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* [svn-r13314] Updated copyright notice.Albert Cheng2007-02-141-2/+3
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* [svn-r13311] Updated copyright notice.Albert Cheng2007-02-142-15/+17
| | | | | Test: Just visual inspection as these are all comments changes.
* [svn-r13264] Updated Makefile.am with new THG copyright notice.Albert Cheng2007-02-072-4/+6
| | | | Ran reconfigure to generate the Makefile.in files.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-0757-114/+171
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13211] Purpose: Adding wrappersBinh-Minh Ribler2007-01-292-5/+35
| | | | | | | | | | Description: Added wrapper DSetCreatPropList::setSzip. Platforms tested AIX 5.1 (copper) SunOS 5.8 64-bit (sol) Linux 2.6 (kagiso)
* [svn-r13200] Purpose: Adding wrappers and fixing a bugBinh-Minh Ribler2007-01-266-24/+115
| | | | | | | | | | | | | | Description: - Added overloaded function DataType::copy to take a DataSet - Added overloaded DataType::commit - Fixed bugzilla 797 - Fixed a warning in DataSpace::operator= - Set PropList parameter to default in DataType::convert Platforms tested AIX 5.1 (copper) SunOS 5.8 64-bit (sol) HPUX 11.00 (kelgia)
* [svn-r13181] Added a configure check to prevent a failure on Cygwin.James Laird2007-01-231-1/+1
| | | | | | | | | | | | | | It seems that while Cygwin supports the time command, it has trouble with the syntax srcdir="../../hdf5/test" time ./testhdf5 and complains. The solution is to test the above case in configure and not to use the time command if it fails; Cygwin is fine with srcdir="../../hdf5/test" ./testhdf5 Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility problem since every platform but Cygwin is already fine with the current syntax.
* [svn-r13092] Purpose: MaintenanceBinh-Minh Ribler2007-01-024-7/+38
| | | | | | | | | | | Description: Added overloaded method DataSet::vlenReclaim, that has better prototype. Fixed some typos. Platforms tested AIX 5.1 (copper) SunOS 5.8 64-bit (sol) Linux 2.6 (kagiso)
* [svn-r13038] Purpose: Fixed user reported bugBinh-Minh Ribler2006-12-112-6/+12
| | | | | | | | | | | | | | | Description: In Attribute::read, H5Aread malloc's memory for the read data buffer, so Attribute::read shouldn't allocate the buffer, but needs to deallocate with HDfree. Fixed a typo in H5StrType.cpp, should pass PredType::C_S1 to "copy" instead of H5T_C_S1. Platforms tested: AIX 5.1 (copper) Linux 2.6 (kagiso) SunOS 5.8 64-bit (sol)
* [svn-r12929] Hopefully this really is a fix for the tg-login errors.James Laird2006-11-161-3/+1
| | | | | | | | | | | The version of libtool used by HDF5 isn't directly affected by the reconfigure script; instead, libtoolize --force must be used by hand. Libtool was the source of the problem, so rolling its version back to 1.5.14 should solve the issue (at least temporarily). Reconfigure should still work on both heping and kagiso. Tested on heping, kagiso, and tg-login3.
* [svn-r12911] Backed up to previous versions of automake and libtool. ↵James Laird2006-11-141-1/+3
| | | | | | | | Hopefully this will fix issues on tg-login3. bin/reconfigure should still work on both heping/mir and kagiso.
* [svn-r12887] A fix for linking issues.James Laird2006-11-101-0/+1
| | | | | | | | | | | | Should disable linking against shared libraries in Fortran for compilers that don't support shared libraries. Should also fix problem when the wrong Fortran file extension was specified. If these changes don't solve the Daily Test issues, I'll look at backing out the autotool version change until I have time to fix them. Tested on heping, kagiso, juniper.
* [svn-r12882] Changed bin/reconfigure to work on kagiso as well as on AFS ↵James Laird2006-11-081-7/+9
| | | | | | | | Linux machines. Updated to the latest versions of autotools. Tested on kagiso, heping, and juniper. Let me know if you have any problems.
* [svn-r12842] Description:Quincey Koziol2006-11-021-5/+5
| | | | | | | | | | | | | | | | Refactor generic property list initialization code to put property list specific routines in property list modules, instead of scattered to the four winds. Also, introduce property list class initialization objects, to make adding new property list classes in the library easier. Fix daily test failure by using H5Pget_elink_prefix() API routine instead of looking at the "raw" generic property list information. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & 1.6 compat
* [svn-r12840] Frank Baker2006-11-011-1/+1
| | | | | | | | | | | Description: Correct input file that, via doxygen, creates the C++ reference manual paragraph that pointed to a now-removed release_docs/ file. Original file was release_docs/INSTALL_Windows_withcpp.txt; current file is release_docs/INSTALL_Windows.txt. Closes Bugzilla entry 719. Tested: Trivial change; not tested.
