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* [svn-r12452] Purpose:James Laird2006-07-052-4/+4
| | | | | | | | | | | | | | | | | | | | | | Feature Description: Revised Link APIs. Solution: New link APIs use H5L* H5*create_expand do not create links to the objects created; this must be done manually with H5Llink. Added APIs to link an object given its ID (H5Llink), to copy links (H5Lcopy), and changed creation APIs (H5Lcreate_hard and H5Lcreate_soft) and query API (H5Lget_linkinfo instead of H5Gget_objinfo). All old APIs are still supported in H5Gdeprec.c . Platforms tested: sol, mir, copper Misc. update: Forgot to update MANIFEST and release docs. Will do after checkin.
* [svn-r12440] Purpose:Quincey Koziol2006-06-276-13/+13
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r12431] Purpose:James Laird2006-06-216-68/+37
| | | | | | | | | | | | | | Configuration feature Description: 'make install' now tests both static and shared libraries if both are installed. Solution: Previously, shared libraries were only tested when static libraries were not installed. Also cleaned up line in commence.am that was including HL library in all Makefiles. Platforms tested: mir (Makefile change only)
* [svn-r12411] Purpose:James Laird2006-06-134-0/+4
| | | | | | | | | | | | | | Bug fix - bugzilla #552 Description: On Cray X1, trying to use : as an argument confused the system. Solution: Added a test in configure to see if : as an argument is bad. If so, skipped the test. Platforms tested: mir, Cray X1 (change to configure only)
* [svn-r12404] Purpose: Fix typos/formatsBinh-Minh Ribler2006-06-0538-309/+377
| | | | | | | | | | Description: Fixed typos and re-arranged some functions to be in sync with 1.6. Platforms tested: Linux 2.4 (heping) SunOS 5.9 (shanti) AIX 5.1 (copper)
* [svn-r12369] Purpose: Fixed bugBinh-Minh Ribler2006-05-231-5/+5
| | | | | | | | | | | | | | | | | Description: Shanti compiler destroy unnamed objects later than others, which caused some reference counting test fail. Revised the test so that destructors are called at the same time, regardless the differences of compiler implementation. Revised some constructors, close, operator=, and destructors to make sure that all the object ids are handled properly. Platforms tested: Linux 2.4 (heping) SunOS 5.9 (shanti) HPUX 11.00 (kelgia) AIX 5.1 (copper)
* [svn-r12368] Purpose: Fixed bugBinh-Minh Ribler2006-05-2310-163/+166
| | | | | | | | | | | | | | | | | Description: Shanti compiler destroy unnamed objects later than others, which caused some reference counting test fail. Revised the test so that destructors are called at the same time, regardless the differences of compiler implementation. Revised some constructors, close, operator=, and destructors to make sure that all the object ids are handled properly. Platforms tested: Linux 2.4 (heping) SunOS 5.9 (shanti) HPUX 11.00 (kelgia) AIX 5.1 (copper)
* [svn-r12358] Purpose:Albert Cheng2006-05-194-4/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: The ${TR}, though avoid the error, is inconvenient. It is needed because configure.in use the char range in the style of 'a-z'. The other style of '[a-z]' is more commonly accepted by all tr but autoconf tends to strip away [], making the syntax rather clumsy. Solution: Learned from autoconf that it avoids the use of character range by just spell all the letters out. Changed our tr commands to use those variables defined by autoconf. Also removed the definition of ${TR} since it will cause inconsistancy when autoconf also use plain 'tr' in its generated code. The Makefile.in are changed because the elimination of ${TR} from configure triggered its removal from all Makefil.in. That is okay because ${TR} is not used at all in Makefile. Platforms tested: h5committested. (sol failed to connected). also tested in shanti using both /usr/ucb/tr and /bin/tr (the bad one before.) Misc. update: Updated both INSTALL and RELEASE files.
* [svn-r12345] Purpose: Codes for backward compatibility.Raymond Lu2006-05-122-4/+4
| | | | | | | | | | Description: Function prototype H5E_walk_t and structure H5E_error_t wasn't backward compatible. Solution: Make them compatible with v1.6 and provide new definitions of H5E_walk_stack_t and H5E_error_stack_t. Platforms tested: fuss and h5committest.
