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* Update Copyright headers. (#2534)Larry Knox2023-03-131-1/+0
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* clang 13 format #1933 (#1939)Allen Byrne2022-07-271-5/+5
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* 1.12: Brings C++ wrappers in line with develop, minus C++11 bits (#1604)Dana Robinson2022-04-071-27/+33
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* Misc fixes from develop nov21 - feb22 (#1580)Larry Knox2022-04-051-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Make default to build high-level tools the same as default for (#1234) high-level library. * Updated README.txt to README.md (#1375) * H5Lexists docs: Removed reference to 1.8.16 since the change is the 1.8.x releases, HDFFV-11289 * H5Oget_info_by_name, name can be any object, not just a group * Converted README.txt to README.md and updated files referring to README.txt to README.md. * removed references to README.txt * updated MANIFEST * Snprintf2 (#1399) * Replaced many uses of sprintf with safer snprintf Many very straightforward, but in a few cases added a length parameter to some private functions, because buffer length was otherwise unknowable. * Removed unnecessary use of static on small buffers This improves thread safety. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Replaced several uses of sprintf with safer snprintf (#1383) * Replaced several uses of sprintf with safer snprintf * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Used clang-tidy to change all floating point f suffixes to F (#1359) * Added another missing override keyword on a dtor (#1384) * Creating FUNDING.yml (#1427) * Creating FUNDING.yml Will add sponsor this project widget to the repo's page. * Correct file name Add sponsor widget; filename typo fixed. * Update MANIFEST * Fixed AbstractDs::getVarLenType documentation (#1441) * Committing clang-format changes * Open bsd fixes (#1195) * Fix end of line alignment. Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org> Co-authored-by: Sean McBride <sean@rogue-research.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: loricooperhdf <lori.cooper@hdfgroup.org> Co-authored-by: myd7349 <myd7349@gmail.com>
* Hdf5 merge issue #458 to hdf5_1_12 (#463)Larry Knox2021-03-121-5/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Snapshot version 1.12 release 1-3. Update version to 1.12.1-4. * First cut of the H5 public API documentation. (#80) * First cut of the H5 public API documentation. * Added H5Z "bonus track." * Applied Quincey's patch. * Added the missing patches from Quincey's original patch. * H5PL (complete) and basic H5VL API documentation. * Added H5I API docs. * Added H5L API docs. * First installment from Elena's H5T batch. * Second installment of Elena's H5T batch. * Final installment of Elena's H5T batch. * Full set of current H5F documentation. (#105) * First cut of the H5 public API documentation. * Added H5Z "bonus track." * Applied Quincey's patch. * Added the missing patches from Quincey's original patch. * H5PL (complete) and basic H5VL API documentation. * Added H5I API docs. * Added H5L API docs. * First installment from Elena's H5T batch. * Second installment of Elena's H5T batch. * Final installment of Elena's H5T batch. * Migrated documentation for SWMR functions. * Catching up on MDC functions. * Integrated the H5F MDC function documentation. * Added MDC and parallel H5F functions. * Slightly updated main page. * Added doxygen/dox/H5AC_cache_config_t.dox to MANIFEST. * Doxygen - added (mostly) beginner functions (#112) * Doxygen - added (mostly) beginner functions * Removed duplicate H5Pset_szip function * Add src/H5module.h to MANIFEST. * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Avoid aligned access for references by decoding into temporary buffer and then copying the result into the actual buffer. Update test to be more thorough with using compound datatype fields everywhere. (#206) * Modify temporary rpath for testing in java example scripts. (#230) * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Fixes various warnings noticed on Windows (#425) * Fixes various warnings noticed on Windows - Adds a prototype for our implementation of vasprintf - Return type of H5_get_utf16_str() is now non-const - Fixes possible uninitialized return type in Wremove_utf8 - Better isolation of fork() code in accum.c:test_swmr_write_big() - Better isolation of non-zlib code in dsets.c:test_filter_delete() - Removed unused variable in trefer.c:test_reference_cmpnd_obj() * Fixes clang-format issues * Applied clang-tidy readability-non-const-parameter warning fixes auto… (#429) * Automatically applied clang-tidy readability-avoid-const-params-in-decls fixes Removes useless const declarations. * Fixed most readability-non-const-parameter warnings These changes were made automatically by clang-tidy, but I manually reverted the changes related to the H5Z_func_t signature. * Reformat source with clang v10.0.1. Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Added C++11 override keyword where appropriate (#433) Added H5_OVERRIDE macro for compatibility with both C++11 and older. * Various clang tidy warning fixes (#448) * Fixed clang-tidy bugprone-reserved-identifier warnings * Fixed clang-tidy bugprone-assert-side-effect warnings * Fixed clang-tidy bugprone-copy-constructor-init warning * Fixed clang-tidy readability-redundant-preprocessor warning For error_test.c the removed code was already dead, because it was in the else of an `#if H5_USE_16_API` block. Based on H5Location.h, I think p_get_ref_obj_type was meant to be in `#ifndef DOXYGEN_SHOULD_SKIP_THIS` and an `#endif` was missing. Similarly, in the header, getObjTypeByIdx is only in H5_NO_DEPRECATED_SYMBOLS, not DOXYGEN_SHOULD_SKIP_THIS. * Fixed clang-tidy readability-redundant-string-init warnings * Fixed some clang-tidy performance-type-promotion-in-math-fn warnings * Fixed clang-tidy performance-unnecessary-value-param warnings * Reformat source with clang v10.0.1. Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Removed checks/workarounds for pre-C++89 compatibility (#449) After 30+ years, just assume that the following exist: - extension-less includes - namespaces - std:: - static_cast - bool * Fixed all clang-tidy bugprone-suspicious-string-compare warnings (#451) * Fixed all clang-tidy bugprone-suspicious-string-compare warnings This change was generated entirely by clang-tidy itself. * Reformat code with clang v10.0.1. Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Remove 2 functions incorrectly merged from develop in a cherry-pick merge of PR #451. Co-authored-by: Gerd Heber <gheber@hdfgroup.org> Co-authored-by: bljhdf <58825073+bljhdf@users.noreply.github.com> Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Quincey Koziol <quincey@koziol.cc> Co-authored-by: Sean McBride <sean@rogue-research.com> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* Update URL in source file Copyright headers for web copy of COPYINGLarry Knox2021-02-201-1/+1
| | | | file - files not in src or test.
