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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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Fixed typos and missing items in function headers, that were revealed
by Doxygen, and revised various comments.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Miscellaneous clean-up: format and comments
Platforms tested:
Linux/64 (jelly)
Darwin (osx1010test)
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Only format changes: mostly tabs vs. spaces
Platforms tested:
Linux/64 (jelly) - very minor
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Description:
Added wrappers H5Location::exists() for H5Lexists.
Added wrapper H5Object::objVersion() to return the header version
of an HDF5 object.
Added new class LinkAccPropList to be used by H5Location::exists()
Added new exception: ObjHeaderIException for H5Object::objVersion()
Rearranged source files in Makefile.am
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
When adding wrappers for H5Lexists, a new class, LinkAccPropList, was
added to the C++ API, triggered complicated circular dependencies. Thus,
some improvement was made to resolve the problems.
- Replaced existing functions openXxxType with individual type constructors
+ Added individual XxxType constructors to replace the existing functions
openXxxType because it's rather awkward to use these functions.
+ Moved openXxxType from H5Location back to CommonFG
+ Put back CommonFG as a baseclass of Group for openXxxType functions.
+ This replacement should improve usability and prevent the problem of
circular dependencies.
- Removed overloaded constructor that takes an Attribute when there is
already one that takes H5Location because Attribute inherits from
H5Location now.
Platforms tested:
Linux/32 2.6 (jam)
Darwin (osx1010test)
Linux/64 (platypus)
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Removed obsolet macros from C++ API:
H5_NO_NAMESPACE, H5_NO_STD, __cplusplus
Leave OLD_HEADER_FILENAME because iostream.h might still be in use,
until further checking is done.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
Jelly
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Fixed typo that caused daily test failed when --enable-deprecated-symbols
is used. Also, removed a commented-out function.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus) with --enable-deprecated-symbols
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Description:
Revised class brief description and other comments for up-to-date info.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
Adding user's test revealed a flaw in the fix.
Moved CommonFG's functions in Group to H5Location, so that they
could be called by objects that can be used to specify a location
Also, rearranged many "#include" header files to resolve conflicts.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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trunk:
Description:
Continued rearranging the classes to model the relationship of HDF5
objects more accurately. The changes included:
- in the baseclass list of Attribute, changed "public IdComponent" to
"public H5Location", because location sometime can be specified with
attribute
- moved H5A wrappers in H5Location to H5Object because H5A functions
can't be called on attribute id
- removed the stubs Attribute::iterateAttrs and Attribute::renameAttr
- removed Attribute::getFileName and Attribute::flush, because
H5Location has them
- result of the modified partial class diagram, regarding Attribute
IdComponent
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H5Location AbstractDs
/ \ /
H5Object Attribute
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
- Implemented the friend function
void f_PropList_setId(PropList* plist, hid_t new_id)
to work around the same problem described in trunk r26655, for the
API DataSet::getCreatePlist()
- Cleaned up some comments and obsolete functions
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
When copy constructor or constructor that takes an existing id is invoked,
the C ref counter stays the same but there is an extra C++ object which
later is destroyed and may cause the HDF5 id to be closed prematurely. The
C++ library needs to increment the ref counter in these situations, so that
the C library will not close the id when it is still being referenced.
However, the incrementing of ref count left some objects opened at the end
of the program, perhaps, due to compiler's optimization on cons/destructors. The constructor, that takes an existing id, needs to increment the counter
but it seems that the matching destructor wasn't invoked. The workaround
is to have a function for each class that has "id" that only sets the id
and not increment the ref count for the library to use in these situations.
These functions are "friend" and not public.
The friend functions are:
void f_Attribute_setId(Attribute *, hid_t)
void f_DataSet_setId(DataSet *, hid_t)
void f_DataSpace_setId(DataSpace *, hid_t)
void f_DataType_setId(DataType *, hid_t)
Platforms tested:
Linux/64 (platypus)
Linux/32 2.6 (jam gnu and Intel 15.0)
SunOS 5.11 (emu)
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Fixed typo that caused failure on Windows.
Platforms tested:
Linux/32 2.6 (jam)
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Description:
The following two constructors of classes: AbstractDs, IdComponent,
H5Location, and H5Object are no longer appropriate after the data member
"id" had been moved from IdComponent to the sub-classes.
The copy constructors are noop and will be generated by the compilers if
needed so they can be removed in 1.8.15 without effecting applications. The
other constructors will be removed from 1.10 release, and then from 1.8 if
their removal does not raise any problems in at least two 1.10 releases.
<Classname>(const hid_t h5_id);
<Classname>(const <Classname>& original);
Deprecation warnings are added to each of these classes.
The other classes are changed to call the default constructor instead of
one of the constructors above.
Platforms tested:
Linux/64 (platypus)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
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Description:
Turned on warnings and removed some of those.
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
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Fixed mismatched function prototype/definition that caused daily
test failure on emu/production/HDF5TestExpress=1.
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
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- Added another overload for char* argument:
ssize_t getComment(const char* name, const size_t buf_size, char* comment)
- Changed default value to 0 for the other two getComment methods
- Added HDmemset to after every char string allocation to clear the buffer
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
Linux/64 2.6 (platypus)/PGI compilers
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- Added a lot of documentation to classes for Reference Manual.
- Fixed some format inconsistencies
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)/PGI compilers
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Description:
Changed header guards from single underscore to double underscore.
Platforms tested:
Linux/32 2.6 (jam) - very minor
Linux/64 2.6 (koala)/PGI compilers
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Description:
- The failure in daily test was caused by missing initialization of member
"id" in a few constructors. This is now fixed.
- Added two overloaded H5Location::setComment
- Improved some error reporting in H5Location
- Improved error reporting in tests
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/64 2.6 (koala)/PGI compilers
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Description:
- Improved the changes in revisions r22836 and r23438, mainly on the
wrappers of reference, dereference, get region, and set/getcomment.
- Added more tests.
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/ppc64 (ostrich)
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Description:
- Completed the changes in revisions r22836 and r23438 with improvement
on wrappers such as reference, dereference, get region, and set/getcomment.
- Added more tests.
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Linux/ppc64 (ostrich)
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Fixed comments, documentation, and mis-matched DOXYGEN_SHOULD_SKIP_THIS pairs.
Platforms tested:
Linux/32 2.6 (jam)
Regenerated and verified generated documentation.
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Description:
Added wrappers for H5Aexists.
Platforms Tested:
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)
Linux/ppc64 (ostrich)
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Description:
In this bug, H5File doesn't have the ability to create attribute. The
following changes will provide that functionality and several others that
were also missing:
- Added an abstract class H5Location in between IdComponent and H5Object.
- New class structure of IdComponent, H5Location, H5Object, H5File
IdComponent
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H5Location
/ \
H5Object H5File
- Wrappers in H5Object were moved to H5Location because the related C
functions take either file, group, dataset, or named datatype ID.
- Added wrapper for H5Rget_obj_type2
- Added tests for file attributes and H5Rget_obj_type2 wrapper
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 2.6 (koala)
SunOS 5.10 (linew)
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