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* [svn-r25020] Description:Binh-Minh Ribler2014-04-121-0/+2
| | | | | | | | | | - Fixed a few comments that Doxygen gave warnings on. - Removed stylesheet from configuration so Doxygen will use the default stylesheet and removed the CLANG-related lines to eliminate another error since we're not using that feature, so the lines should not present. (from cpp_doc_config) Platforms tested: Linux/32 2.6 (jam) - only changing comments
* [svn-r24291] Description:Binh-Minh Ribler2013-10-151-11/+1
| | | | | | | | | - Added a lot of documentation to classes for Reference Manual. - Fixed some format inconsistencies Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) Linux/64 2.6 (koala)/PGI compilers
* [svn-r24188] Purpose: Fixed bug introduced in r24163Binh-Minh Ribler2013-09-231-28/+9
| | | | | | | | | | | | | Description: - The failure in daily test was caused by missing initialization of member "id" in a few constructors. This is now fixed. - Added two overloaded H5Location::setComment - Improved some error reporting in H5Location - Improved error reporting in tests Platforms tested: Linux/32 2.6 (jam) SunOS 5.11 (emu) Linux/64 2.6 (koala)/PGI compilers
* [svn-r24178] Back out the changes that cause daily test to fail r24163Binh-Minh Ribler2013-09-201-11/+6
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* [svn-r24163] Purpose: More on HDFFV-7520 and HDFFV-533Binh-Minh Ribler2013-09-191-6/+11
| | | | | | | | | | | | Description: - Improved the changes in revisions r22836 and r23438, mainly on the wrappers of reference, dereference, get region, and set/getcomment. - Added more tests. Platforms tested: Linux/32 2.6 (jam) SunOS 5.11 (emu) Linux/ppc64 (ostrich)
* [svn-r24162] backing out a commit that includes wrong filesBinh-Minh Ribler2013-09-191-11/+6
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* [svn-r24161] Purpose: More on HDFFV-7520 and HDFFV-533Binh-Minh Ribler2013-09-191-6/+11
| | | | | | | | | | | Description: - Completed the changes in revisions r22836 and r23438 with improvement on wrappers such as reference, dereference, get region, and set/getcomment. - Added more tests. Platforms tested: Linux/32 2.6 (jam) SunOS 5.11 (emu) Linux/ppc64 (ostrich)
* [svn-r24143] Description:Binh-Minh Ribler2013-09-161-1/+4
| | | | | | | Fixed comments, documentation, and mis-matched DOXYGEN_SHOULD_SKIP_THIS pairs. Platforms tested: Linux/32 2.6 (jam) Regenerated and verified generated documentation.
* [svn-r22845] Purpose: Misc fixesBinh-Minh Ribler2012-09-281-20/+0
| | | | | | | | | | Description: Fixed miscellaneous inconsistencies and typos, which also took care of the failure in Packet Table test on daily test today. Platforms tested: Linux/32 2.6 (jam) Linux/64 2.6 (koala) Mac Lion (duck)
* [svn-r22836] Purpose: Fix bug HDFFV-533 and add other missing functionsBinh-Minh Ribler2012-09-271-27/+0
| | | | | | | | | | | | | | | | | | | | | | Description: In this bug, H5File doesn't have the ability to create attribute. The following changes will provide that functionality and several others that were also missing: - Added an abstract class H5Location in between IdComponent and H5Object. - New class structure of IdComponent, H5Location, H5Object, H5File IdComponent | H5Location / \ H5Object H5File - Wrappers in H5Object were moved to H5Location because the related C functions take either file, group, dataset, or named datatype ID. - Added wrapper for H5Rget_obj_type2 - Added tests for file attributes and H5Rget_obj_type2 wrapper Platforms tested: Linux/32 2.6 (jam) Linux/64 2.6 (koala) SunOS 5.10 (linew)
* [svn-r22235] Purpose: Fixed bugs HDFFV-2761 & HDFFV-7852Binh-Minh Ribler2012-04-021-15/+15
| | | | | | | | | | | | | | | | | | | | Description: - Replaced PredType::NotAtexit() with PredType::AtExit(H5CPP_EXITED); and used PredType::AtExit as a flag to detect when all predefined types have been destroyed. Then, H5close will be called to terminate the library after its being re-initiated when the PredType destructors were activated. This change removed the memory leaks shown by the user's sample program. - Added H5CPP_EXITED for PredType::AtExit to use as a flag - Updated some inaccurate comments - Removed stream functions from FileAccPropList - Replaced H5_VMS with appropriate macro in H5IdComponent.cpp - Corrected many URLs (hdfgroup vs. ncsa) in comments - Replaced std::string with H5std_string in comments Platforms tested: Linux/32 2.6 (jam) Linux/64 2.6 (amani) SunOS 5.10 (linew)
* [svn-r19395] Purpose: Fixed bug 1903Binh-Minh Ribler2010-09-161-4/+2
| | | | | | | | | | | Description: After a C++ API object is closed, its id should be reset regardless of the reference count of the underlying HDF5 object. User reported the bug for Group, but it's applicable to all other objects. Fixed. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r18197] Description:Quincey Koziol2010-01-301-1/+1