* 1 12 changes for sanitize=address (#314)Allen Byrne2021-02-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop
* Source formattedAllen Byrne2020-10-011-131/+134
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* Various code cleanupBinh-Minh Ribler2017-12-041-29/+35
| | | | | | | | | | | Description: - Replaced H5Location::exists with H5Location::nameExists and marked H5Location::exists as deprecated. - Miscellaneous test cleanup for consistency. Platforms tested: Linux/32 2.6 (jam) Linux/64 (jelly) Darwin (osx1010test)
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Description:Binh-Minh Ribler2017-03-171-19/+22
| | | | | | | Miscellaneous clean-up: format and comments Platforms tested: Linux/64 (jelly) Darwin (osx1010test)
* Description:Binh-Minh Ribler2017-03-031-511/+511
| | | | | | Only format changes: mostly tabs vs. spaces Platforms tested: Linux/64 (jelly) - very minor
* Purpose: Add more testsBinh-Minh Ribler2017-01-031-6/+10
| | | | | | | | | Description: Added more tests for the new constructors that replaced openXxxType() Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* Description:Binh-Minh Ribler2016-10-191-17/+5
| | | | | | | | | | | | Removed obsolet macros from C++ API: H5_NO_NAMESPACE, H5_NO_STD, __cplusplus Leave OLD_HEADER_FILENAME because iostream.h might still be in use, until further checking is done. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test) Jelly
* [svn-r29759] Purpose: Code improvementsBinh-Minh Ribler2016-04-221-13/+18
| | | | | | | | | | | | Description: - Changed object in catch statements to reference - Replaced old-style casts or reinterpret_cast with static_cast - Removed unused name H5Library::need_cleanup - Removed Exception::printError from documentation Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r26458] Purpose: Fix warnings HDFFV-8658Binh-Minh Ribler2015-03-151-18/+22
| | | | | | | | | Description: Fixed many type conversion warnings and unused variables. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r24969] Description:Binh-Minh Ribler2014-04-061-8/+4
| | | | | | | | | | | | | | - Added wrappers to H5Object for H5Iget_name() to get object's name ssize_t getObjName(char *obj_name, size_t buf_size = 0) const; ssize_t getObjName(H5std_string& obj_name, size_t len = 0) const; H5std_string getObjName() const; - Added tests tobject.cpp - Added to various cleanup_* functions in tests to remove generated files - Added an overload H5I_type_t getHDFObjType() to get object's type Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu) with gmake
* [svn-r23427] Purpose: Fix bug HDFFV-8067Binh-Minh Ribler2013-03-221-2/+3
| | | | | | | | | | | | | | | | | | | | | | Description: + The C++ test failed with the new PGI compilers versions 12.4 and 12.5 + An exception thrown by an internal function, which was called by a constructor, was not propagating to the test program during the stack unwinding, so it couldn't be caught by the test and the program terminated. + Various trials and errors indicated that the problem is where an STD string converted to a char* being passed to the internal function, but confirmation has not been found yet. It could be a compiler bug. Solution: + Added a try/catch in the constructor around the internal function and re-throw the exception when it is caught. This is a workaround. + Unrelated minor fixes: removed unused variables and MESSAGE's; commented out tvlstr.cpp/test_read_vl_string_attribute because it may be redundant, and commented out H5Tpkg.h inclusion because TEST_ALIGNMENT is not added yet and probably not necessary in the C++ API. Platforms tested: Linux/32 2.6 (jam) with PGI compilers Linux/32 2.6 (jam) with GNU compilers Linux/64 2.6 (koala)
* [svn-r20052] Description:Quincey Koziol2011-02-061-8/+20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up Coverity warnings, and fix some style issues: r19735: Fix for memory leak in test/mf found by valgrind. r19736: Fix memory leak in h5repack. The buffer in copy_objects, when copying the entire dataset at once, was not checked for the presence of a vlen, and vlen storage was never reclaimed. Added check and call to H5D_vlen_reclaim(). r19772: Change H5assert() to if (H5T_VLEN != src->shared->type || H5T_VLEN != dst->shared->type) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a H5T_VLEN datatype") r19774: removed unused priv. r19775: removed unused variables r19778: Fix memory leak comparing for variable length data types. r19834: Fixed memory leaks found by valgrind. Memory errors remain for another day. Tested on: Mac OS X/32 10.6.6 (amazon) w/debug & production (h5committested on branch)
* [svn-r18335] Description:Binh-Minh Ribler2010-02-261-10/+10
| | | | | | | | | | Removed header file testhdf5.h from C++ tests to eliminate a non-standard problem on OpenVMS. It wasn't essential. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) Ray agreed to test on OpenVMS.
