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* Update shared object file numbers according to changes in v1.8.18 release.lrknox2016-11-011-11/+23
| | | | | Update autotools and libtool versions. Run bin/reconfigure.
* Purpose: Fix HDFFV-9532Binh-Minh Ribler2016-10-2316-144/+14
| | | | | | | | | | | | | Description: Removed obsolete macros from C++ API library and tests: H5_NO_NAMESPACE and __cplusplus Leave OLD_HEADER_FILENAME because iostream.h might still be in use, until further checking is done. Leave H5_NO_STD to consider retiring H5std_string first. Platforms tested: Linux/32 2.6 (jam) Linux/64 (jelly) Darwin (osx1010test)
* HDFFV-9431: allow test to be run in unique vfd folder.Allen Byrne2016-09-191-1/+2
| | | Pulled from trunk
* [svn-r30171] HDFFV-9939: convert cmake copy commands to reduce issue with ↵Allen Byrne2016-07-122-12/+7
| | | | | | | too long command lines on some platforms. Also, refactor hl/tools/gif3h5 cmake files. JAVA-1920: add plugin test with plugin that depends on hdf5
* [svn-r29787] Purpose: Add new wrapperBinh-Minh Ribler2016-04-251-5/+130
| | | | | | | | | | Description: Added wrapper for H5Tset_nbit: void DSetCreatPropList::setNbit() const. Merged from trunk r29786. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29784] Purpose: Code improvementBinh-Minh Ribler2016-04-241-1/+126
| | | | | | | | | | | | | | Description: - Removed ArrayType::rank and ArrayType::dimensions and modified the methods ArrayType::getArrayNDims and ArrayType::getArrayDims to always call the C functions to get the rank and dimensions. - Overloaded ArrayType::getArrayNDims and ArrayType::getArrayDims to provide const version and marked the non-const version deprecated. Merged from trunk r29782. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29769] Purpose: Code improvementsBinh-Minh Ribler2016-04-2215-140/+187
| | | | | | | | | | | | | Description: - Changed object in catch statements to reference - Replaced old-style casts or reinterpret_cast with static_cast - Removed unused name H5Library::need_cleanup - Removed Exception::printError from documentation Merged from trunk r29759 and r29766 Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29765] Purpose: Code cleanupBinh-Minh Ribler2016-04-221-2/+2
| | | | | | | | | | | | | | | | Description: - Removed many warnings: warning: use of old-style cast warning: enumeration value ‘H5D_VIRTUAL’ not handled in switch warning: comparison between signed and unsigned There are others of the same warnings and they will be taken care of in the next release. - Made some code reuse between overloads Merged from trunk r29340. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r29761] Purpose: Add functionBinh-Minh Ribler2016-04-222-32/+114
| | | | | | | | | | | Description: Added member function ArrayType::operator= because ArrayType has pointer data members. Merged from trunk r29306. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r28926] Purpose: Fix user reported problemBinh-Minh Ribler2016-01-187-12/+330
| | | | | | | | | | | | | | | | | Description: User Adam Rosenberger reported a failure when using the member function AbstractDs::getArrayType(). This problem was caused by missing initialization of the ArrayType's members in some cases. Solution: - Added ArrayType::setArrayInfo() to retrieve rank and dimensions of an array and store them in memory for easy access. - Re-factored a few functions to use the new function. - We'll give him 1.8.16 patch Merged from trunk r28905 Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r27989] Purpose: Partial fix of issues HDFFV-9169 and HDFFV-9167Binh-Minh Ribler2015-10-071-19/+266
| | | | | | | | | | | | | | | | | | | | | | | | | | Description: Merged from trunk r27961: Added class ObjCreatPropList in "H5OcreatProp.[h/cpp]" Added wrappers for H5P[s/g]et_attr_phase_change and H5P[s/g]et_attr_creation_order // Sets attribute storage phase change thresholds. void setAttrPhaseChange(unsigned max_compact = 8, unsigned min_dense = 6) // Gets attribute storage phase change thresholds. void getAttrPhaseChange(unsigned& max_compact, unsigned& min_dense) // Sets tracking and indexing of attribute creation order. void setAttrCrtOrder(unsigned crt_order_flags) // Gets tracking and indexing settings for attribute creation order. unsigned getAttrCrtOrder() Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r27685] Merge of r27572 from trunkDana Robinson2015-09-062-70/+3
| | | | | | | | | | Remove all VMS-specific code from the library. The exception is the VMS floating-point tests since those are special as VMS floats are odd. Those files will be considered separately. Fixes HDFFV-9495 Tested on: h5committest
* [svn-r27532] Merge of CMake dual-binary changes from CMake branch to 1.8Allen Byrne2015-08-191-2/+2
| | | | Tested: local linux (CMake branch has been tested on Windows)
* [svn-r27165] Merge 27133 & 27158 from trunk:Mohamad Chaarawi2015-06-082-7/+7
| | | | | | | | | - Add a new attribute function characterstic for format: * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* [svn-r26741] Description:Binh-Minh Ribler2015-04-061-0/+26
