takes H5Location because Attribute inherits from
H5Location now.
Platforms tested:
Linux/32 2.6 (jam)
Darwin (osx1010test)
Linux/64 (platypus)
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Removed obsolet macros from C++ API:
H5_NO_NAMESPACE, H5_NO_STD, __cplusplus
Leave OLD_HEADER_FILENAME because iostream.h might still be in use,
until further checking is done.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
Jelly
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Description:
Adding user's test revealed a flaw in the fix.
Moved CommonFG's functions in Group to H5Location, so that they
could be called by objects that can be used to specify a location
Also, rearranged many "#include" header files to resolve conflicts.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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trunk:
Description:
Continued rearranging the classes to model the relationship of HDF5
objects more accurately. The changes included:
- in the baseclass list of Attribute, changed "public IdComponent" to
"public H5Location", because location sometime can be specified with
attribute
- moved H5A wrappers in H5Location to H5Object because H5A functions
can't be called on attribute id
- removed the stubs Attribute::iterateAttrs and Attribute::renameAttr
- removed Attribute::getFileName and Attribute::flush, because
H5Location has them
- result of the modified partial class diagram, regarding Attribute
IdComponent
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H5Location AbstractDs
/ \ /
H5Object Attribute
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
Rearranged the classes to model the relationship of HDF5 objects more
accurately. The changes included:
- moved CommonFG's methods to Group
- removed CommonFG from Group's base class list
- removed CommonFG from H5File's base class list and changed
"public H5Location" to "public Group" in the base class list
- CommonFG became unused
- result of the modified partial class diagram:
IdComponent
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H5Location
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H5Object
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/ / \
DadaType Group DataSet
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H5File
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
Removed deprecated functions in previous releases due to missing const.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
- Changed object in catch statements to reference
- Replaced old-style casts or reinterpret_cast with static_cast
- Removed unused name H5Library::need_cleanup
- Removed Exception::printError from documentation
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
- Removed many warnings:
warning: use of old-style cast
warning: enumeration value ‘H5D_VIRTUAL’ not handled in switch
warning: comparison between signed and unsigned
There are others of the same warnings and they will be taken care of
in the next release.
- Made some code reuse between overloads
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
Removed obsolete functions from the documentation. They are still
in the code, however, until the next two releases, just in case.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
Added member function ArrayType::operator= because ArrayType has
pointer data members.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
- Implemented the friend function
void f_PropList_setId(PropList* plist, hid_t new_id)
to work around the same problem described in trunk r26655, for the
API DataSet::getCreatePlist()
- Cleaned up some comments and obsolete functions
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
- Removed H5Library::instance because it is unnecessary. All H5Library's
methods are static. This, in turn, removed the memory leaks by
H5Library::instance not being deleted.
- Added ObjCreatPropList::deleteConstants to atexist() list
- Cleaned up comments and format inconsistencies with 1.8
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
Added wrappers for H5P[s/g]et_attr_phase_change and H5P[s/g]et_attr_creation_order
// Sets attribute storage phase change thresholds.
void setAttrPhaseChange(unsigned max_compact = 8, unsigned min_dense = 6)
// Gets attribute storage phase change thresholds.
void getAttrPhaseChange(unsigned& max_compact, unsigned& min_dense)
// Sets tracking and indexing of attribute creation order.
void setAttrCrtOrder(unsigned crt_order_flags)
// Gets tracking and indexing settings for attribute creation order.
unsigned getAttrCrtOrder()
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
Merged from hdf5_CppAPI_Constants
r27942:
------
Description:
- Added H5dont_atexit() to getPredType and all the getConstant's to prevent
the C library from terminating before the C++ library cleanup.
