| Commit message (Collapse) | Author | Age | Files | Lines |
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The macro is no longer necessary now that we require C++11.
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Added H5_OVERRIDE macro for compatibility with both C++11 and older.
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* Fixed -Wunused-local-typedef warning
* Fixed -Wformat warnings
In one case also removed a `z` character. There was a `z%d` that I think was supposed to be `%zd`
* Fixed -Wshorten-64-to-32 warnings
* Fixed -Wself-assign warnings
* Fixed -Wreserved-id-macro warnings
* Commit format changes from clang-format, clang version 10.0.1.
* Fixed -Wself-assign warnings
* Fixed -Wunused-local-typedef warning
* Fixed -Wformat warnings
In two cases also removed a `z` character. There was a `z%d` that was supposed to be `%zd`.
* Fixed -Wshorten-64-to-32 warnings
* Fixed -Wreserved-id-macro warnings
* Fixed -Wself-assign warnings
* Format source.
* Remove blank lines to pass format check.
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
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* OESS-98 convert plugin option to FetchContent, add tests
* Fixes for pkcfg files because of plugin option
* OESS-98 fix tools test for plugins
* Keep doxygen comments under 100 chars long - format hint
* Whitespace
* HDFFV-11144 - Reclassify CMake messages
* HDFFV-11099/11100 added help text
* Reworked switch statement to compare string instead
* Fix typo
* Update CDash mode
* Correct name of threadsafe
* Correct option name
* Undo accidental commit
* Note LLVM 10 to 11 format default changes
* Update format plugin
* Undo clang-format version 11 changes
* One more correction
* Update supported platforms
* Revert whitespace changes
* Correct whitespace
* Changes from PR#3
* HDFFV-11213 added option to control gcc10 warnings diagnostics
* HDFFV-11212 Use the new references correctly in JNI utility and tests
* format source
* Fix typo
* Add new test file
* HDFFV-11212 - update test and remove unused arg
* Minor non-space formatting changes
* Use H5I_INVALID_ID instead of "-1"
* source formatting
* add missing testfile, update jni function
* Undo commit of debug code
* remove mislocated file
* Fix h5repack test for handling of fapls and id close
* Update h5diff test files usage text
* HDFFV-11212 add new ref tests for JNI export dataset
* src format update
* Remove blank line typo
* src format typo
* long double requires %Lg
* Another long double foramt specifer S.B. %Lg
* issue with t128bit test
* Windows issue with h5dump and type.
* Fix review issues
* refactor function nesting and fix error checks
* format fixes
* Remove untested functions and javadoc quiet comments
* Restore TRY block.
* Change string append errors to memory exception
* revert to H5_JNI_FATAL_ERROR - support functions need work
* Add assertion error for h5util functions
* remove duplicate function
* format fix
* Revert HD function error handling
* Update copyright comments
* GH #386 java folder copyright corrections
* Whitespace
* GH #359 implement and fix tools 1.6 API usage
* remove excessive comments
* Flip inits to correct ifdef section
* rework ifdef to be simpler
* format issue
* Reformat ifdef inits
* remove static attribute
* format compliance
* Update names
* Revert because logic relies on float not being int
* Changes noticed from creating merge of #412
* Double underscore change
* Correct compiler version variable used
* Remove header guard underscores
* Whitespace cleanup
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* Modify temporary rpath for testing in java example scripts.
* Update URL in source file Copyright headers for web copy of COPYING
file - files not in src or test.
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Description:
- Updated the description of copy constructor for clarification.
- Removed unnecessary comments.
Platforms tested:
Linux/64 (jelly)
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Description:
- Moved the new wrappers committed on Mar 9:
43158f3bb352f374c31556a5d0dc463a09e0b32e
to H5Location and renamed some of them for overloading.
This is because the loc_id in the C APIs can be file, group, dataset,
named datatype, and attribute. Previous implementation was wrong
following some inaccurate C API reference manual.
- Only the following wrappers are modified or added:
+ H5Lcreate_soft: changed name from newLink to link
// Creates a soft link from link_name to target_name.
void link(const char *target_name, const char *link_name,...)
void link(const H5std_string& target_name,...)
+ H5Lcreate_hard: changed name from newLink to link
// Creates a hard link from new_name to curr_name.
void link(const char *curr_name, const Group& new_loc,...)
void link(const H5std_string& curr_name, const Group& new_loc,...)
// Creates a hard link from new_name to curr_name in same location.
void link(const char *curr_name, const hid_t same_loc,...)
void link(const H5std_string& curr_name, const hid_t same_loc,...)
