| Commit message (Collapse) | Author | Age | Files | Lines |
|
|
| |
The macro is no longer necessary now that we require C++11.
|
|
|
|
|
|
|
|
|
|
| |
* Added more C++11 override keywords
* Format updates in src/H5Tconv.c.
* Committing clang-format changes
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
|
|
|
| |
Added H5_OVERRIDE macro for compatibility with both C++11 and older.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
* Fixed many -Wreserved-id-macro warnings by fixing header guard spelling
Removed leading underscore(s) from header guard spelling. Used 2 regexes:
` _H5(.*)_H`
` __H5(.*)_H`
Applied case-insensitively to only .h files.
* Modified scripts that generate header files to not use underscore prefix
Interestingly, there was already no leading underscore in the trailing comment at the end of the file
* Fixed remaining -Wreserved-id-macro warning not caught by regex
|
|
|
|
|
|
| |
* Modify temporary rpath for testing in java example scripts.
* Update URL in source file Copyright headers for web copy of COPYING
file - files not in src or test.
|
| |
|
| |
|
| |
|
|
|
|
|
|
|
|
| |
Description:
- Updated the description of copy constructor for clarification.
- Removed unnecessary comments.
Platforms tested:
Linux/64 (jelly)
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
- Removed two inadvertently-added Group constructors in the header file.
There was no implementation.
- Removed deprecated H5Location and H5Object constructors that take an
existing ID.
- Miscellaneous improvements in comments, including updating URLs.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (jelly)
Darwin (osx1010test)
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Moved H5Location::getNumObjs to Group::getNumObjs (i.e., H5Gget_info)
Switched reinterpret_cast to static_cast in H5Object::iterateAttrs
Miscellaneous cleanup
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
|
|
|
|
|
|
|
|
|
|
| |
hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
|
|
|
|
|
|
|
| |
Miscellaneous clean-up: format and comments
Platforms tested:
Linux/64 (jelly)
Darwin (osx1010test)
|
|
|
|
|
|
| |
Only format changes: mostly tabs vs. spaces
Platforms tested:
Linux/64 (jelly) - very minor
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Added wrappers for H5Fget_info2, H5Inmembers, and H5Itype_exists
// Gets general information about this file.
void getFileInfo(H5F_info2_t& file_info) const;
// Returns the number of members in a type.
static hsize_t getNumMembers(H5I_type_t type);
// Determines if an element type exists.
static bool typeExists(H5I_type_t type);
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (jelly)
Darwin (osx1010test)
|
|
|
|
|
|
|
|
|
|
|
|
| |
Removed obsolet macros from C++ API:
H5_NO_NAMESPACE, H5_NO_STD, __cplusplus
Leave OLD_HEADER_FILENAME because iostream.h might still be in use,
until further checking is done.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
Jelly
|
|
|
|
|
|
|
|
|
| |
Description:
Revised class brief description and other comments for up-to-date info.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Rearranged the classes to model the relationship of HDF5 objects more
accurately. The changes included:
- moved CommonFG's methods to Group
- removed CommonFG from Group's base class list
- removed CommonFG from H5File's base class list and changed
"public H5Location" to "public Group" in the base class list
- CommonFG became unused
- result of the modified partial class diagram:
IdComponent
|
H5Location
/
H5Object
|
/ / \
DadaType Group DataSet
|
H5File
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
|
|
|
|
|
|
|
|
|
| |
Description:
Removed deprecated functions in previous releases due to missing const.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
- Put back the UNUSED parameters in dsets test because the change to remove
the warning last time caused failure in setting filter, in turn, caused
failure in the test with such obscure/unrelated errors!
- Added incRefCount() to other constructors that missed from last time.
Platforms tested:
Linux/64 (platypus)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Per user Jason Newton request, the following constructor is added:
H5File(hid_t existing_id);
Also, fixed H5File::openFile to close current file first before re-using
the object.
Platforms tested:
Linux/64 (platypus)
Linux/32 2.6 (jam gnu and Intel 15.0)
SunOS 5.11 (emu)
|
|
|
|
|
|
|
|
|
|
|
| |
Put back overloaded functions for backward compatibility:
- were replaced by better prototyped versions, such as Attribute::getName.
- were modified to add const to constant arguments.
Added notes for future removal in documentation.
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
|
|
|
|
|
|
|
|
|
|
| |
Description:
- Added const to const arguments
- Fixed miscellaneous comments
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
|
|
|
|
|
|
|
|
|
|
| |
- Added a null terminator to the comment returned from the C call, in
getComment methods
- Some minor cleanup
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
Linux/64 2.6 (platypus)/PGI compilers
|
|
|
|
|
|
|
|
|
| |
- Added a lot of documentation to classes for Reference Manual.
- Fixed some format inconsistencies
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)/PGI compilers
|
|
|
|
|
|
|
|
| |
Description:
Changed header guards from single underscore to double underscore.
Platforms tested:
Linux/32 2.6 (jam) - very minor
Linux/64 2.6 (koala)/PGI compilers
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
- The failure in daily test was caused by missing initialization of member
"id" in a few constructors. This is now fixed.
- Added two overloaded H5Location::setComment
- Improved some error reporting in H5Location
- Improved error reporting in tests
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/64 2.6 (koala)/PGI compilers
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
- Improved the changes in revisions r22836 and r23438, mainly on the
wrappers of reference, dereference, get region, and set/getcomment.
- Added more tests.
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/ppc64 (ostrich)
|
| |
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
- Completed the changes in revisions r22836 and r23438 with improvement
on wrappers such as reference, dereference, get region, and set/getcomment.