| | | | | | | | | Trim trailing whitespace from source code files with this command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r15959] Description:Binh-Minh Ribler2008-10-271-8/+49
| | | | | | | | | | | | Added missing wrappers for H5Rdereference. Also, for these wrappers, improved exception handlings to report specific overloaded functions, where failure occurs. Will do the same for more functions later... Platforms tested: Linux 2.6 (kagiso) SunOS 5.10 (linew) FreeBSD (duty)
* [svn-r15628] Description:Quincey Koziol2008-09-161-1/+1
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15407] Purpose: Fix bugBinh-Minh Ribler2008-07-251-3/+3
| | | | | | | | | | | | | | | | | Description: Changed all subclasses' setId to protected p_setId and put back setId in IdComponent. p_setId is used in the library where the id provided by a C API passed on to user's application in the form of a C++ API object, which will be destroyed properly, and so p_setId does not call incRefCount. On the other hand, the public version setId is used by other applications, in which the id passed to setId needs to be closed properly by the application, so setId must call incRefCount for the new object to prevent prematurely closing of the id. Platforms tested: Linux 2.6 (kagiso) SunOS 5.10 (linew) FreeBSD (duty)
* [svn-r15395] When an attribute was opened twice and data was written with ↵Raymond Lu2008-07-221-7/+4
| | | | | | | | | | | one of the handles, the file didn't have the data. It happened because each handle had its own object structure, and the empty one overwrote the data with fill value. This is fixed by making some attribute information like the data be shared in the attribute structure. Tested on smirom, kagiso, and linew.
* [svn-r15309] Purpose: Fixed bugsBinh-Minh Ribler2008-07-021-48/+60
| | | | | | | | | | | | | | | | Description: The class hierarchy was revised to address the problem reported in bugzilla #1068. Classes AbstractDS and Attribute are moved out of H5Object. Class Attribute now multiply inherits from IdComponent and AbstractDs and class DataSet from H5Object and AbstractDs. In addition, data member IdComponent::id was moved into subclasses: Attribute, DataSet, DataSpace, DataType, H5File, Group, and PropList. Platforms tested: SunOS 5.10 (linew) Linux 2.6 (kagiso) FreeBSD (duty)
* [svn-r14148] Description:Quincey Koziol2007-09-141-0/+2
| | | | | | | | | | | | | | | | Add H5Rget_obj_type() to the API versioning and switch internal routines to use H5Rget_obj_type2() Misc. other code cleanups, etc. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 2.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12795] Purpose: Fixing bugBinh-Minh Ribler2006-10-221-24/+32
| | | | | | | | | | | | | | | | | | | | | | | | | Description: Wrappers of H5Rcreate had incorrect prototypes. Solution: Added these overloaded functions for H5Rcreate wrapper to IdComponent: void reference(void* ref, const char* name, DataSpace& dataspace, H5R_type_t ref_type = H5R_DATASET_REGION) const; void reference(void* ref, const char* name) const; void reference(void* ref, const H5std_string& name) const; Added these overloaded functions for H5Rdereference: void dereference(IdComponent& obj, void* ref); DataSet(IdComponent& obj, void* ref); Group(IdComponent& obj, void* ref); DataType(IdComponent& obj, void* ref); The incorrect wrappers will be removed after announcing. Platform tested: Linux 2.4 (heping) AIX 5.1 (copper) SunOS 5.8 64-bit (sol)
* [svn-r12404] Purpose: Fix typos/formatsBinh-Minh Ribler2006-06-051-7/+7
| | | | | | | | | | Description: Fixed typos and re-arranged some functions to be in sync with 1.6. Platforms tested: Linux 2.4 (heping) SunOS 5.9 (shanti) AIX 5.1 (copper)
* [svn-r12368] Purpose: Fixed bugBinh-Minh Ribler2006-05-231-11/+12
| | | | | | | | | | | | | | | | | Description: Shanti compiler destroy unnamed objects later than others, which caused some reference counting test fail. Revised the test so that destructors are called at the same time, regardless the differences of compiler implementation. Revised some constructors, close, operator=, and destructors to make sure that all the object ids are handled properly. Platforms tested: Linux 2.4 (heping) SunOS 5.9 (shanti) HPUX 11.00 (kelgia) AIX 5.1 (copper)
* [svn-r12200] Purpose: MaintenanceBinh-Minh Ribler2006-04-051-3/+3
| | | | | | | | | | | | Description: Changed to alias string instead of std, i.e. H5std_string instead of H5std, because the old way wasn't working when std didn't exist. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) HPUX 11.00 (kelgia) - this was the problematic platform but I wasn't able to test before.