+ H5Ldelete: modified existing functions to add 2nd argument
// Removes the specified link from this location.
void unlink(const char *link_name,
const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)
void unlink(const H5std_string& link_name,
const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)
- copyLink and moveLink were only moved from Group to H5Location, no change
- Added class LinkCreatPropList
- Added overloaded functions H5Location::createGroup to take a link creation
property list
Group createGroup(const char* name, const LinkCreatPropList& lcpl)
Group createGroup(const H5std_string& name, const LinkCreatPropList& lcpl)
- Added wrapper for H5Lget_info() to H5Location
H5L_info_t getLinkInfo(const H5std_string& link_name,...)
Platforms tested:
Linux/64 (jelly)
Linux/ppc64 (ostrich)
Darwin (osx1010test)
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Description:
Added the following wrappers to class H5::Group:
+ H5Lcreate_soft:
// Creates a soft link from link_name to target_name.
void newLink(const char *target_name, const char *link_name,...)
void newLink(const H5std_string& target_name,...)
+ H5Lcreate_hard:
// Creates a hard link from new_name to curr_name.
void newLink(const char *curr_name, const Group& new_loc,...)
void newLink(const H5std_string& curr_name, const Group& new_loc,...)
// Creates a hard link from new_name to curr_name in same location.
void newLink(const char *curr_name, const hid_t same_loc,...)
void newLink(const H5std_string& curr_name, const hid_t same_loc,...)
+ H5Lcopy:
// Copy an object from a group of file to another.
void copyLink(const char *src_name, const Group& dst,...)
void copyLink(const H5std_string& src_name, const Group& dst,...)
// Copy an object from a group of file to the same location.
void copyLink(const char *src_name, const char *dst_name,...)
void copyLink(const H5std_string& src_name,...)
+ H5Lmove:
// Rename an object in a group or file to a new location.
void moveLink(const char* src_name, const Group& dst,...)
void moveLink(const H5std_string& src_name, const Group& dst,...)
// Rename an object in a group or file to the same location.
void moveLink(const char* src_name, const char* dst_name,...)
void moveLink(const H5std_string& src_name,...)
Platforms tested:
Linux/64 (jelly)
Linux/ppc64 (ostrich)
Darwin (osx1010test)
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Description:
- Removed two inadvertently-added Group constructors in the header file.
There was no implementation.
- Removed deprecated H5Location and H5Object constructors that take an
existing ID.
- Miscellaneous improvements in comments, including updating URLs.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (jelly)
Darwin (osx1010test)
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Description:
Moved H5Location::getNumObjs to Group::getNumObjs (i.e., H5Gget_info)
Switched reinterpret_cast to static_cast in H5Object::iterateAttrs
Miscellaneous cleanup
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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Fixed typos and missing items in function headers, that were revealed
by Doxygen, and revised various comments.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Miscellaneous clean-up: format and comments
Platforms tested:
Linux/64 (jelly)
Darwin (osx1010test)
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Description:
Added wrappers for H5Iis_valid, H5Ps/get_nlinks, H5Tget_create_plist,
H5Oopen, H5Oclose and H5Pset_virtual
// Checks if the given ID is valid.
static bool isValid(hid_t an_id);
// Sets the number of soft or user-defined links that can be
// traversed before a failure occurs.
void setNumLinks(size_t nlinks) const;
// Gets the number of soft or user-defined link traversals allowed
size_t getNumLinks() const;
// Returns a copy of the creation property list of a datatype.
PropList getCreatePlist() const;
// Opens an object within a group or a file, i.e., root group.
hid_t getObjId(const char* name,...);
hid_t getObjId(const H5std_string& name,...);
// Closes an object opened by getObjId().
void closeObjId(hid_t obj_id) const;
// Maps elements of a virtual dataset to elements of the source dataset.
void setVirtual(const DataSpace& vspace, const char *src_fname,...);
void setVirtual(const DataSpace& vspace, const H5std_string src_fname,...);
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Only format changes: mostly tabs vs. spaces
Platforms tested:
Linux/64 (jelly) - very minor
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Description:
When adding wrappers for H5Lexists, a new class, LinkAccPropList, was
added to the C++ API, triggered complicated circular dependencies. Thus,
some improvement was made to resolve the problems.
- Replaced existing functions openXxxType with individual type constructors
+ Added individual XxxType constructors to replace the existing functions
openXxxType because it's rather awkward to use these functions.
