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* [svn-r10212] Purpose: Added more wrappersBinh-Minh Ribler2005-03-1422-21/+296
| | | | | | | | | | | | | | | Description: Added the following to the C++ library + overloaded functions: string CommonFG::getObjnameByIdx(hsize_t idx) H5T_order_t AtomType::getOrder() + wrappers for H5*close + wrappers for H5Arename, H5Aget_storage_size, and H5Dget_storage_size Platforms tested: Linux 2.4 (heping) AIX 5.1 (copper) SunOS 5.8 64-bit (sol)
* [svn-r10158] Purpose:James Laird2005-03-074-507/+940
| | | | | | | | | | | | | | | | | | | | | | Automake version upgrade Description: Upgraded automake version from 1.6.2 to 1.9.5. Changed bin/reconfigure script to use automake 1.9.5. Changed configure.in and Makefiles to use new FCFLAGS and FC variables instead of FFLAGS and F9X. Automake and configure should now do the lion's share of the work supporting Fortran 9X; macros in acsite.m4 are now mostly unused (will be cleaned later). Altered how configure handles pmake; now root-level Makefile.in is processed by bin/reconfigure to have a .MAKEFLAGS target, since automake no longer allows us to define unused variables. Configure now always checks for C++ compiler even if it is not used, since automake thinks this is the Right Thing To Do and will break otherwise. Platforms tested: Sol, copper, heping, mir, sleipnir, eirene, pommier, kelgia, modi4.
* [svn-r10123] Purpose:Albert Cheng2005-03-024-12/+0
| | | | | | | | | | | | | | | | | | | | | | | Removed GASS configuration and software packages associated with it. The following software are no longer configurable. checking for main in -lcrypto... yes checking for SSL_get_version in -lssl... yes checking globus_common.h usability... yes checking globus_common.h presence... yes checking for globus_common.h... yes checking for globus_module_activate in -lglobus_common... yes checking for main in -lglobus_gass_cache... yes checking for main in -lglobus_gaa... yes checking for main in -lglobus_gss... yes checking for main in -lglobus_gss_assist... yes checking for main in -lglobus_io... yes checking for main in -lglobus_gass_transfer_assist... yes checking for main in -lglobus_gass_transfer... yes checking for globus_gass_open in -lglobus_gass_file... yes Platforms tested: h5committested (but copper was down.) tested in modi4 too.
* [svn-r10108] Purpose:James Laird2005-02-284-8/+15
| | | | | | | | | | | | | | Bug fix Description: C++ tests would die with strange linking-type errors. Solution: C++ build needs to be static, too. Applied -static flags liberally in c++/src and c++/test directories. Platforms tested: sleipnir, heping
* [svn-r10093] Purpose: Fix bugBinh-Minh Ribler2005-02-262-21/+2
| | | | | | | | | Description: Fixed typo in using namespace; it was mistakenly opening the namespace. Platforms tested: Linux 2.4 (heping) Very minor, and tested 3 platforms for 1.6 branch
* [svn-r10076] Purpose:James Laird2005-02-244-4/+4
| | | | | | | | | | | | | Bug fix Description: c++/src directory was having trouble finding main HDF5 library. Solution: Replaced AM_CPPFLAGS with INCLUDES to include files in main src directory. Platforms tested: mir, modi4, verbena
* [svn-r10066] Purpose:James Laird2005-02-234-0/+16
| | | | | | | | | | Libtool upgrade Description: HDF5 was using libtool 1.4.2. Upgraded to libtool 1.5.14. Platforms tested: verbena, heping, pommier, copper, modi4, arabica
* [svn-r10050] Purpose: Fix bugzilla #241Binh-Minh Ribler2005-02-207-6/+38
| | | | | | | | | | | Description: Checked return value from C API for failure condition. Added/Modified some comments appropriately. Platforms tested: Linux 2.4 (heping) AIX 5.1 (copper) - tests passed but there were some old warnings about duplicate symbols on std::string; I'll check on that.