* [svn-r12326] Elena Pourmal2006-05-031-1/+1
| | | | | | | | | | | | | | | | Purpose: Bug fix for VMS Description: I am not sure why I didn't see this bug before ;-O. H5_HAVE_FILE_VERSIONS macro was added (by me) to the wrong place causing test program to get creation property list from a non-existing file object. As a result test program failed with access violation error. Solution: Fixed. Platforms tested: VMS server and copper (just in case) Misc. update:
* [svn-r12296] Purpose: MaintenanceBinh-Minh Ribler2006-04-252-33/+33
| | | | | | | | | | | Description: dsets.cpp: added a missing PASSED call to line up output better. tattr.cpp: casted parameters to verify_val properly to fix compilation errors on Windows, introduced from the previous checkin. Platforms tested: Linux 2.4 (heping) - very minor Windows XP
* [svn-r12295] Purpose:James Laird2006-04-214-12/+12
| | | | | | | | | | | | | | | | | | | Several bug fixes Description: Added config file for Cray X1 (previous file was misnamed) Simplified some code in hyperslab.c test that seemed to have been confusing compiler on Cray X1. Fixed typo in config/commence.am Cleaned up hl/src/Makefile.am Solution: All four fixes should be straightforward. The failure on Cray was very difficult to debug, but involved arithmetic errors. This change seems to fix it. Platforms tested: heping, copper, sol, some Cray X1 (more testing when system comes back up)
* [svn-r12286] Purpose: Fix bugBinh-Minh Ribler2006-04-201-2/+2
| | | | | | | | | | | | | | | | | Description: The file size test in C++ library failed on Copper because the value returned by h5_get_file_size was intepreted incorrectly due to different interger sizes. Solution: H5private.h: Added check to use stat64 and off64_t where appropriate. h5test.c and h5test.h: used h5_stat_size_t in place of off_t. tattr.cpp: used h5_stat_size_t in place of off_t. Platforms tested: Linux 2.4 (heping) AIX 5.1 (copper) SunOS 5.8 64-bit (sol) - still on going
* [svn-r12256] Purpose: Bug fixElena Pourmal2006-04-151-5/+1
| | | | | | | | | | | | | | Description: "using std::count" statement caused the problems on copper and kelgia Solution: I believe this statement is not needed at all (will verify with more daily tests and Binh-Minh). Removed. Platforms tested: heping, mir with Intel compiler, copper with -q64, shanti (there is a known failure in tatrr test) Misc. update:
* [svn-r12254] Purpose:Quincey Koziol2006-04-141-7/+7
| | | | | | | | | | | | | | Anti-feature Description: Revert changes to H5G_stat_t struct, to make it compatible with the 1.6.x branch again. The information that was added to the H5G_stat_t struct will be reported through other API routines. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++ Linux 2.4/64 (mir) w/C++ & Fortran Solaris 2.9 (shanti)
* [svn-r12253] Purpose: MaintenanceElena Pourmal2006-04-141-2/+2
| | | | | | | | | | | | | Description: Brought VMS changes back. My previous note about using std::count; should be in this log. C++ on VMS doesn't support "using std::count" Solution: IFDEF'ed with H5_VMS (until Binh-Minh has a chance to look into it and propose a different solution) Platforms tested: VMS server, heping Misc. update:
* [svn-r12252] Purpose: MaintenanceElena Pourmal2006-04-142-6/+7
| | | | | | | | | | | | | | | | Description: Brought VMS changes back (very minor): In tfile.cpp file some tests for open and creation should fail on UNIX, but this is not true on VMS since it has versioning of the files. In dsets.cpp std::count was used, but it is not available on VMS; also VMS didn't like "bogus" name for the filter function. Solution: Used H5_HAVE_FILE_VERSIONS and H5_VMS variables to control the tests; replaced "bogus" function with "filter_bogus" function Platforms tested: VMS server, heping Misc. update:
* [svn-r12229] Purpose:Pedro Vicente Nunes2006-04-126-8/+19
| | | | | | | | | | | | | | | | | | | | | new feature Description: 1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library 2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in) 3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h Solution: Platforms tested: linux 32, 64 AIX solaris with fortran and c++ (one packet table example fails) Misc. update:
* [svn-r12216] Purpose:Quincey Koziol2006-04-102-0/+32
| | | | | | | | | | | | | | | | | Code cleanup Description: Clean up some runtime errors from unsupported C99 types on Solaris 2.9 by wrapping them with ifdef's. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 32-bit (heping) Linux 2.4 64-bit (mir) Solaris 2.9 (shanti) Misc. update:
* [svn-r12202] Purpose: MaintenanceBinh-Minh Ribler2006-04-056-59/+54
| | | | | | | | | | | | Description: Changed to alias string instead of std, i.e. H5std_string instead of H5std, because the old way wasn't working when std didn't exist. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) HPUX 11.00 (kelgia) - this was the problematic platform but I wasn't able to test before.