+ Moved openXxxType from H5Location back to CommonFG
+ Put back CommonFG as a baseclass of Group for openXxxType functions.
+ This replacement should improve usability and prevent the problem of
circular dependencies.
- Removed overloaded constructor that takes an Attribute when there is
already one that takes H5Location because Attribute inherits from
H5Location now.
Platforms tested:
Linux/32 2.6 (jam)
Darwin (osx1010test)
Linux/64 (platypus)
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Removed obsolet macros from C++ API:
H5_NO_NAMESPACE, H5_NO_STD, __cplusplus
Leave OLD_HEADER_FILENAME because iostream.h might still be in use,
until further checking is done.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
Jelly
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Description:
Revised class brief description and other comments for up-to-date info.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
Adding user's test revealed a flaw in the fix.
Moved CommonFG's functions in Group to H5Location, so that they
could be called by objects that can be used to specify a location
Also, rearranged many "#include" header files to resolve conflicts.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
Rearranged the classes to model the relationship of HDF5 objects more
accurately. The changes included:
- moved CommonFG's methods to Group
- removed CommonFG from Group's base class list
- removed CommonFG from H5File's base class list and changed
"public H5Location" to "public Group" in the base class list
- CommonFG became unused
- result of the modified partial class diagram:
IdComponent
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H5Location
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H5Object
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/ / \
DadaType Group DataSet
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H5File
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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- Added a null terminator to the comment returned from the C call, in
getComment methods
- Some minor cleanup
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
Linux/64 2.6 (platypus)/PGI compilers
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- Added a lot of documentation to classes for Reference Manual.
- Fixed some format inconsistencies
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)/PGI compilers
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Description:
Changed header guards from single underscore to double underscore.
Platforms tested:
Linux/32 2.6 (jam) - very minor
Linux/64 2.6 (koala)/PGI compilers
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Description:
- The failure in daily test was caused by missing initialization of member
"id" in a few constructors. This is now fixed.
- Added two overloaded H5Location::setComment
- Improved some error reporting in H5Location
- Improved error reporting in tests
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/64 2.6 (koala)/PGI compilers
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Description:
- Improved the changes in revisions r22836 and r23438, mainly on the
wrappers of reference, dereference, get region, and set/getcomment.
- Added more tests.
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/ppc64 (ostrich)
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Description:
- Completed the changes in revisions r22836 and r23438 with improvement
on wrappers such as reference, dereference, get region, and set/getcomment.
- Added more tests.
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/ppc64 (ostrich)
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Fixed comments, documentation, and mis-matched DOXYGEN_SHOULD_SKIP_THIS pairs.
Platforms tested:
Linux/32 2.6 (jam)
Regenerated and verified generated documentation.
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Description:
Fixed miscellaneous inconsistencies and typos, which also took
care of the failure in Packet Table test on daily test today.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)
Mac Lion (duck)
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Description:
In this bug, H5File doesn't have the ability to create attribute. The
following changes will provide that functionality and several others that
were also missing:
- Added an abstract class H5Location in between IdComponent and H5Object.
- New class structure of IdComponent, H5Location, H5Object, H5File
IdComponent
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H5Location
/ \
H5Object H5File
- Wrappers in H5Object were moved to H5Location because the related C
functions take either file, group, dataset, or named datatype ID.
- Added wrapper for H5Rget_obj_type2
- Added tests for file attributes and H5Rget_obj_type2 wrapper
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)
SunOS 5.10 (linew)
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Added missing wrappers for H5Rdereference.
Also, for these wrappers, improved exception handlings to report specific
overloaded functions, where failure occurs. Will do the same for more
functions later...
Platforms tested:
Linux 2.6 (kagiso)
SunOS 5.10 (linew)
FreeBSD (duty)
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Description:
Changed all subclasses' setId to protected p_setId and put back setId
in IdComponent. p_setId is used in the library where the id provided
by a C API passed on to user's application in the form of a C++ API
object, which will be destroyed properly, and so p_setId does not
call incRefCount. On the other hand, the public version setId is
used by other applications, in which the id passed to setId needs
to be closed properly by the application, so setId must call incRefCount
for the new object to prevent prematurely closing of the id.
Platforms tested:
Linux 2.6 (kagiso)
SunOS 5.10 (linew)
FreeBSD (duty)
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Description:
The class hierarchy was revised to address the problem reported in
bugzilla #1068. Classes AbstractDS and Attribute are moved out of
H5Object. Class Attribute now multiply inherits from IdComponent and
AbstractDs and class DataSet from H5Object and AbstractDs.