- More cleanup and added more comments
r27923:
------
- Updated more comments and moved some things around for consistency
- Removed check for "new" failure, exceptions would be thrown
r27922:
------
Description:
Added function headers and more comments for clarity.
r27917:
------
Description:
The C++ library has several types of global constants from different
classes, such as PropList, PredType, DataSpace, etc... Previously,
these global constants were declared statically and the C++ library used
a constant, called PredType::AtExit, to detect when all the global
contants are destroyed then close the C library (H5close). This method
relied on the order of the constants being created and destroyed and
that PredType constants be the last to be destroyed. In September 2015,
it was recognized that the order in which the global constants were
created and destroyed was actually undefined, thus can be different
between different compilers. This resulted in failure when compilers
destroy PredType constants before others because when PredType::AtExit
was destroyed, the C library was closed, so when the constants of other
classes such as PropList or DataSpace were being deleted, the C library
would not be available.
Solution:
The static approach is changed to dynamic. In order to avoid an impact
on existing applications, the static global constants are changed to
constant references to the dynamically allocated objects.
A detailed explanation of the new method and a description of the
changes are in a Design Notes at the end of the file H5PredType.cpp.
New functions added to support the new methods are listed below.
class H5Library:
// Returns a singleton H5Library to initialize the global
// constants, invoked in IdComponent default constructor
static H5Library* getInstance(); // public
// Registers cleanup and terminating functions with atexit(),
// called in IdComponent default constructor
static void initH5cpp(void); // public
// Calls H5close to terminate the library, registered with
// atexit(), as the last thing to be done.
static void termH5cpp(void); // public
class PredType:
// Creates the constants
static void makePredTypes(); // private
// Calls makePredTypes to create the constants and returns
// the dummy constant PREDTYPE_CONST;
static PredType* getPredTypes(); // private
class DataSpace:
// Creates the constant
static DataSpace* getConstant(); // private
class PropList:
// Creates the constant
static PropList* getConstant(); // private
class DSetCreatPropList:
// Creates the constant
static DSetCreatPropList* getConstant(); // private
class DSetMemXferPropList:
// Creates the constant
static DSetMemXferPropList* getConstant(); // private
class FileCreatPropList:
// Creates the constant
static FileCreatPropList* getConstant(); // private
class FileAccPropList:
// Creates the constant
static FileAccPropList* getConstant(); // private
This function is added to PredType, DataSpace, PropList, and the four
subclasses of PropList:
// Deletes the constant
static void deleteConstants(); // public
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
- In DataType::DataType(const PredType& pred_type), using DataType::copy
will invoke DataType::close() unnecessarily, which will produce undefined
behavior. Changed to call H5Tcopy directly, code reuse is not useful in
this case.
- Also, fixed CommonFG::childObjVersion to return expected value outside of
an if/else block.
Platforms tested:
Linux/ppc64 (ostrich)
Linux/64 (platypus)
Linux/32 2.6 (jam)
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Description:
When copy constructor or constructor that takes an existing id is invoked,
the C ref counter stays the same but there is an extra C++ object which
later is destroyed and may cause the HDF5 id to be closed prematurely. The
C++ library needs to increment the ref counter in these situations, so that
the C library will not close the id when it is still being referenced.
However, the incrementing of ref count left some objects opened at the end
of the program, perhaps, due to compiler's optimization on cons/destructors. The constructor, that takes an existing id, needs to increment the counter
but it seems that the matching destructor wasn't invoked. The workaround
is to have a function for each class that has "id" that only sets the id
and not increment the ref count for the library to use in these situations.
These functions are "friend" and not public.