| | | | | | | | | | | Per user Jason Newton request, the following constructor is added: H5File(hid_t existing_id); Also, fixed H5File::openFile to close current file first before re-using the object. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r26731] Purpose: Fixed HDFFV-7947Binh-Minh Ribler2015-04-062-12/+25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: When copy constructor or constructor that takes an existing id is invoked, the C ref counter stays the same but there is an extra C++ object which later is destroyed and may cause the HDF5 id to be closed prematurely. The C++ library needs to increment the ref counter in these situations, so that the C library will not close the id when it is still being referenced. However, the incrementing of ref count left some objects opened at the end of the program, perhaps, due to compiler's optimization on cons/destructors. The constructor, that takes an existing id, needs to increment the counter but it seems that the matching destructor wasn't invoked. The workaround is to have a function for each class that has "id" that only sets the id and not increment the ref count for the library to use in these situations. These functions are "friend" and not public. The friend functions are: void f_Attribute_setId(Attribute *, hid_t) void f_DataSet_setId(DataSet *, hid_t) void f_DataSpace_setId(DataSpace *, hid_t) void f_DataType_setId(DataType *, hid_t) Merged from trunk: r26655 Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam Intel 15.0) SunOS 5.11 (emu)
* [svn-r26730] Purpose: Adding new wrappers (HDFFR-9167 partially)Binh-Minh Ribler2015-04-051-0/+116
| | | | | | | | | | | | | | | | | | | | | | | | | Description: Added wrappers for C functions H5P[s/g]et_libver_bounds and wrappers for getting object header version // Sets bounds on versions of library format to be used when creating // or writing objects. void setLibverBounds(H5F_libver_t libver_low, H5F_libver_t libver_high) const; // Gets the current settings for the library version format bounds. void getLibverBounds(H5F_libver_t& libver_low, H5F_libver_t& libver_high) const; // Returns the object header version of an object in a file or group, // given the object's name. unsigned childObjVersion(const char* objname) const; unsigned childObjVersion(const H5std_string& objname) const; Merge from trunk r26643 Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam Intel 15.0) SunOS 5.11 (emu)
* [svn-r26729] Purpose: Fix bugsBinh-Minh Ribler2015-04-052-5/+23
| | | | | | | | | | | | | | | | | | | | Description: - Changed DataType::operator= to simply copy the id of rhs instead of calling H5Tcopy because, when the operator= is invoked, a different datatype id is created and it won't have the same characteristics as rhs', specifically, if the rhs represents a named datatype, "this" would still be a transient datatype. - Added a DataType constructor that takes a PredType object, and this constructor will cause H5Tcopy to generate another datatype id, from a predefined datatype. - Fixed various mistakes in tests. - Fixed typo that caused failure on Windows. Merged from trunk r26640 and r26462 Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam/gnu and jam/icc 15) SunOS 5.11 (emu)
* [svn-r26728] Merge trunk reviwions 26669 and 26670.Larry Knox2015-04-041-1/+0
| | | | | | Removed from configure.ac VPATH section, LONE_COLON check and checks for redundant addition of /usr/include and /usr/lib to compile flags, with reconfigure. Tested h5committest
* [svn-r26727] Purpose: Fix warnings HDFFV-8658 cont.Binh-Minh Ribler2015-04-047-90/+102
| | | | | | | | | | | | | Description: Fixed many type conversion warnings and unused variables. Merged from trunk r26458, but also combined the fix in r26695 (dsets.cpp) to avoid test failure, that was undetected before committing to trunk until r26695. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r26697] HDFFV-9131: Remove obsolete/unneeded sections.Allen Byrne2015-04-012-12/+1
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* [svn-r26600] Fix CMake target calls to add new parameterAllen Byrne2015-03-261-1/+1
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* [svn-r26582] Merge r26509 from trunkJerome Soumagne2015-03-251-2/+0
| | | | Run reconfigure after merges from autotools_rework branch
* [svn-r26395] Merges r26329 from trunkDana Robinson2015-03-091-5/+0
| | | | | | | | | | | | | | Removed the configure option that allows selective disabling of individual internal filters (fletcher32, shuffle, etc.). This feature mucked up the code with a lot of #ifdefs, saved very little space and was not scalable to a general scheme for library size reduction. We've decided to remove the feature while we investigate a more general scheme for decreasing the library size. Fixes: HDFFV-9086 Tested on: h5committest
* [svn-r26371] Update cmake mininum versionAllen Byrne2015-03-051-1/+1
| | | | Update windows wix cpack process.