* [svn-r17252] Description:Binh-Minh Ribler2009-07-281-25/+23
| | | | | | | | | Fixed typos only. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r17238] Purpose: Fix bug and improve readabilityBinh-Minh Ribler2009-07-271-151/+218
| | | | | | | | | | | | | | | Description: - Revised DataSet::write to pass in correct string buffer - Added member function DataSet::getInMemDataSize() to simplify getting the dataset's data size in memory. - Added private functions for reading fixed- and variable-length string data: p_read_fixed_len and p_read_variable_len. - Added tests to write/read array of strings to datasets. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r17216] Purpose: Improve readabilityBinh-Minh Ribler2009-07-211-0/+74
| | | | | | | | | | | | Description: Divided Attribute::read into specific private functions for fixed- and variable-len string data: p_read_fixed_len and p_read_variable_len. Added test to write/read array of strings to attributes. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r15628] Description:Quincey Koziol2008-09-161-9/+9
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15502] Description:Quincey Koziol2008-08-211-21/+22
| | | | | | | | Clean up warnings. Tested on: Mac OS X/32 10.5.4 (amazon) Too minor to require h5committest
* [svn-r15395] When an attribute was opened twice and data was written with ↵Raymond Lu2008-07-221-1/+1
| | | | | | | | | | | one of the handles, the file didn't have the data. It happened because each handle had its own object structure, and the empty one overwrote the data with fill value. This is fixed by making some attribute information like the data be shared in the attribute structure. Tested on smirom, kagiso, and linew.
* [svn-r14903] Undoing change committed in r14902.Scot Breitenfeld2008-04-301-1/+0
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* [svn-r14902] Merged fortran_1_8 branch changes r14505:14901 into the trunk. ↵Scot Breitenfeld2008-04-301-0/+1
| | | | New fortran wrappers added.
* [svn-r14593] Purpose: Removing warningsBinh-Minh Ribler2008-02-181-1/+0
| | | | | | | | Description: Removed several warnings of unused terms. Platforms tested: Linux 2.6 (smirom) - very minor
* [svn-r13524] Purpose: Cleanup testsBinh-Minh Ribler2007-03-171-174/+222
| | | | | | | | | | | Description: Added extern "C" to cleanup functions as well, forgot last time. Cleaned up/Added comments to some of the newly added tests. Platforms tested AIX 5.1 (copper) Linux 2.6 (kagiso) SunOS 5.8 64-bit (sol)
* [svn-r13474] Purpose: Fixed bugsBinh-Minh Ribler2007-03-081-0/+3
| | | | | | | | | | | | | | | | | Description: VMS revealed a problem in calling C++ test functions from C AddTest. Solution: Per Quincey's suggestion, added #ifdef __cplusplus extern "C" #endif to the called C++ functions. Platforms tested AIX 5.1 (copper) Linux 2.6 (kagiso) On pending: waiting for Elena to test on VMS when she comes back.
* [svn-r13463] Syntax fix.Albert Cheng2007-03-051-1/+1
| | | | | | | | | | The copyright notices have errors in the closing comment lines that C++ compilers complain about. Fixed the comment line. Tested platform: In smirom using disable-production, enable-debug, disable-shared option. (other combinations would ended in build or test failures. Pretty sure they were caused by my changes.)
* [svn-r13446] Eliminated some compilation warnings and errors for VMSElena Pourmal2007-03-031-1/+2
| | | | | Platforms tested: VMS server
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-3/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13093] Purpose: Adding testBinh-Minh Ribler2007-01-021-0/+802
Description: Added variable-length string tests. Platforms tested AIX 5.1 (copper) SunOS 5.8 64-bit (sol) Linux 2.6 (kagiso)
generated by cgit v0.12 at 2024-07-04 21:41:39 (GMT)