* [svn-r12799] Purpose: Fixed typoBinh-Minh Ribler2006-10-221-3/+0
| | | | | | | | Description: Removed a leftover prototype. Platform tested: Linux 2.6 (kagiso) - very minor
* [svn-r12795] Purpose: Fixing bugBinh-Minh Ribler2006-10-2213-142/+281
| | | | | | | | | | | | | | | | | | | | | | | | | Description: Wrappers of H5Rcreate had incorrect prototypes. Solution: Added these overloaded functions for H5Rcreate wrapper to IdComponent: void reference(void* ref, const char* name, DataSpace& dataspace, H5R_type_t ref_type = H5R_DATASET_REGION) const; void reference(void* ref, const char* name) const; void reference(void* ref, const H5std_string& name) const; Added these overloaded functions for H5Rdereference: void dereference(IdComponent& obj, void* ref); DataSet(IdComponent& obj, void* ref); Group(IdComponent& obj, void* ref); DataType(IdComponent& obj, void* ref); The incorrect wrappers will be removed after announcing. Platform tested: Linux 2.4 (heping) AIX 5.1 (copper) SunOS 5.8 64-bit (sol)
* [svn-r12741] Added support for direct I/O to check-vfd. The direct VFD is ↵James Laird2006-10-101-2/+2
| | | | | | | | | | only tested if it is enabled. Added Direct VFD status to the configure summary. Removed a line left over from pablo support. Oops!
* [svn-r12715] Incorporated a user-submitted patch to better detect the 'tr' ↵James Laird2006-10-031-0/+1
| | | | | | | | | | | | utility and quote its arguments. Also checks for the 'socket' library on Solaris. If this patch passes the Daily Tests and makes the user happy, I'll port it back to the 1.6 branch. Tested on mir and sol.
* [svn-r12608] Checked in External Link C examples.James Laird2006-08-221-1/+1
| | | | | | | | Since these examples need to follow filesystem paths, the Makefiles need to create directories in the examples directory; added this to the Makefile.am. Tested on Windows, mir, juniper
* [svn-r12584] Mentioned VFD in test output to make it easier to tell which ↵James Laird2006-08-171-7/+6
| | | | | | | | | VFD is being used when a test is run. Running reconfigure also regenerated error header files (because someone edited them manually?).
* [svn-r12519] Fixed "make check-vfd"James Laird2006-07-311-2/+3
| | | | | | | | | | "make check-vfd" will now run all tests in the test directory with different file drivers (at least, all of those tests that use the testing framework's FAPL). Tests that fail will be skipped. This is not a perfect fix, but is better than nothing. Along with this change, check-vfd should be added to the Daily Tests.
* [svn-r12452] Purpose:James Laird2006-07-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | Feature Description: Revised Link APIs. Solution: New link APIs use H5L* H5*create_expand do not create links to the objects created; this must be done manually with H5Llink. Added APIs to link an object given its ID (H5Llink), to copy links (H5Lcopy), and changed creation APIs (H5Lcreate_hard and H5Lcreate_soft) and query API (H5Lget_linkinfo instead of H5Gget_objinfo). All old APIs are still supported in H5Gdeprec.c . Platforms tested: sol, mir, copper Misc. update: Forgot to update MANIFEST and release docs. Will do after checkin.
* [svn-r12440] Purpose:Quincey Koziol2006-06-274-9/+9
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r12431] Purpose:James Laird2006-06-212-18/+9
| | | | | | | | | | | | | | Configuration feature Description: 'make install' now tests both static and shared libraries if both are installed. Solution: Previously, shared libraries were only tested when static libraries were not installed. Also cleaned up line in commence.am that was including HL library in all Makefiles. Platforms tested: mir (Makefile change only)
* [svn-r12411] Purpose:James Laird2006-06-131-0/+1
| | | | | | | | | | | | | | Bug fix - bugzilla #552 Description: On Cray X1, trying to use : as an argument confused the system. Solution: Added a test in configure to see if : as an argument is bad. If so, skipped the test. Platforms tested: mir, Cray X1 (change to configure only)
* [svn-r12404] Purpose: Fix typos/formatsBinh-Minh Ribler2006-06-0538-309/+377
| | | | | | | | | | Description: Fixed typos and re-arranged some functions to be in sync with 1.6. Platforms tested: Linux 2.4 (heping) SunOS 5.9 (shanti) AIX 5.1 (copper)
* [svn-r12368] Purpose: Fixed bugBinh-Minh Ribler2006-05-2310-163/+166
| | | | | | | | | | | | | | | | | Description: Shanti compiler destroy unnamed objects later than others, which caused some reference counting test fail. Revised the test so that destructors are called at the same time, regardless the differences of compiler implementation. Revised some constructors, close, operator=, and destructors to make sure that all the object ids are handled properly. Platforms tested: Linux 2.4 (heping) SunOS 5.9 (shanti) HPUX 11.00 (kelgia) AIX 5.1 (copper)
* [svn-r12358] Purpose:Albert Cheng2006-05-191-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: The ${TR}, though avoid the error, is inconvenient. It is needed because configure.in use the char range in the style of 'a-z'. The other style of '[a-z]' is more commonly accepted by all tr but autoconf tends to strip away [], making the syntax rather clumsy. Solution: Learned from autoconf that it avoids the use of character range by just spell all the letters out. Changed our tr commands to use those variables defined by autoconf. Also removed the definition of ${TR} since it will cause inconsistancy when autoconf also use plain 'tr' in its generated code. The Makefile.in are changed because the elimination of ${TR} from configure triggered its removal from all Makefil.in. That is okay because ${TR} is not used at all in Makefile. Platforms tested: h5committested. (sol failed to connected). also tested in shanti using both /usr/ucb/tr and /bin/tr (the bad one before.) Misc. update: Updated both INSTALL and RELEASE files.