* [svn-r26314] Brought autotools related changes from the trunk to the branch, ↵Scot Breitenfeld2015-02-261-1/+2
| | | | r26188 r26280
* [svn-r26304] bring 26303 from trunk:Mohamad Chaarawi2015-02-251-3/+3
| | | | remove files with .clog2 extension generated by MPE when doing make clean
* [svn-r26224] merge 26180 from trunk:vms_last_support_1_8Mohamad Chaarawi2015-02-181-1/+0
| | | | | | | | | | configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes.
* [svn-r25655] Purpose: Fixed HDFFV-8928Binh-Minh Ribler2014-10-021-1/+1
| | | | | | | | | | Description: Followed hints from user's report on JIRA to remove several potential memory leaks. Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r25653] Purpose: Fixed HDFFV-4259Binh-Minh Ribler2014-10-024-4/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Used H5I_INVALID_HID instead of 0 to initialized member "id" in classes that represent HDF5 objects. For PropList, H5P_DEFAULT has to be used instead of H5I_INVALID_HID. - Added try/catch block to some dynamically allocating memory code and re-throw the bad_alloc exception with a message informing the location of the failure. (merged from trunk-r25640) Purpose: Fixed HDFFV-8852 Description: H5F_ACC_CREAT was included in the C++ API while the C library doesn't allow it yet. Possibly, in the future, but not now. In addition, the two flags H5F_ACC_RDONLY and H5F_ACC_RDWR were missing from the documentation, causing confusion that appending is not supported. Solution: - Removed H5F_ACC_CREAT from the function until the C library support it - Added H5F_ACC_RDONLY and H5F_ACC_RDWR to the comments to update the documentation (merged from trunk-r25632) Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r25402] Bring 25397/8 from trunk:Mohamad Chaarawi2014-07-101-1/+0
| | | | | | | - remove configure checks for MPI_File_get_size and Big MPI_File_set_size as they are supported by MPIO implementations today. - fix bug in t_mpi.c (HDFFV-8856) tested with h5committest.
* [svn-r25351] Add more vfd tests to smaller timeout limitsAllen Byrne2014-06-241-0/+1
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* [svn-r25222] Merge cmake_ext_mod into 1.8Allen Byrne2014-05-271-1/+1
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* [svn-r25116] Description:Binh-Minh Ribler2014-04-251-0/+4
| | | | | | | | | | - Put back Exception::printError for backward compatibility - Added static member function Exception::printErrorStack to print error stack without an instance of Exception. Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r25106] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-251-1/+0
| | | | | | | | back fix for removing rpaths from lib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath configure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and on emu and kite.
* [svn-r25062] Description:Binh-Minh Ribler2014-04-182-12/+41
| | | | | | | | | | | | Put back overloaded functions for backward compatibility: - were replaced by better prototyped versions, such as Attribute::getNam. - were modified to add const to constant arguments. Added notes for future removal in documentation. (Elena approved.) Merged from trunk r25061. Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r25030] Purpose: Fix HDFFV-8658Binh-Minh Ribler2014-04-124-6/+26
| | | | | | | | | | Description: Turned on warnings and removed some of those. (merged from trunk-r24994) Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r25028] Purpose: Fix HDFFV-8367Binh-Minh Ribler2014-04-121-0/+66
| | | | | | | | | | | | | | | Description: - Added wrappers to CommomFG for H5Oget_info_by_name() to get a child object's type (requested by user) H5O_type_t childObjType(const H5std_string& objname) const; H5O_type_t childObjType(const char* objname) const; H5O_type_t childObjType(hsize_t index, H5_index_t index_type=H5_INDEX_NAME, H5_iter_order_t order=H5_ITER_INC, const char* objname=".") const; - Added tests to tobject.cpp (merged from trunk-r24983) Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r25026] Description:Binh-Minh Ribler2014-04-121-0/+1
| | | | Added tobject.cpp.
