| Commit message (Collapse) | Author | Age | Files | Lines |
|
|
|
| |
Tested jam, local linux
|
|
|
|
|
|
|
| |
Added code to install README in share/hdf5_examples
Set permissions on README file to rw-r--r--.
Tested with h5committest, make install and make uninstall.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
- Replaced PredType::NotAtexit() with PredType::AtExit(H5CPP_EXITED)
and used PredType::AtExit as a flag to detect when all predefined
types have been destroyed. Then, H5close will be called to terminate
the library after its being re-initiated when the PredType destructors
were activated. This change removed the memory leaks shown by the
user's sample program in HDFFV-2761.
- Added H5CPP_EXITED for PredType::AtExit to use as a flag
- Rearranged constructors in CompType to fix bug HDFFV-7852
- Updated some inaccurate comments
- Removed stream functions from FileAccPropList
- Replaced H5_VMS with appropriate macro in H5IdComponent.cpp
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 2.6 (amani)
SunOS 5.10 (linew)
|
|
|
|
|
|
| |
Merge fix for HDFFV-398 (r22146 and r22147) from trunk to hdf5_1_8.
Tested:
h5committest
|
|
|
|
| |
in, and HDF5 files.
|
|
|
|
|
|
|
|
|
|
| |
Description:
Closed various HDF5 objects in DataSet::getInMemDataSize and
Attribute::getInMemDataSize to remove some memory leaks.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 2.6 (amani)
SunOS 5.10 (linew)
|
|
|
|
| |
standard 2.8.6
|
|
|
|
|
|
|
| |
Update cmake to generate source folders in VS
Brought parallel changes from trunk
Tested: local linux
|
| |
|
| |
|
|
|
|
|
|
|
|
|
|
|
| |
branch, used:
svn merge -r 20506:21414 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
Tested: jam (gnu, intel, pgi compilers)
Also merged effected non-Fortran files:
svn merge -r21247:r21248 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/src/libhdf5.settings.in
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Fix HDFFV-7592
"Remove PACKEDBITS option from autotools files"
Description:
The code for h5dump's packed bits feature was
conditionally compiled in via this option during its
'beta' release in 1.8.5. Now that the feature is fully
supported, h5dump has since been changed to always
compile the packed bits code (having removed the #ifdef
H5_HAVE_H5DUMP_PACKED_BITS checks), so this option in
configure is no longer needed.
This commit removes the --enable-h5dump-packed-bits
configure option, including the help summary from
'./configure --help' and the libhdf5.settings output
summary, the PACKED_BITS Makefile variable, and the
definition of H5_HAVE_H5DUMP_PACKED_BITS define in
appropriate pubconf header files (which has already
been removed from use in source code as of r20722).
Note that this option was never added to the trunk,
thus this commit only need occur on the 1.8 branch.
Tested:
- Configure output, help, & summary verified on jam
- h5committested
|
|
|
|
| |
1.8.7 r 20718. The default prefix in the scripts will use the compile scripts in the installed bin directory.
|
|
|
|
|
|
| |
in 1.8.6 when its API was changed, but since it wasn't I'm
manually fixing up these numbers in 1.8 and 1.8.7 branches
for the time being.
|
| |
|
|
|
|
|
|
|
|
| |
Merge revisions 20475, 20502, and 20504 from trunk to 1.8 branch.
Tested:
Tested on jam, fred, bangan (CYGWIN), and h5committested.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
unlimited. I brought the changes from the trunk as below:
1. I added test cases for contiguous, compact, and chunked, and external storage datasets, and also attribute.
The test includes dataspace selections.
2. I added a test case of extending dataset of zero dimension size and shrinking back to zero dimension size.
3. I updated the Makefile to include the new data file to be cleaned up.
4. The dataspace code has another bug - when the maximal dimension isn't passed in for H5Sset_extent_simple, it
is supposed to be same as the dimension. The current library sets NULL to it. I corrected it and added a
test case to it.
5. I corrected the tests of Fortran and C++ for the problem in point 3.
Tested on jam, heiwa, and amani.
|
|
|
|
|
|
| |
examples to use specific names for compiled executable files instead of a.out, which did not work on Cywin as it produces a.exe by default. Removed issue from known problems section of RELEASE.txt.
