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* Strip HD prefix from string/char C API calls (#3540)Dana Robinson2023-09-151-1/+1
| | | | | | | | | | | | | | | | | | | | | * Strip HD prefix from string/char C API calls * HD(f)(put|get)(s|c) * HDstr* * HDv*printf * HD(s)(print|scan)f * HDperror But NOT: * HDstrcase* * HDvasprintf * HDstrtok_r * HDstrndup As those are not C99 and have portability work-around implementations. They will be handled later. * Fix th5_system.c screwup
* Remove HD from HDmem* calls (#3211)Dana Robinson2023-06-291-6/+6
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* Remove programmer/date from comments (#3210)Dana Robinson2023-06-291-15/+0
| | | | * Removes Programmer: and Date: fields * Fixes a few Modifications: fields leftover from previous work
* Update copyright headers (#2184)Larry Knox2022-11-011-1/+0
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Develop cmake clean (#1971)Allen Byrne2022-08-071-0/+3
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* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-071-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* C++ warning and build fixes (#707)Dana Robinson2021-06-011-15/+23
| | | | | | | | | | | | * Committing clang-format changes * C++ build and warning updates * Fixes all warnings on C++ (with gcc 9.3) * Updates CMake and Autotools C++ builds * Undo warning clobber Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Removed checks/workarounds for pre-C++89 compatibility (#449)Sean McBride2021-03-101-4/+0
| | | | | | | | After 30+ years, just assume that the following exist: - extension-less includes - namespaces - std:: - static_cast - bool
* Update license url part2 (#333)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Clang-format of source filesAllen Byrne2020-09-301-97/+89
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* TRILAB-244 separate CXX warnings and errors from CAllen Byrne2020-04-231-2/+2
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-161-1/+1
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* Added new C++ wrappers - HDFFV-10622Binh-Minh Ribler2019-04-221-6/+118
| | | | | | | | | | | | | | | | Description: Added wrappers for H5Pset/get_create_intermediate_group: // Specifies in property list whether to create missing // intermediate groups void setCreateIntermediateGroup(bool crt_intmd_group) const; // Determines whether property is set to enable creating missing // intermediate groups bool getCreateIntermediateGroup() const; Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
* Fixed HDFFV-10210 and HDFFV-10587Binh-Minh Ribler2019-03-201-2/+2
| | | | | | | | | | | Description: - Added parameter validation (HDFFV-10210) - Added detection of division by zero (HDFFV-10587 - CVE-2018-17438) - Fixed typos in various tests Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
* Code improvementBinh-Minh Ribler2018-07-211-9/+9
| | | | | | | | | | | Description: Moved the new H5Object::getInfo member functions to H5Location and made them overloaded with the existing H5Location::getObjinfo. This way is cleaner than the previous approach. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* Fixed HDFFV-10458 partiallyBinh-Minh Ribler2018-07-171-5/+93
| | | | | | | | | | | | | | | | | | | | Description: Added wrappers for H5Oget_info2 and H5Oget_info_by_name2. // Returns information about an HDF5 object. void getInfo(H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC) // Returns information about an HDF5 object, given its name. void getInfo(const char* name, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) void getInfo(const H5std_string& name, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* Various code cleanupBinh-Minh Ribler2017-12-041-26/+31
| | | | | | | | | | | Description: - Replaced H5Location::exists with H5Location::nameExists and marked H5Location::exists as deprecated. - Miscellaneous test cleanup for consistency. Platforms tested: Linux/32 2.6 (jam) Linux/64 (jelly) Darwin (osx1010test)
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Purpose: Add new C++ wrappersBinh-Minh Ribler2017-03-141-0/+121
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added wrappers for H5Iis_valid, H5Ps/get_nlinks, H5Tget_create_plist, H5Oopen, H5Oclose and H5Pset_virtual // Checks if the given ID is valid. static bool isValid(hid_t an_id); // Sets the number of soft or user-defined links that can be // traversed before a failure occurs. void setNumLinks(size_t nlinks) const; // Gets the number of soft or user-defined link traversals allowed size_t getNumLinks() const; // Returns a copy of the creation property list of a datatype. PropList getCreatePlist() const; // Opens an object within a group or a file, i.e., root group. hid_t getObjId(const char* name,...); hid_t getObjId(const H5std_string& name,...); // Closes an object opened by getObjId(). void closeObjId(hid_t obj_id) const; // Maps elements of a virtual dataset to elements of the source dataset. void setVirtual(const DataSpace& vspace, const char *src_fname,...); void setVirtual(const DataSpace& vspace, const H5std_string src_fname,...); Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* Description:Binh-Minh Ribler2017-03-031-250/+250