* [svn-r12345] Purpose: Codes for backward compatibility.Raymond Lu2006-05-122-4/+4
| | | | | | | | | | Description: Function prototype H5E_walk_t and structure H5E_error_t wasn't backward compatible. Solution: Make them compatible with v1.6 and provide new definitions of H5E_walk_stack_t and H5E_error_stack_t. Platforms tested: fuss and h5committest.
* [svn-r12295] Purpose:James Laird2006-04-211-3/+3
| | | | | | | | | | | | | | | | | | | Several bug fixes Description: Added config file for Cray X1 (previous file was misnamed) Simplified some code in hyperslab.c test that seemed to have been confusing compiler on Cray X1. Fixed typo in config/commence.am Cleaned up hl/src/Makefile.am Solution: All four fixes should be straightforward. The failure on Cray was very difficult to debug, but involved arithmetic errors. This change seems to fix it. Platforms tested: heping, copper, sol, some Cray X1 (more testing when system comes back up)
* [svn-r12256] Purpose: Bug fixElena Pourmal2006-04-151-5/+1
| | | | | | | | | | | | | | Description: "using std::count" statement caused the problems on copper and kelgia Solution: I believe this statement is not needed at all (will verify with more daily tests and Binh-Minh). Removed. Platforms tested: heping, mir with Intel compiler, copper with -q64, shanti (there is a known failure in tatrr test) Misc. update:
* [svn-r12253] Purpose: MaintenanceElena Pourmal2006-04-141-2/+2
| | | | | | | | | | | | | Description: Brought VMS changes back. My previous note about using std::count; should be in this log. C++ on VMS doesn't support "using std::count" Solution: IFDEF'ed with H5_VMS (until Binh-Minh has a chance to look into it and propose a different solution) Platforms tested: VMS server, heping Misc. update:
* [svn-r12229] Purpose:Pedro Vicente Nunes2006-04-122-4/+6
| | | | | | | | | | | | | | | | | | | | | new feature Description: 1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library 2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in) 3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h Solution: Platforms tested: linux 32, 64 AIX solaris with fortran and c++ (one packet table example fails) Misc. update:
* [svn-r12216] Purpose:Quincey Koziol2006-04-102-0/+32
| | | | | | | | | | | | | | | | | Code cleanup Description: Clean up some runtime errors from unsupported C99 types on Solaris 2.9 by wrapping them with ifdef's. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 32-bit (heping) Linux 2.4 64-bit (mir) Solaris 2.9 (shanti) Misc. update:
* [svn-r12200] Purpose: MaintenanceBinh-Minh Ribler2006-04-0540-251/+251
| | | | | | | | | | | | Description: Changed to alias string instead of std, i.e. H5std_string instead of H5std, because the old way wasn't working when std didn't exist. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) HPUX 11.00 (kelgia) - this was the problematic platform but I wasn't able to test before.
* [svn-r12192] Purpose: MaintenanceBinh-Minh Ribler2006-04-021-1/+1
| | | | | | | | | | Description: Corrected syntax for aliasing H5_std in the case of no std. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) Still couldn't test on kelgia; I'll check daily test tomorrow.