- Added more tests.
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/ppc64 (ostrich)
|
|
|
|
|
|
|
| |
Fixed comments, documentation, and mis-matched DOXYGEN_SHOULD_SKIP_THIS pairs.
Platforms tested:
Linux/32 2.6 (jam)
Regenerated and verified generated documentation.
|
|
|
|
|
|
|
|
|
|
| |
Description:
Fixed miscellaneous inconsistencies and typos, which also took
care of the failure in Packet Table test on daily test today.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)
Mac Lion (duck)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
In this bug, H5File doesn't have the ability to create attribute. The
following changes will provide that functionality and several others that
were also missing:
- Added an abstract class H5Location in between IdComponent and H5Object.
- New class structure of IdComponent, H5Location, H5Object, H5File
IdComponent
|
H5Location
/ \
H5Object H5File
- Wrappers in H5Object were moved to H5Location because the related C
functions take either file, group, dataset, or named datatype ID.
- Added wrapper for H5Rget_obj_type2
- Added tests for file attributes and H5Rget_obj_type2 wrapper
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)
SunOS 5.10 (linew)
|
|
|
|
|
|
|
|
| |
H5Fget_obj_count to ssize_t and modified
C++ and Fortran API functions. This is for bug #1245.
Tested on smirom, linew, and kagiso.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Changed all subclasses' setId to protected p_setId and put back setId
in IdComponent. p_setId is used in the library where the id provided
by a C API passed on to user's application in the form of a C++ API
object, which will be destroyed properly, and so p_setId does not
call incRefCount. On the other hand, the public version setId is
used by other applications, in which the id passed to setId needs
to be closed properly by the application, so setId must call incRefCount
for the new object to prevent prematurely closing of the id.
Platforms tested:
Linux 2.6 (kagiso)
SunOS 5.10 (linew)
FreeBSD (duty)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
The class hierarchy was revised to address the problem reported in
bugzilla #1068. Classes AbstractDS and Attribute are moved out of
H5Object. Class Attribute now multiply inherits from IdComponent and
AbstractDs and class DataSet from H5Object and AbstractDs.
In addition, data member IdComponent::id was moved into subclasses:
Attribute, DataSet, DataSpace, DataType, H5File, Group, and PropList.
Platforms tested:
SunOS 5.10 (linew)
Linux 2.6 (kagiso)
FreeBSD (duty)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Add H5Rget_obj_type() to the API versioning and switch internal
routines to use H5Rget_obj_type2()
Misc. other code cleanups, etc.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
AIX/32 5.3 (copper)
Solaris/32 2.10 (linew)
Mac OS X/32 10.4.10 (amazon)
|
|
|
|
|
|
|
|
|
| |
copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Wrappers of H5Rcreate had incorrect prototypes.
Solution:
Added these overloaded functions for H5Rcreate wrapper to IdComponent:
void reference(void* ref, const char* name, DataSpace& dataspace,
H5R_type_t ref_type = H5R_DATASET_REGION) const;
void reference(void* ref, const char* name) const;
void reference(void* ref, const H5std_string& name) const;
Added these overloaded functions for H5Rdereference:
void dereference(IdComponent& obj, void* ref);
DataSet(IdComponent& obj, void* ref);
Group(IdComponent& obj, void* ref);
DataType(IdComponent& obj, void* ref);
The incorrect wrappers will be removed after announcing.
Platform tested:
Linux 2.4 (heping)
AIX 5.1 (copper)
SunOS 5.8 64-bit (sol)
|
|
|
|
|
|
|
|
|
|
| |
Description:
Fixed typos and re-arranged some functions to be in sync with 1.6.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.9 (shanti)
AIX 5.1 (copper)
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Changed to alias string instead of std, i.e. H5std_string instead
of H5std, because the old way wasn't working when std didn't exist.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
HPUX 11.00 (kelgia) - this was the problematic platform but I wasn't
able to test before.
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Added alias H5_std so either the global or std namespace can be
used, depending on H5_NO_STD.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
AIX 5.1 (copper)
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Added missing member function H5File::flush
Fixed parameters passed to H5Awrite
Other typos
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Added member function H5File::openFile and overloaded for convenience.
Added overloaded getObjinfo to skip the middle parameter.
Changed
StrType(const size_t& size);
to
StrType(const int dummy, const size_t& size);
because the first one clashed with
StrType(const hid_t existing_id);
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
HPUX 11.00 (kelgia)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
There was a workaround for predefined types, in the C++ library,
implemented when the C++ library was handling the reference
counting of the object ids on its own. Currently, the C++ library
is using the available APIs from the C library for that purpose,
and there were bugs reported involving that part of the C++ library.
So, I decided to remove the workaround completely.
Also, improved the use of std members.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
Linux 2.4 w/PGI (colonelk)
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Tweak copyright on C++ source files to reduce whining by copyright checking
script.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/C++
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Added wrapper for H5Iget_type.
Added try/catch to many APIs that call private functions so that more
specific information can be provided at failure.
Added IdComponent::inMemFunc to help providing specific info.
Added const to parameters of several functions that missed that.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
AIX 5.1 (copper)
IRIX64 with -n32 (modi4)
HPUX 11.00 (kelgia)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Added the following to the C++ library
+ overloaded functions:
string CommonFG::getObjnameByIdx(hsize_t idx)
H5T_order_t AtomType::getOrder()
+ wrappers for H5*close
+ wrappers for H5Arename, H5Aget_storage_size, and H5Dget_storage_size
Platforms tested:
Linux 2.4 (heping)
AIX 5.1 (copper)
SunOS 5.8 64-bit (sol)
|