* [svn-r12185] Purpose: Code cleanupBinh-Minh Ribler2006-03-311-3/+0
| | | | | | | | Description: Removed an empty #ifdef block that was left by mistake. Platforms tested: Linux 2.4 (heping) - very minor
* [svn-r12180] Purpose: MaintenanceBinh-Minh Ribler2006-03-301-6/+3
| | | | | | | | | | | Description: Added alias H5_std so either the global or std namespace can be used, depending on H5_NO_STD. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) AIX 5.1 (copper)
* [svn-r11755] Purpose: Code improvementBinh-Minh Ribler2005-12-031-2/+9
| | | | | | | | | | | | | | | | | Description: There was a workaround for predefined types, in the C++ library, implemented when the C++ library was handling the reference counting of the object ids on its own. Currently, the C++ library is using the available APIs from the C library for that purpose, and there were bugs reported involving that part of the C++ library. So, I decided to remove the workaround completely. Also, improved the use of std members. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) Linux 2.4 w/PGI (colonelk)
* [svn-r11487] Purpose:Quincey Koziol2005-10-011-12/+12
| | | | | | | | | | | Code cleanup Description: Tweak copyright on C++ source files to reduce whining by copyright checking script. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++
* [svn-r11264] Purpose: Additional code improvementBinh-Minh Ribler2005-08-181-0/+3
| | | | | | | | | | Description: Used "using" declaration and directive better to reduce namespace pollution. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol)
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-8/+8
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11206] Purpose: Additional wrapper/Code improvementBinh-Minh Ribler2005-08-081-10/+43
| | | | | | | | | | | | | | | | Description: Added wrapper for H5Iget_type. Added try/catch to many APIs that call private functions so that more specific information can be provided at failure. Added IdComponent::inMemFunc to help providing specific info. Added const to parameters of several functions that missed that. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) AIX 5.1 (copper) IRIX64 with -n32 (modi4) HPUX 11.00 (kelgia)
* [svn-r11060] Purpose: Fix bug (reported by user)Binh-Minh Ribler2005-07-101-6/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: The use of FileCreatPropList::DEFAULT sometimes caused failure in the reference counting area. This occurs to all the default property lists, which also include FileAccPropList::DEFAULT, DSetCreatPropList::DEFAULT, and DSetMemXferPropList::DEFAULT. H5P_DEFAULT was used to create these default prop lists and because its value is 0, the id of these prop lists are 0, which is rejected by the H5I functions during the reference counting. Solution: The main action to fix the above problem was to use H5P_FILE_CREATE H5P_FILE_ACCESS H5P_DATASET_CREATE H5P_DATASET_XFER to define the default property lists accordingly. Yet, when this fix was applied, some bug in reference counting was revealed. It appeared that some ids were not incremented but were passed in for decrementing. The following actions were then taken to fix and improve the current use of reference counting H5I functions. * added private func IdComponent::p_valid_id to verify that the id is a valid id and can be passed into an H5I function * used p_valid_id to validate an id before calling an H5I functions in the reference-counting member functions incRefCount, decRefCount, and getCounter * changed to use member function incRefCount, decRefCount, and getCounter instead of the C APIs H5Iinc_ref, H5Idec_ref, and H5Iget_ref throughout IdComponent. In addition, overloadings were added for incRefCount, decRefCount, and getCounter to take an id different than the id of the current instance; they can be convenient during debugging. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) AIX 5.1 (copper)
* [svn-r10825] Purpose: Fix RM bugBinh-Minh Ribler2005-05-291-0/+1