* [svn-r10022] Purpose:Xiaowen Wu2005-02-174-0/+4
| | | | | | | | | | | | | | New feature. Description: Add the scaleoffset internal library filter. Solution: Platforms tested: heping, copper, arabica Misc. update:
* [svn-r10016] James Laird2005-02-164-4/+0
| | | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: modi4 dies during build with strange errors. The root cause of these is a two-year-old hack in HDF5's libtool script that only takes effect on IRIX. Solution: Edited the libtool hack (by editing ltmain.sh) to correct a bug in the hack. Also made sure that compiler-specific DEFAULT_LIBS are used when linking. Platforms tested: sleipnir, copper, modi4, sol
* [svn-r9988] Purpose:James Laird2005-02-115-74/+30
| | | | | | | | | | | | | | | | | | | | Bug fix Description: pmake (on modi4, for instance) complains about undefined variables if it is run without the -V flag, which turns those errors to warnings. Solution: Added test to configure.in to see if $MAKE will allow Makefiles with undefined variables. If not, sets -V flag in AM_MAKEFLAGS. Ensured that all custom make targets use AM_MAKEFLAGS. Also defined all variables that caused errors in top-level Makefile.am. This means that pmake can be used to build hdf5 *from the top level only*. To run make from a subdirectory, still need to use -V flag (or use make or gmake). Platforms tested: modi4, heping, copper, sleipnir
* [svn-r9930] James Laird2005-02-034-4/+4
| | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: Parallel builds were breaking in tools/lib Solution: talign didn't realize it depended on libh5tools.la because its dependencies listed the full path (../../tools/lib/libh5tools.la). Changed this, and made similar changes in a couple of other directories. This checkin should also add the --foreign flag to every Makefile.in Platforms tested: sleipnir (minor change)
* [svn-r9928] Purpose:Quincey Koziol2005-02-034-4/+4
| | | | | | | | | | | | | New feature Description: Add basic code for new B-tree implementation. They don't do much yet, aren't hooked up to anything yet and the format may change, but I'd like to start getting them into the daily tests. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9920] Purpose:James Laird2005-02-024-8/+12
| | | | | | | | | | | | | | | | | | | Bug fix Description: Found the permanant fix to automake/CVS dependency problem Solution: Added AM_MAINTAINER_MODE macro to configure.in. Now automake will never try to regenerate Makefiles, Makefiles.in, configure, H5config.h, etc. when they are out of date, nor will it print any warnings. Developers should be very very careful to use reconfigure script, and can add --enable-maintainer-mode flag to configure on heping to regenerate these files correctly. Platforms tested: heping sleipnir copper
* [svn-r9915] Purpose:James Laird2005-02-024-24/+24
| | | | | | | | | | | | | | | Bug fix Description: Configuration files' timestamps were incorrect. Solution: Update Makefiles.in. Also added correct paths to autotools on heping, so heping build should be able to re-generate configuration files even if they are still broken. Platforms tested: sleipnir
* [svn-r9912] Purpose:James Laird2005-02-014-348/+32
| | | | | | | | | | | | | | | | | Bug fix Description: Dependencies between configure files (aclocal, configure.in, configure, Makefiles.am and .in) are still causing Makefiles to try to run autotools during build. Solution: Committed all Makefiles.in to update their timestamps. As a temporary measure, forcibly prevented automake from running autotools during build by redefining the variables it uses. Platforms tested: sleipnir (No changes to Makefile content)
* [svn-r9907] Purpose:James Laird2005-02-014-0/+4
| | | | | | | | | | | | | Bug fix Description: Different compilers use different flags to include Fortran module files Solution: Changed boilerplate to use configure variable rather than hardcoded -M flag. Platforms tested: sleipnir, sol, copper
* [svn-r9902] Purpose:James Laird2005-02-0111-1843/+2988
| | | | | | | | | | | | | | | Configuration feature Description: HDF5 now uses automake to generate Makefiles Solution: Makefile.in files are now generated from Makefile.am files. To reconfigure (after chaning a Makefile.am or configure.in): /bin/sh bin/reconfigure.sh Platforms tested: Many
* [svn-r9890] Purpose: Clean up testsBinh-Minh Ribler2005-01-314-119/+163
| | | | | | | | | | | | | | | | Description: + C tests' macro VERIFY casts values to 'long' for all cases. Since there are no operator<< for 'long long' or int64 in VS C++ ostream, I casted the hsize_t/hssize_t values passed to verify_val to 'long' as well. If problems arise later, this may have to be specificly handled with an overload - th5s.cpp + Added the use of InvalidActionException for when an action should cause an exception but didn't - th5s.cpp and tfile.cpp + Small changes to improve failure reports Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene)
* [svn-r9888] Purpose: Fixed bugBinh-Minh Ribler2005-01-301-3/+3
| | | | | | | | | | | | Description: H5PredType copy constructor was made "protected" accidentally. Solution: Moved it back into "public" section. Platforms tested: Linux 2.4 (eirene) Very minor and already tested on two platforms in 1.6 branch.