| | | | | | Only format changes: mostly tabs vs. spaces Platforms tested: Linux/64 (jelly) - very minor
* Purpose: Add more testsBinh-Minh Ribler2017-01-031-6/+21
| | | | | | | | | Description: Added more tests for the new constructors that replaced openXxxType() Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* Purpose: Add new wrappersBinh-Minh Ribler2016-12-281-22/+93
| | | | | | | | | | | | | | Description: Added wrappers H5Location::exists() for H5Lexists. Added wrapper H5Object::objVersion() to return the header version of an HDF5 object. Added new class LinkAccPropList to be used by H5Location::exists() Added new exception: ObjHeaderIException for H5Object::objVersion() Rearranged source files in Makefile.am Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* Purpose: Improvement for HDFFV-10004Binh-Minh Ribler2016-12-191-3/+18
| | | | | | | | | | | | | | | | | | | | | Description: When adding wrappers for H5Lexists, a new class, LinkAccPropList, was added to the C++ API, triggered complicated circular dependencies. Thus, some improvement was made to resolve the problems. - Replaced existing functions openXxxType with individual type constructors + Added individual XxxType constructors to replace the existing functions openXxxType because it's rather awkward to use these functions. + Moved openXxxType from H5Location back to CommonFG + Put back CommonFG as a baseclass of Group for openXxxType functions. + This replacement should improve usability and prevent the problem of circular dependencies. - Removed overloaded constructor that takes an Attribute when there is already one that takes H5Location because Attribute inherits from H5Location now. Platforms tested: Linux/32 2.6 (jam) Darwin (osx1010test) Linux/64 (platypus)
* Description:Binh-Minh Ribler2016-10-191-17/+5
| | | | | | | | | | | | Removed obsolet macros from C++ API: H5_NO_NAMESPACE, H5_NO_STD, __cplusplus Leave OLD_HEADER_FILENAME because iostream.h might still be in use, until further checking is done. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test) Jelly
* [svn-r29759] Purpose: Code improvementsBinh-Minh Ribler2016-04-221-3/+3
| | | | | | | | | | | | Description: - Changed object in catch statements to reference - Replaced old-style casts or reinterpret_cast with static_cast - Removed unused name H5Library::need_cleanup - Removed Exception::printError from documentation Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r26640] Purpose: Fix bugsBinh-Minh Ribler2015-03-281-4/+22
| | | | | | | | | | | | | | | | | Description: - Changed DataType::operator= to simply copy the id of rhs instead of calling H5Tcopy because, when the operator= is invoked, a different datatype id is created and it won't have the same characteristics as rhs', specifically, if the rhs represents a named datatype, "this" would still be a transient datatype. - Added a DataType constructor that takes a PredType object, and this constructor will cause H5Tcopy to generate another datatype id, from a predefined datatype. - Fixed various mistakes in tests. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam/gnu and jam/icc 15) SunOS 5.11 (emu development/production)
* [svn-r26458] Purpose: Fix warnings HDFFV-8658Binh-Minh Ribler2015-03-151-1/+3
| | | | | | | | | Description: Fixed many type conversion warnings and unused variables. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r24983] Purpose: Fix HDFFV-8367Binh-Minh Ribler2014-04-071-0/+66
| | | | | | | | | | | | | | Description: - Added wrappers to CommomFG for H5Oget_info_by_name() to get a child object's type (requested by user) H5O_type_t childObjType(const H5std_string& objname) const; H5O_type_t childObjType(const char* objname) const; H5O_type_t childObjType(hsize_t index, H5_index_t index_type=H5_INDEX_NAME, H5_iter_order_t order=H5_ITER_INC, const char* objname=".") const; - Added tests to tobject.cpp Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r24969] Description:Binh-Minh Ribler2014-04-061-0/+269
- Added wrappers to H5Object for H5Iget_name() to get object's name ssize_t getObjName(char *obj_name, size_t buf_size = 0) const; ssize_t getObjName(H5std_string& obj_name, size_t len = 0) const; H5std_string getObjName() const; - Added tests tobject.cpp - Added to various cleanup_* functions in tests to remove generated files - Added an overload H5I_type_t getHDFObjType() to get object's type Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu) with gmake
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