| | | | | | | | | | | | | | Description: Doxygen 1.4.2 has a bug that when an \exception immediately follows a \brief, the exception will be displayed prominently in the brief section. Solution: Temporarily added /// to after \brief to work around this problem and notified the Doxygen's author. Platforms tested: Linux 2.4 (heping) - only in documentation sections
* [svn-r10212] Purpose: Added more wrappersBinh-Minh Ribler2005-03-141-0/+17
| | | | | | | | | | | | | | | Description: Added the following to the C++ library + overloaded functions: string CommonFG::getObjnameByIdx(hsize_t idx) H5T_order_t AtomType::getOrder() + wrappers for H5*close + wrappers for H5Arename, H5Aget_storage_size, and H5Dget_storage_size Platforms tested: Linux 2.4 (heping) AIX 5.1 (copper) SunOS 5.8 64-bit (sol)
* [svn-r10050] Purpose: Fix bugzilla #241Binh-Minh Ribler2005-02-201-0/+3
| | | | | | | | | | | Description: Checked return value from C API for failure condition. Added/Modified some comments appropriately. Platforms tested: Linux 2.4 (heping) AIX 5.1 (copper) - tests passed but there were some old warnings about duplicate symbols on std::string; I'll check on that.
* [svn-r9133] Purpose: Clean up codeBinh-Minh Ribler2004-08-211-1/+1
| | | | | | | | | | | Description: The private function p_close was removed previously, but I inadvertently put it back in a few places, while transferring the changes from 1.6 branch. These are removed now. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene)
* [svn-r9129] Purpose: Updating documentationBinh-Minh Ribler2004-08-201-8/+8
| | | | | | | | | | Description: Updated various function headers for the RM as reviewing progresses. Rearranged functions in header files for more sensible look of the RM. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene)
* [svn-r9046] Purpose:Binh-Minh Ribler2004-08-071-88/+4
| | | | | | | | | | | | | | | | | | | Code cleanup Description: DataType::commit had incorrect parameter, H5Object. Changed it to CommonFG, for H5File and Group. The change caused additional header files needed for several other cpp files. Moved some functions from Group into the base class CommonFG for H5File too. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene) Misc. update:
* [svn-r8602] Purpose:Quincey Koziol2004-06-011-21/+3
| | | | | | | | | | | Code update Description: Update C++ wrappers to use new ID reference counting mechanisms. Platforms tested: FreeBSD 4.9 (sleipnir) w/C++ Too focused to require h5committest
* [svn-r8588] Purpose:Binh-Minh Ribler2004-05-271-15/+65
| | | | | | | | | | | | | | | | | | | Add C++ wrappers - incrementally check-in Description Added wrapper for these C APIs: H5Rcreate H5Rget_obj_type H5Rget_region This is an incremental check-in to preserve the code, corresponding tests will follow in a few weeks. Platforms: Linux 2.4 (eirene) I'm checking the code out and test on arabica too. Misc. update:
* [svn-r8555] Purpose:Binh-Minh Ribler2004-05-201-16/+86
| | | | | | | | | | | | | | Add documentation Description: Added doxygen documentation and removed incorrect comments. Platforms: SunOS 5.7 (arabica) Linux 2.4 (eirene) Windows 2000 Misc. update:
* [svn-r8269] Purpose:Binh-Minh Ribler2004-03-221-1/+1
| | | | | | | | | | | | | | | | | | | | | Cleaning up warnings Description: Many exception constructors have warnings about reference to temporary location because of the parameter initialization, for example, "const string& var = 0." Solution: Changed "string&" parameters to pass by value for these constructors. Consequently, passing string by value also takes care of char pointers so the overloaded constructors for char pointers are then removed. Also, instead of setting Exception::detailMessage to null string, I set it to DEFAULT_MSG ("No detailed information provided") by default. Platforms: SunOS 5.7 (arabica) Linux 2.4 (eirene) IA-64 (titan)