* [svn-r9838] Purpose:Quincey Koziol2005-01-191-8/+40
| | | | | | | | | | | | | | | | | | Bug fix Description: Correctly retire the H5E_LEN setting, now that the FORTRAN and C++ APIs have been corrected to not use it either. Solution: Pass in the string buffer length for FORTRAN In the C++ API, call H5Eget_msg() in a manner similar to the way H5Fget_name() is called. Platforms tested: Linux 2.4 (heping) w/FORTRAN & C++ Solaris 2.7 (arabica) w/FORTRAN & C++
* [svn-r9834] Purpose: Bug fixElena Pourmal2005-01-181-27/+29
| | | | | | | | | | Description: h5c++ couldn't create object files Solution: Brought changes from 1.6 to 1.7 Platforms tested: arabica Misc. update:
* [svn-r9829] Purpose: Clean up testsBinh-Minh Ribler2005-01-163-177/+250
| | | | | | | | | | | | | | | | | | | Description: + replaced "goto error" with throw exceptions + properly cleanup dynamically allocated memory in failure cases, for in some cases, the execution continues on after the failures were reported. + added test utility class InvalidActionException for when an action should cause an exception but doesn't. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene) Note that there was an error due to the missing symbol H5E_LEN. To be able to test my changes, I temporarily replaced H5E_LEN in c++/src with a constant as in the C tests, before the problem can be fixed. This value doesn't effect the C++ tests at all, at this time.
* [svn-r9789] Purpose: Tests cleanupBinh-Minh Ribler2005-01-101-24/+48
| | | | | | | | | | | | | Description: C tests' macro VERIFY casts values to 'long' for all cases. Since there are no operator<< for 'long long' or int64 in VS C++ ostream, I casted the hsize_t/hssize_t values passed to verify_val to 'long' as well. If problems arise later, this may have to be specificly handled with an overload. Platforms tested: Linux 2.4 (eirene) Windows 2000
* [svn-r9737] Purpose: Clean up testsBinh-Minh Ribler2005-01-031-2/+2
| | | | | | | | | Description: Corrected a misuse of a variable causing access violation. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene)
* [svn-r9727] Purpose:Quincey Koziol2004-12-2921-65/+73
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9698] Purpose: Correct typoBinh-Minh Ribler2004-12-211-1/+1
| | | | | | | | | Description: Accidentally edited this file and removed a couple characters from a defined name, thus caused undefined error in daily test. Fixed! Platforms tested: SunOS 5.7 (arabica)
* [svn-r9696] Purpose: Clean up testsBinh-Minh Ribler2004-12-205-223/+367
| | | | | | | | | | | | Description: Replaced cout's with cerr's. Replaced macro VERIFY with template function verify_val to verify read data/info. Cleanup various places in the tests to make them more consistent. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene)
* [svn-r9650] Purpose:Pedro Vicente Nunes2004-12-102-2/+8
| | | | | | | | | | | | | added support for the hl library int the c++ examples Description: Solution: Platforms tested: linux Misc. update:
* [svn-r9555] Purpose: Fixing minor bugBinh-Minh Ribler2004-11-211-1/+1
| | | | | | | | | | | | | | | Description: Xuan reported that "uint" used in this example caused error when built with MS Visual Studio compiler. Solution: Changed to "int." Platforms tested: Very minor, so I only tested on eirene. I'll let Xuan know to check on Windows. Misc. update:
* [svn-r9234] Purpose:Quincey Koziol2004-09-092-4/+4
| | | | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Tweak recent "forward compatibility" changes to the H5E* API (which allowed for the old H5E API functions to remain unchanged) by allowing for the error stack callback function (H5E_auto_t) to also remain unchanged from the 1.6 branch. This required changing the H5E{get|set}_auto routines to have the old style H5E_auto_t type (which didn't have a stack ID parameter) and the new H5E{get|set}_auto_stack routines to have a newer "H5E_auto_stack_t" type (which has a stack ID parameter). This should make the H5E API changes as forwardly compatible as possible. One side-affect of this change was that it was impossible to determine if the current auto error callback was the old style (H5E_auto_t) or the new style (H5E_auto_stack_t) of callback, so a new API function (H5Eauto_is_stack) was adde to query this. Platforms tested: FreeBSD 4.10 (sleipnir) IRIX64 6.5 (modi4) h5committest
* [svn-r9183] Purpose: New featureRaymond Lu2004-09-011-6/+6
| | | | | | | | | | | | Description: Restore 6 old error API functions back to the library to be backward compatible with v1.6. They are H5Epush, H5Eprint, H5Ewalk, H5Eclear, H5Eset_auto, H5Eget_auto. These functions do not have error stack as parameter. Solution: Internally, these functions use default error stack. Platforms tested: h5committest and fuss. Misc. update: RELEASE.txt
* [svn-r9133] Purpose: Clean up codeBinh-Minh Ribler2004-08-214-31/+1
| | | | | | | | | | | Description: The private function p_close was removed previously, but I inadvertently put it back in a few places, while transferring the changes from 1.6 branch. These are removed now. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene)
* [svn-r9129] Purpose: Updating documentationBinh-Minh Ribler2004-08-2038-688/+843
| | | | | | | | | | Description: Updated various function headers for the RM as reviewing progresses. Rearranged functions in header files for more sensible look of the RM. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene)
* [svn-r9128] Purpose: Code updatingBinh-Minh Ribler2004-08-202-109/+104
| | | | | | | | | Description: Renamed some private members and member functions appropriately. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene)
* [svn-r9127] Purpose: Adding wrapper for new C API and other updatesBinh-Minh Ribler2004-08-208-167/+356
| | | | | | | | | | | | | Description: Added wrappers for H5Fget_name: H5File::getFileName H5Object::getFileName Moved some functions from Group into the base class CommonFG for H5File too. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene)
* [svn-r9126] Purpose: Updating RMBinh-Minh Ribler2004-08-201-8/+29
| | | | | | | | | | Description Added the rest of the C++ examples to the RM. Platforms tested: Verified on Windows Misc. update:
* [svn-r9115] Purpose:Albert Cheng2004-08-191-7/+4
| | | | | | | | | | | | | | | | | | | | | | | | | feature Description: Another revamp of the test interface. TestInit: is used to register Test Program name, test program specific Usage and option parsing routines. TestUsage: will invoke extra usage routine if provided. TestParseCmdLine: will invoke extra option parsing routine if provided. GetTestSummary() and GetTestCleanup() replaces the previous Summary and CleanUp arguments of TestParseCmdLine. test/testhdf5, test/ttsafe.c, testpar/t_mpi.c, testpar/testphdf5.c: All have been updated to use the new Test Routines. testpar/t_mpi.c: Also a fix of a compiler optimization bug when pgcc in Linux is used to compile it. Changed buf[] and expected to unsigned char type to avoid a bug that failed to do sign-extension. Platforms tested: "h5committested" Also tested thread-safe option in eirene.