In addition, data member IdComponent::id was moved into subclasses:
Attribute, DataSet, DataSpace, DataType, H5File, Group, and PropList.
Platforms tested:
SunOS 5.10 (linew)
Linux 2.6 (kagiso)
FreeBSD (duty)
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Add H5Rget_obj_type() to the API versioning and switch internal
routines to use H5Rget_obj_type2()
Misc. other code cleanups, etc.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
AIX/32 5.3 (copper)
Solaris/32 2.10 (linew)
Mac OS X/32 10.4.10 (amazon)
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copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
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Description:
Wrappers of H5Rcreate had incorrect prototypes.
Solution:
Added these overloaded functions for H5Rcreate wrapper to IdComponent:
void reference(void* ref, const char* name, DataSpace& dataspace,
H5R_type_t ref_type = H5R_DATASET_REGION) const;
void reference(void* ref, const char* name) const;
void reference(void* ref, const H5std_string& name) const;
Added these overloaded functions for H5Rdereference:
void dereference(IdComponent& obj, void* ref);
DataSet(IdComponent& obj, void* ref);
Group(IdComponent& obj, void* ref);
DataType(IdComponent& obj, void* ref);
The incorrect wrappers will be removed after announcing.
Platform tested:
Linux 2.4 (heping)
AIX 5.1 (copper)
SunOS 5.8 64-bit (sol)
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Description:
Fixed typos and re-arranged some functions to be in sync with 1.6.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.9 (shanti)
AIX 5.1 (copper)
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Description:
Changed to alias string instead of std, i.e. H5std_string instead
of H5std, because the old way wasn't working when std didn't exist.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
HPUX 11.00 (kelgia) - this was the problematic platform but I wasn't
able to test before.
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Description:
Added alias H5_std so either the global or std namespace can be
used, depending on H5_NO_STD.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
AIX 5.1 (copper)
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Description:
There was a workaround for predefined types, in the C++ library,
implemented when the C++ library was handling the reference
counting of the object ids on its own. Currently, the C++ library
is using the available APIs from the C library for that purpose,
and there were bugs reported involving that part of the C++ library.
So, I decided to remove the workaround completely.
Also, improved the use of std members.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
Linux 2.4 w/PGI (colonelk)
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Code cleanup
Description:
Tweak copyright on C++ source files to reduce whining by copyright checking
script.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/C++
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Description:
Added wrapper for H5Iget_type.
Added try/catch to many APIs that call private functions so that more
specific information can be provided at failure.
Added IdComponent::inMemFunc to help providing specific info.
Added const to parameters of several functions that missed that.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
AIX 5.1 (copper)
IRIX64 with -n32 (modi4)
HPUX 11.00 (kelgia)
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Description:
Added the following to the C++ library
+ overloaded functions:
string CommonFG::getObjnameByIdx(hsize_t idx)
H5T_order_t AtomType::getOrder()
+ wrappers for H5*close
+ wrappers for H5Arename, H5Aget_storage_size, and H5Dget_storage_size
Platforms tested:
Linux 2.4 (heping)
AIX 5.1 (copper)
SunOS 5.8 64-bit (sol)
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Description:
Updated various function headers for the RM as reviewing progresses.
Rearranged functions in header files for more sensible look of the RM.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
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Code cleanup
Description:
DataType::commit had incorrect parameter, H5Object. Changed
it to CommonFG, for H5File and Group.
The change caused additional header files needed for several
other cpp files.
Moved some functions from Group into the base class CommonFG for
H5File too.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
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Code update
Description:
Update C++ wrappers to use new ID reference counting mechanisms.
Platforms tested:
FreeBSD 4.9 (sleipnir) w/C++
Too focused to require h5committest
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Add C++ wrappers - incrementally check-in
Description
Added wrapper for these C APIs:
H5Rcreate
H5Rget_obj_type
H5Rget_region
This is an incremental check-in to preserve the code, corresponding
tests will follow in a few weeks.
Platforms:
Linux 2.4 (eirene)
I'm checking the code out and test on arabica too.
Misc. update:
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Cleaning up warnings
Description:
Many exception constructors have warnings about reference to temporary
location because of the parameter initialization, for example,
"const string& var = 0."
Solution:
Changed "string&" parameters to pass by value for these constructors.
Consequently, passing string by value also takes care of char pointers
so the overloaded constructors for char pointers are then removed.
Also, instead of setting Exception::detailMessage to null string, I
set it to DEFAULT_MSG ("No detailed information provided") by default.
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
IA-64 (titan)
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