Tested with h5committest and Cygwin 1.7.8 on Windows 7.
|
|
|
|
| |
bring r20322 from trunk
|
|
|
|
|
|
|
|
| |
This will replace the list of ignore tests in CTestCustom.cmake file.
Bring back from trunk
Tested: local linux
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r20052 from trunk to 1.8 branch:
Clean up Coverity warnings, and fix some style issues:
r19735:
Fix for memory leak in test/mf found by valgrind.
r19736:
Fix memory leak in h5repack. The buffer in copy_objects, when copying the
entire dataset at once, was not checked for the presence of a vlen, and vlen
storage was never reclaimed. Added check and call to H5D_vlen_reclaim().
r19772:
Change H5assert() to
if (H5T_VLEN != src->shared->type || H5T_VLEN != dst->shared->type)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a H5T_VLEN datatype")
r19774:
removed unused priv.
r19775:
removed unused variables
r19778:
Fix memory leak comparing for variable length data types.
r19834:
Fixed memory leaks found by valgrind. Memory errors remain for another day.
Tested on:
Mac OS X/32 10.6.6 (amazon) w/debug & production
(h5committested on branch)
|
| |
|
| |
|
|
|
|
|
|
| |
macro use for checking libtype.
Tested: Windows
|
|
|
|
| |
programs. Added BUILT_AS_STATIC_LIBRARY define to set the windows import/export defines correctly for static libraries.
|
|
|
|
|
|
| |
Bring r19870 from trunk
Tested: local linux
|
|
|
|
|
|
| |
m4 to version 1.4.15.
Tested with h5committest on amani, jam and heiwa.
|
|
|
|
| |
Tested: local linux
|
|
|
|
|
|
| |
from example source files that are installed in .../share/hdf5_examples/. This will address bugzilla #2025.
Tested with h5committest on amani, heiwa, and jam.
|
| |
|
|
|
|
|
|
| |
Otherwise the linker doesn't find the functions called by the program being compiled. $LIBS is ofr libraries specified by the compile script user.
We don't currently have any tests checked in to do this. Tested with netCDF-4 and hdf5 on jam.
|
|
|
|
|
|
| |
proper variables.
Tested: local linux
|
|
|
|
|
|
| |
LDFLAGS in the correct place and to enable the script user to set and override CFLAGS, CPPFLAGS, CXXFLAGS, FFLAGS, LDFLAGS, and LIBS that take pprecedence over the library paths and compile flags from the hdf5 build.
Tested with h5committest on amani, heiwa, and jam.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
has been removed. According to the official description of DESTDIR by Gnu at
http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is
prepended to the normal and complete install path that it precedes for the
purpose of installing in a temporary directory which is useful for building
rpms and other packages. The '/' after ${DESTDIR} will be followed by another
'/' at the beginning of the normal install path. When DESTDIR is empty the
path then begins with '//', which is incorrect and causes problems at least for
Cygwin.
The change made in config/commence.am affects many Makefile.*s when bin/reconfigure
is run. EXAMPLEDIRs had to be corrected individually.
Also the scripts to run examples after they are installed have checks added to see
that the fortran and c++ directories are present before trying to run the scripts
in them.
Tested with h5committest on amani, heiwa and jam.
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
After a C++ API object is closed, its id should be reset regardless
of the reference count of the underlying HDF5 object. User reported
the bug for Group, but it's applicable to all other objects. Fixed.
Platforms tested:
Linux/32 2.6 (jam)
FreeBSD/64 6.3 (liberty)
SunOS 5.10 (linew)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
and m4 to version 1.4.14. Also added m4 directory for m4 macros according to autoconf suggestion.
Tested with h5committest on amani, jam, and heiwa, and on linew.