* [svn-r9083] Purpose: Fix minor problemBinh-Minh Ribler2004-08-141-1/+1
| | | | | | | | | | | | | Description: Added an argument to the call to TestParseCmdLine because its prototype has just been changed. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene) Misc. update:
* [svn-r9049] Purpose: Clean up codeBinh-Minh Ribler2004-08-078-86/+0
| | | | | | | | | | | | | Description: Removed private functions p_close, that were left over from the removal of the reference counting mechanism. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene) Misc. update: release_docs/RELEASE will be updated soon.
* [svn-r9048] Purpose:Binh-Minh Ribler2004-08-071-2/+4
| | | | | | | | | | | | Add new files Description: Added H5VarLenType.cpp and H5ArrayType.cpp to LIB_SRC Added H5CppDoc.h, H5VarLenType.h, and H5ArrayType.h to PUB_HDR Platforms: SunOS 5.7 (arabica) Linux 2.4 (eirene)
* [svn-r9046] Purpose:Binh-Minh Ribler2004-08-0723-211/+150
| | | | | | | | | | | | | | | | | | | Code cleanup Description: DataType::commit had incorrect parameter, H5Object. Changed it to CommonFG, for H5File and Group. The change caused additional header files needed for several other cpp files. Moved some functions from Group into the base class CommonFG for H5File too. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene) Misc. update:
* [svn-r9045] Purpose: Updated documentationBinh-Minh Ribler2004-08-071-0/+69
| | | | | | | | | | | | Description: Added mainpage to the RM via the new file H5CppDoc.h. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (verbena) This new file will be added to windows project soon. Misc. update:
* [svn-r8997] Purpose:Quincey Koziol2004-08-032-2/+3
| | | | | | | | | | | Code cleanup Description: Clean up some temporary files. Platforms tested: FreeBSD 4.10 (sleipnir) w/C++ Not tested by h5committest
* [svn-r8850] Purpose: Fixing minor bugBinh-Minh Ribler2004-07-091-3/+1
| | | | | | | | | | | Description: Changed call to H5File::getFileSize according to C library and removed CHECK for this call because failure will be handled by exception. Platforms tested: FreeBSD 4.10 (sleipnir) Linux 2.4 (eirene)
* [svn-r8849] Purpose: Adding documentation with doxygen and fixing minor bugBinh-Minh Ribler2004-07-092-4/+5
| | | | | | | | | | | | Description: Added function headers with doxygen. Changed H5File::getFileSize according to C library. Platforms tested: Linux 2.4 (eirene) FreeBSD 4.10 (sleipnir) Misc. update:
* [svn-r8837] Purpose: Update doc and fix minor bugBinh-Minh Ribler2004-07-0810-112/+159
| | | | | | | | | | | Description: H5IdComponent.cpp: initialized a pointer to NULL H5Object.cpp: removed functions being added by mistake Update function headers for the rest. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene)
* [svn-r8822] Purpose: Update Makefile.inBinh-Minh Ribler2004-07-071-2/+1
| | | | | | | | | | Description: Removed macro H5_FILES from Makefile.in so that output files from the example programs will not be installed. Platforms tested: Linux 2.4 (eirene) SunOS 5.7 (arabica)
* [svn-r8820] Purpose: Bug fixRaymond Lu2004-07-073-6/+9
| | | | | | | Description: After changing H5Fget_filesize, forgot to update C++. Platforms tested: Tested for 1.6
* [svn-r8816] Purpose: Remove filesBinh-Minh Ribler2004-07-076-0/+0
| | | | | | | | | | Description: These data files are generated by the example programs and shouldn't need to be in the CVS. Removed them. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene)
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