* [svn-r25023] Description:Binh-Minh Ribler2014-04-1212-68/+351
| | | | | | | | | | | | | | | - Added wrappers to H5Object for H5Iget_name() to get object's name ssize_t getObjName(char *obj_name, size_t buf_size = 0) const; ssize_t getObjName(H5std_string& obj_name, size_t len = 0) const; H5std_string getObjName() const; - Added tests tobject.cpp - Added to various cleanup_* functions in tests to remove generated files - Added an overload H5I_type_t getHDFObjType() to get object's type (merge from trunk-24969) Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu) with gmake
* [svn-r25022] Purpose: Code improvementBinh-Minh Ribler2014-04-121-0/+118
| | | | | | | | | | | | | | | | | | | | | Description: - Overloaded Atribute::getName to take a char* for the attribute name: ssize_t Attribute::getName(char* attr_name, size_t buf_size) - Switched the arguments in this function: ssize_t getName(size_t buf_size, H5std_string& attr_name) so it became: ssize_t getName(H5std_string& attr_name, size_t buf_size) The second argument is default to 0, and can be skipped. - Removed this function: H5std_string getName(size_t buf_size); it'll collide with the first function when that function takes a NULL for the first argument, and uses default value for the second argument. - Added more tests (merged from trunk-r24938) Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu) with gmake
* [svn-r25021] Description:Binh-Minh Ribler2014-04-121-0/+4
| | | | | | | | | | Added proper deallocation/allocation to test. Revised incorrect comments. (merged from trunk-r24929) Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r24980] HDFFV-8290: Merge automake 1.14.1 changes from trunkAllen Byrne2014-04-073-75/+466
| | | | Tested: h5committest
* [svn-r24928] Purpose: Fix HDFFV-7907Binh-Minh Ribler2014-03-316-6/+155
| | | | | | | | | | | | | | | | | | | | | | Description: Added transform property list functions // Constructor creates a dataset transform property list. DSetMemXferPropList(const char* expression); // Sets data transform expression. void setDataTransform(const char* expression) const; void setDataTransform(const H5std_string& expression) const; // Gets data transform expression. ssize_t getDataTransform(char* exp, size_t buf_size=0) const; H5std_string getDataTransform() const; Added test file tdspl.cpp. Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r24913] Purpose: Fix HDFFV-8642Binh-Minh Ribler2014-03-272-6/+96
| | | | | | | | | | | Description: Added CompType::setSize(size_t size) to set size for compound data type as H5Tset_size had been changed. Merged from trunk-24912 Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r24906] Merge latest CMake changes from trunk.Allen Byrne2014-03-262-28/+28
| | | | Tested: local linux
* [svn-r24878] Description:Quincey Koziol2014-03-241-1/+0
| | | | | | | | | | | | | | | | | | | | | Bring r24864 from trunk to 1.8 branch: Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial (daily tested on trunk)
* [svn-r24870] Description:Binh-Minh Ribler2014-03-232-2/+15
| | | | | | | | | | | | | | | - Added another overload for char* argument: ssize_t getComment(const char* name, const size_t buf_size, char* comment) - Changed default value to 0 for the other two getComment methods - Added HDmemset to after every char string allocation to clear the buffer - Added a null terminator to the comment returned from the C call, in getComment methods - Some minor cleanup Merged from trunk: -r24865 -r24867 Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r24868] Purpose: Applied user patch, HDFFV-8623Binh-Minh Ribler2014-03-232-4/+4
| | | | | | | | | | | | | Description: Applied patch from user Jason Newton. JIRA issue HDFFV-8623, patch 0009, improve c++ compatibility with exceptions. All additions of "throw()" are included. Exception::what() is not added because it is not necessary. It was suggested for the name, which follows stdlib. Merged from trunk -r24830 Platforms tested: SunOS 5.11 (emu) Linux/32 2.6 (jam) Linux/64 2.6 (koala)/PGI compilers
* [svn-r24732] Fix for reconfigure, which fails because ↵Larry Knox2014-02-221-0/+1
| | | | | | LT_ADD_LIBHDF5_DEPENDENCY is used in Makefiles but the declaration in configure.ac is missing. Copied declaration from trunk. Tested with h5committest on jam ostrich koala and platypus(cmake).
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