The friend functions are:
void f_Attribute_setId(Attribute *, hid_t)
void f_DataSet_setId(DataSet *, hid_t)
void f_DataSpace_setId(DataSpace *, hid_t)
void f_DataType_setId(DataType *, hid_t)
Platforms tested:
Linux/64 (platypus)
Linux/32 2.6 (jam gnu and Intel 15.0)
SunOS 5.11 (emu)
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Description:
Added wrappers for C functions H5P[s/g]et_libver_bounds and wrappers
for getting object header version
// Sets bounds on versions of library format to be used when creating
// or writing objects.
void setLibverBounds(H5F_libver_t libver_low, H5F_libver_t libver_high) const;
// Gets the current settings for the library version format bounds.
void getLibverBounds(H5F_libver_t& libver_low, H5F_libver_t& libver_high) const;
// Returns the object header version of an object in a file or group,
// given the object's name.
unsigned childObjVersion(const char* objname) const;
unsigned childObjVersion(const H5std_string& objname) const;
Platforms tested:
Linux/64 (platypus)
Linux/32 2.6
SunOS 5.11
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Description:
- Changed DataType::operator= to simply copy the id of rhs instead of
calling H5Tcopy because, when the operator= is invoked, a different
datatype id is created and it won't have the same characteristics as
rhs', specifically, if the rhs represents a named datatype, "this"
would still be a transient datatype.
- Added a DataType constructor that takes a PredType object, and this
constructor will cause H5Tcopy to generate another datatype id, from a
predefined datatype.
- Fixed various mistakes in tests.
Platforms tested:
Linux/64 (platypus)
Linux/32 2.6 (jam/gnu and jam/icc 15)
SunOS 5.11 (emu development/production)
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Description:
The following two constructors of classes: AbstractDs, IdComponent,
H5Location, and H5Object are no longer appropriate after the data member
"id" had been moved from IdComponent to the sub-classes.
The copy constructors are noop and will be generated by the compilers if
needed so they can be removed in 1.8.15 without effecting applications. The
other constructors will be removed from 1.10 release, and then from 1.8 if
their removal does not raise any problems in at least two 1.10 releases.
<Classname>(const hid_t h5_id);
<Classname>(const <Classname>& original);
Deprecation warnings are added to each of these classes.
The other classes are changed to call the default constructor instead of
one of the constructors above.
Platforms tested:
Linux/64 (platypus)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
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Description:
- Used H5I_INVALID_HID instead of 0 to initialized member "id" in classes
that represent HDF5 objects. For PropList, H5P_DEFAULT has to be used
instead of H5I_INVALID_HID.
- Added try/catch block to some dynamically allocating memory code and
re-throw the bad_alloc exception with a message informing the location of
the failure.
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
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Put back overloaded functions for backward compatibility:
- were replaced by better prototyped versions, such as Attribute::getName.
- were modified to add const to constant arguments.
Added notes for future removal in documentation.
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
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Fixed some minor documentation mistakes.
Updated configuration file for Doxygen.
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
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Description:
- Added const to const arguments
- Fixed miscellaneous comments
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
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functions that return library-allocated memory. The test and tool
code were modified to use this new function where it's appropriate.
Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551
Tested on:
64-bit Windows 7 w/ VS2012
32-bit LE linux w/ parallel and fortran (jam)
32-bit LE linux w/ fortran and C++ (jam)
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- Added a lot of documentation to classes for Reference Manual.
- Fixed some format inconsistencies
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)/PGI compilers
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Description:
- The failure in daily test was caused by missing initialization of member
"id" in a few constructors. This is now fixed.
- Added two overloaded H5Location::setComment
- Improved some error reporting in H5Location
- Improved error reporting in tests
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/64 2.6 (koala)/PGI compilers
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Description:
- Improved the changes in revisions r22836 and r23438, mainly on the
wrappers of reference, dereference, get region, and set/getcomment.
- Added more tests.
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/ppc64 (ostrich)
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Description:
- Completed the changes in revisions r22836 and r23438 with improvement
on wrappers such as reference, dereference, get region, and set/getcomment.
- Added more tests.
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/ppc64 (ostrich)
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Fixed comments, documentation, and mis-matched DOXYGEN_SHOULD_SKIP_THIS pairs.
Platforms tested:
Linux/32 2.6 (jam)
Regenerated and verified generated documentation.
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Description:
Fixed miscellaneous inconsistencies and typos, which also took
care of the failure in Packet Table test on daily test today.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)
Mac Lion (duck)
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