* [svn-r12201] Purpose: MaintenanceBinh-Minh Ribler2006-04-057-25/+18
| | | | | | | | | | | | Description: Changed to alias string instead of std, i.e. H5std_string instead of H5std, because the old way wasn't working when std didn't exist. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) HPUX 11.00 (kelgia) - this was the problematic platform but I wasn't able to test before.
* [svn-r12200] Purpose: MaintenanceBinh-Minh Ribler2006-04-0540-251/+251
| | | | | | | | | | | | Description: Changed to alias string instead of std, i.e. H5std_string instead of H5std, because the old way wasn't working when std didn't exist. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) HPUX 11.00 (kelgia) - this was the problematic platform but I wasn't able to test before.
* [svn-r12192] Purpose: MaintenanceBinh-Minh Ribler2006-04-021-1/+1
| | | | | | | | | | Description: Corrected syntax for aliasing H5_std in the case of no std. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) Still couldn't test on kelgia; I'll check daily test tomorrow.
* [svn-r12185] Purpose: Code cleanupBinh-Minh Ribler2006-03-3125-55/+0
| | | | | | | | Description: Removed an empty #ifdef block that was left by mistake. Platforms tested: Linux 2.4 (heping) - very minor
* [svn-r12180] Purpose: MaintenanceBinh-Minh Ribler2006-03-3064-372/+287
| | | | | | | | | | | Description: Added alias H5_std so either the global or std namespace can be used, depending on H5_NO_STD. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) AIX 5.1 (copper)
* [svn-r12149] Purpose:James Laird2006-03-234-28/+4
| | | | | | | | | | | | | | | | Bug fix Description: Previous checkin did a bad thing; 'make clean' failed in example directories. Solution: Fixed commence.am so that examples no longer break, and fixed a mistake in conclude.am. Platforms tested: heping (minor makefile change) Misc. update:
* [svn-r12143] Purpose:James Laird2006-03-235-8/+34
| | | | | | | | | | | | | | Bug fix Description: make check-clean didn't clean results of example tests Solution: Fixed Makefiles so that check-clean recurses into example directories. Also a little Makefile cleanup. Platforms tested: mir, modi4, heping, copper
* [svn-r12074] Purpose: Typo fixElena Pourmal2006-03-101-1/+1
| | | | | | | | | | | Description: There was no macro name in ifdef statement (it was commented out ;-)) Solution: Fixed the typo Platforms tested: tested on heping with g++ Misc. update:
* [svn-r12052] Purpose: VMS portElena Pourmal2006-03-091-3/+12
| | | | | | | | | | | Description: insert method didn't work for VMS. Solution: Used append methos to form the string; this may become the change for all platforms after more testing Platforms tested: heping, VMS server Misc. update:
* [svn-r11937] Purpose:Albert Cheng2006-02-151-1/+1
| | | | | | | | | | | | | New feature. Description: Added the feature to make a release tarball for the documents tree too. Platforms tested: Feature code was created by James. I just did some touch up and tested it by hand in heping. I am checking it in while he is absent. Misc. update:
* [svn-r11883] Purpose: Fixed bugBinh-Minh Ribler2006-01-181-2/+0
| | | | | | | | | | Description: Removed the call to h5_test from dsets.cpp, since resetting the library made the C++ global constants become invalid. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol)
* [svn-r11845] Purpose: Adding another wrapper/Fixing typosBinh-Minh Ribler2005-12-293-3/+25
| | | | | | | | | | | Description: Added missing member function H5File::flush Fixed parameters passed to H5Awrite Other typos Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol)
* [svn-r11780] Purpose:James Laird2005-12-092-94/+45
| | | | | | | | | | | | | | | | | Added high-level example directories Description: Refactored common code out of examples Makefiles.am, added high-level example directories, added packet table examples. Solution: Examples now draw from a common config/examples.am file, which contains rules for installing, uninstalling, and cleaning examples. High-level example directories are mostly empty, except for the C and C++ packet table tests. Platforms tested: mir, sleipnir, copper, shanti
* [svn-r11771] Purpose:Quincey Koziol2005-12-081-1/+0
| | | | | | | | | | | | Code cleanup Description: Fix a bunch of warnings flagged by Windows compilers. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11763] Purpose: Adding testsBinh-Minh Ribler2005-12-051-17/+154
| | | | | | | | | | Description: Added tests for openFile and new getObjinfo. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) HPUX 11.00 (kelgia)
* [svn-r11762] Purpose: Adding more wrappersBinh-Minh Ribler2005-12-057-15/+112