* [svn-r12185] Purpose: Code cleanupBinh-Minh Ribler2006-03-3125-55/+0
| | | | | | | | Description: Removed an empty #ifdef block that was left by mistake. Platforms tested: Linux 2.4 (heping) - very minor
* [svn-r12180] Purpose: MaintenanceBinh-Minh Ribler2006-03-3050-333/+254
| | | | | | | | | | | Description: Added alias H5_std so either the global or std namespace can be used, depending on H5_NO_STD. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) AIX 5.1 (copper)
* [svn-r12149] Purpose:James Laird2006-03-231-7/+1
| | | | | | | | | | | | | | | | Bug fix Description: Previous checkin did a bad thing; 'make clean' failed in example directories. Solution: Fixed commence.am so that examples no longer break, and fixed a mistake in conclude.am. Platforms tested: heping (minor makefile change) Misc. update:
* [svn-r12143] Purpose:James Laird2006-03-231-0/+4
| | | | | | | | | | | | | | Bug fix Description: make check-clean didn't clean results of example tests Solution: Fixed Makefiles so that check-clean recurses into example directories. Also a little Makefile cleanup. Platforms tested: mir, modi4, heping, copper
* [svn-r12074] Purpose: Typo fixElena Pourmal2006-03-101-1/+1
| | | | | | | | | | | Description: There was no macro name in ifdef statement (it was commented out ;-)) Solution: Fixed the typo Platforms tested: tested on heping with g++ Misc. update:
* [svn-r12052] Purpose: VMS portElena Pourmal2006-03-091-3/+12
| | | | | | | | | | | Description: insert method didn't work for VMS. Solution: Used append methos to form the string; this may become the change for all platforms after more testing Platforms tested: heping, VMS server Misc. update:
* [svn-r11937] Purpose:Albert Cheng2006-02-151-1/+1
| | | | | | | | | | | | | New feature. Description: Added the feature to make a release tarball for the documents tree too. Platforms tested: Feature code was created by James. I just did some touch up and tested it by hand in heping. I am checking it in while he is absent. Misc. update:
* [svn-r11845] Purpose: Adding another wrapper/Fixing typosBinh-Minh Ribler2005-12-293-3/+25
| | | | | | | | | | | Description: Added missing member function H5File::flush Fixed parameters passed to H5Awrite Other typos Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol)
* [svn-r11762] Purpose: Adding more wrappersBinh-Minh Ribler2005-12-057-15/+112
| | | | | | | | | | | | | | | | | Description: Added member function H5File::openFile and overloaded for convenience. Added overloaded getObjinfo to skip the middle parameter. Changed StrType(const size_t& size); to StrType(const int dummy, const size_t& size); because the first one clashed with StrType(const hid_t existing_id); Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) HPUX 11.00 (kelgia)
* [svn-r11755] Purpose: Code improvementBinh-Minh Ribler2005-12-0345-574/+369
| | | | | | | | | | | | | | | | | Description: There was a workaround for predefined types, in the C++ library, implemented when the C++ library was handling the reference counting of the object ids on its own. Currently, the C++ library is using the available APIs from the C library for that purpose, and there were bugs reported involving that part of the C++ library. So, I decided to remove the workaround completely. Also, improved the use of std members. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) Linux 2.4 w/PGI (colonelk)
* [svn-r11741] Purpose:James Laird2005-11-181-6/+16
| | | | | | | | | | | | | | | | | Bug fix Description: Fortran type generation was broken in two ways. Fixed both. Solution: Firstly, there were a couple of path problems. Fixed a typo and specified the full path of a file. Secondly, the dependencies weren't right when building with HDF5-specific commands (make lib, make check-s, etc.). Tweaked dependencies to fix the problem. Platforms tested: mir, modi4, sleipnir
* [svn-r11738] Purpose:James Laird2005-11-181-0/+4
| | | | | | | | | | | | | | | | | | | Configure feature Description: Added 'make trace' target. Solution: Added tracing to 1.7. This was done automatically in 1.6, but left out of 1.7 until now (oops!). Tracing in 1.7 only happens manually, when the user types 'make trace.' Tracing automatically requires more framework than it's worth. I also fixed a couple of tracing bugs and ran trace. Platforms tested: mir, sleipnir, modi4 Misc. update:
* [svn-r11737] Purpose:James Laird2005-11-171-0/+8
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix Description: Before this checkin, 'gmake check-s' would fail if there was a file in the current directory named 'check-s'. This is fixed under gmake (not sure how to fix for other makes). Solution: check, progs, install, etc. are what gmake calls "phony" targets, which means that no file should be created. These targets can be specified by a line of the form .PHONY: check progs install ... Automake adds this line for targets it knows about, but HDF5 has a lot of custom rules. This checkin adds a .PHONY line for those rules. I believe that only gmake recognizes the .PHONY line (at least, pmake doesn't seem to), but a partial solution is better than none. This error should occur very rarely anyway (the user has to manually create files with names like 'build-check-s' or '_test'). Platforms tested: mir, sleipnir, modi4
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