* [svn-r6990] Purpose:Binh-Minh Ribler2003-06-071-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix and minor code enhancement Description: Missing methods to read/write C++ String for an attribute and a dataset. Solution: Added overloaded functions read and write to H5::Attribute and H5::DataSet. Also, added another constructor StrType so the need to separately set the length of the string type can be eliminated. It's minor but convenient. Made some minor changes to make error messages more readable. Platforms: SunOS 5.7 (arabica) Linux 2.4 (eirene) IRIX 6.5.11 (modi4) HPUX 11.00 (kelgia)
* [svn-r6509] Purpose:Binh-Minh Ribler2003-03-201-1/+6
| | | | | | | | | | | | | | | | | | | | | Adding new platform support Description: Added support for the C++ API on hpux11.00 with the compiler aCC. Because aCC doesn't use "std," a new macro H5_NO_STD is provided and used where "std" is presented in the library. In addition, changed several cout's when reporting errors to cerr's. Platforms tested: HPUX 11.00 (kelgia) Linux 2.2x (eirene) IRIX 6.5.11 (modi4) SunOS 5.7 (arabica) - by Elena Misc. update:
* [svn-r6303] Purpose:Binh-Minh Ribler2003-01-211-0/+53
| | | | | | | | | | | | | | | | | | | | | | | | | new functions Description: Added these member functions to class Group per the new C functions H5Gget_num_objs, H5Gget_objname_by_idx and H5Gget_objtype_by_idx: // Returns the number of objects in the group. hsize_t getNumObjs() const; // Retrieves the name of an object in a given group by giving index ssize_t getObjnameByIdx(hsize_t idx, string& name, size_t size) const; // Returns the type of an object in a given group by giving index; // the overloaded function also provided the object type in text as // "group" for H5G_GROUP // "dataset" for H5G_DATASET // "datatype" for H5G_TYPE int getObjTypeByIdx(hsize_t idx) const; int getObjTypeByIdx(hsize_t idx, string& type_name) const; Platforms: SunOS 5.7 (arabica) Linux 6.2 (eirene) IRIX 6.5.11 (modi4)
* [svn-r6236] Purpose: CopyrightBinh-Minh Ribler2003-01-071-0/+14
| | | | | | | | | Description: Added copyright notice to C++ API files, including *.h, *.cpp, and Makefile.in Platforms: Linux 6.2 (eirene)
* [svn-r5030] Binh-Minh Ribler2002-03-011-1/+1
| | | | | | | | | | | | Purpose: Small bug fixing Description: Replaced NULL by 0 for initializing or passing null "string". The problem showed up on platinum. Platforms tested: SunOS 5.7 (arabica) Linux 6.2 (eirene) IA-32 Linux Cluster (platinum)
* [svn-r3602] Binh-Minh Ribler2001-03-101-5/+12
| | | | | | | | | | | | | | | | | | | | | Purpose: Usability enhancement Description: - Added more information about the failure to all the throw's, i.e, member function name and more detail about the failure, where appropriate. Also, added exception throws for private functions, such as p_close to provide more specific details. - Added two api functions: Exception::getFuncName() and Exception::getCFuncName() to provide the name of the member function where failure occurs. - Fixed some typos, one of which caused segn. fault in some situations (resetIdComponent was accidentally called twice in a couple of places :) Platforms: arabica (sparc-sun-solaris 2.7)
* [svn-r3121] Purpose:Binh-Minh Ribler2000-12-131-319/+24
| | | | | | | | | | | | | | | | | Fix and improve Description: - Put functions that are common to H5File and Group into a prototype class, CommonFG. I didn't do that before because of the fear of the consequences of multiple inheritance, since H5File and Group already inherit from different super classes. I recently read a C++ book and learned to use MI more safely. This change reduced some more of code redundancy. - Added missing const to some function parameters - Added missing return statements for some functions. Platforms tested: Solaris/CC 5.0 (arabica)
* [svn-r3080] Binh-Minh Ribler2000-12-071-0/+382
Purpose: Support portability Description: I forgot that source file extension .C will not work on Windows. Solution: Changed all source file from *.C to *.cpp for portability. Platforms tested: arabica (sparc-sun-solaris 2.7)
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