-This line, and those below, will be ignored--
M hdf5_1_8/test/Makefile.in
A hdf5_1_8/m4
AM hdf5_1_8/m4/ltsugar.m4
AM hdf5_1_8/m4/libtool.m4
AM hdf5_1_8/m4/ltversion.m4
AM hdf5_1_8/m4/lt~obsolete.m4
AM hdf5_1_8/m4/ltoptions.m4
M hdf5_1_8/configure
M hdf5_1_8/Makefile.in
M hdf5_1_8/testpar/Makefile.in
M hdf5_1_8/configure.in
M hdf5_1_8/src/Makefile.in
M hdf5_1_8/tools/Makefile.in
M hdf5_1_8/tools/misc/Makefile.in
M hdf5_1_8/tools/h5dump/Makefile.in
M hdf5_1_8/tools/h5repack/Makefile.in
M hdf5_1_8/tools/h5jam/Makefile.in
M hdf5_1_8/tools/h5diff/Makefile.in
M hdf5_1_8/tools/lib/Makefile.in
M hdf5_1_8/tools/h5copy/Makefile.in
M hdf5_1_8/tools/h5import/Makefile.in
M hdf5_1_8/tools/h5stat/Makefile.in
M hdf5_1_8/tools/h5ls/Makefile.in
M hdf5_1_8/hl/test/Makefile.in
M hdf5_1_8/hl/tools/Makefile.in
M hdf5_1_8/hl/tools/gif2h5/Makefile.in
M hdf5_1_8/hl/Makefile.in
M hdf5_1_8/hl/src/Makefile.in
M hdf5_1_8/hl/c++/test/Makefile.in
M hdf5_1_8/hl/c++/Makefile.in
M hdf5_1_8/hl/c++/src/Makefile.in
M hdf5_1_8/hl/c++/examples/Makefile.in
M hdf5_1_8/hl/fortran/test/Makefile.in
M hdf5_1_8/hl/fortran/Makefile.in
M hdf5_1_8/hl/fortran/src/Makefile.in
M hdf5_1_8/hl/fortran/examples/Makefile.in
M hdf5_1_8/hl/examples/Makefile.in
M hdf5_1_8/config/commence.am
M hdf5_1_8/MANIFEST
M hdf5_1_8/c++/test/Makefile.in
M hdf5_1_8/c++/Makefile.in
M hdf5_1_8/c++/src/Makefile.in
M hdf5_1_8/c++/examples/Makefile.in
M hdf5_1_8/bin/ltmain.sh
M hdf5_1_8/bin/reconfigure
M hdf5_1_8/perform/Makefile.in
M hdf5_1_8/fortran/test/Makefile.in
M hdf5_1_8/fortran/testpar/Makefile.in
M hdf5_1_8/fortran/Makefile.in
M hdf5_1_8/fortran/src/Makefile.in
M hdf5_1_8/fortran/examples/Makefile.in
M hdf5_1_8/aclocal.m4
M hdf5_1_8/examples/Makefile.in
|
| |
|
|
|
|
| |
Tetsed: local linux
|
|
|
|
|
|
|
|
| |
Corrected use/name of source folder aliases.
Duplicated FindMPI.cmake so that non-c++ compiler is found first (recommemded commands did not work).
Bring r19325 from trunk
Tested: local linux with mpich
|
|
|
|
| |
Tested: Local Linux
|
|
|
|
|
|
|
| |
Update pointer to HDF5 docs to point to 'hdfgroup.org'.
Testing: Only the process of generating the "C++ RM" is tested.
The software has not been tested with this change as it should
affect only the doxygen-generated documentation.
|
|
|
|
|
|
|
|
| |
/NODEFAULTLIB:MSVCRT
Added VERSION vars for inclusion into auto snapshot version update script
Tested windows
|
|
|
|
| |
Tested: local linux and Windows
|
|
|
|
| |
Updated RELEASE.txt file accordingly.
|
|
|
|
|
|
| |
configure.in to add compiler version information for fortran and C++ in the settings file and the configure output for our common compilers on linux, solaris, and mac(gnu only).
Tested: amani, jam, linew (h5committest) and with configure on these machines and tejeda.
|
|
|
|
|
|
| |
scripts are installed with the examples, and there is one script to run the scripts for all hl examples and another to run the scripts for all the examples.
Tested: amani, jam, linew (h5committest).
|
|
|
|
| |
No test as it is actually not used in branch
|
|
|
|
|
|
| |
DESTDIR=<install directory> install, installcheck and uninstall is supported for installing examples, since they are now installed as part of make install. This was necessary for rpmbuilds, but should also be supported otherwise.
Tested: amani, jam, linew with committest, rpmbuild on jam and amani.
|