| | | | | | | | | | | | | | | | | Description: Added member function H5File::openFile and overloaded for convenience. Added overloaded getObjinfo to skip the middle parameter. Changed StrType(const size_t& size); to StrType(const int dummy, const size_t& size); because the first one clashed with StrType(const hid_t existing_id); Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) HPUX 11.00 (kelgia)
* [svn-r11757] Purpose: Example code improvementBinh-Minh Ribler2005-12-037-25/+56
| | | | | | | | | | Description: Improved the use of std members. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) Linux 2.4 w/PGI (colonelk)
* [svn-r11756] Purpose: Test improvementBinh-Minh Ribler2005-12-035-4/+42
| | | | | | | | | | Description: Improved the use of std members. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) Linux 2.4 w/PGI (colonelk)
* [svn-r11755] Purpose: Code improvementBinh-Minh Ribler2005-12-0345-574/+369
| | | | | | | | | | | | | | | | | Description: There was a workaround for predefined types, in the C++ library, implemented when the C++ library was handling the reference counting of the object ids on its own. Currently, the C++ library is using the available APIs from the C library for that purpose, and there were bugs reported involving that part of the C++ library. So, I decided to remove the workaround completely. Also, improved the use of std members. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) Linux 2.4 w/PGI (colonelk)
* [svn-r11741] Purpose:James Laird2005-11-184-24/+64
| | | | | | | | | | | | | | | | | Bug fix Description: Fortran type generation was broken in two ways. Fixed both. Solution: Firstly, there were a couple of path problems. Fixed a typo and specified the full path of a file. Secondly, the dependencies weren't right when building with HDF5-specific commands (make lib, make check-s, etc.). Tweaked dependencies to fix the problem. Platforms tested: mir, modi4, sleipnir
* [svn-r11738] Purpose:James Laird2005-11-184-0/+16
| | | | | | | | | | | | | | | | | | | Configure feature Description: Added 'make trace' target. Solution: Added tracing to 1.7. This was done automatically in 1.6, but left out of 1.7 until now (oops!). Tracing in 1.7 only happens manually, when the user types 'make trace.' Tracing automatically requires more framework than it's worth. I also fixed a couple of tracing bugs and ran trace. Platforms tested: mir, sleipnir, modi4 Misc. update:
* [svn-r11737] Purpose:James Laird2005-11-174-0/+32
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix Description: Before this checkin, 'gmake check-s' would fail if there was a file in the current directory named 'check-s'. This is fixed under gmake (not sure how to fix for other makes). Solution: check, progs, install, etc. are what gmake calls "phony" targets, which means that no file should be created. These targets can be specified by a line of the form .PHONY: check progs install ... Automake adds this line for targets it knows about, but HDF5 has a lot of custom rules. This checkin adds a .PHONY line for those rules. I believe that only gmake recognizes the .PHONY line (at least, pmake doesn't seem to), but a partial solution is better than none. This error should occur very rarely anyway (the user has to manually create files with names like 'build-check-s' or '_test'). Platforms tested: mir, sleipnir, modi4
* [svn-r11655] Purpose:James Laird2005-11-011-1/+7
| | | | | | | | | | | | | Bug fix Description: Fixed a bug when using h5fc and h5c++ with static libraries. Added high-level C++ and Fortran libraries to h5c++ and h5fc. Solution: Platforms tested: mir, heping, shanti, sleipnir
* [svn-r11646] Purpose:James Laird2005-10-316-28/+127
| | | | | | | | | | | | | | | | | | Bug fix/feature Description: Added support for -shlib in h5fc and h5c++. Made check-install use -shlib when only shared libraries have been installed. Solution: h5fc and h5c++ didn't recognize -shlib. Stole code from h5cc to link against shared libraries. When static libraries are disabled, the examples Makefiles will automatically use the -shlib option to link against shared libraries. Thus, --disable-static and make check-install should work together. Platforms tested: heping(disable-static, enable-static, fortran, c++), modi4 (disable-static, fortran, c++, parallel, enable-static)
* [svn-r11619] Purpose:Quincey Koziol2005-10-293-1/+29
| | | | | | | | | | | Update copyrights. Description: Solution: This should address almost all of the "simple" cases in the repository. There's still work to do, but it's going to require actually thinking about the files in question instead of just copying & pasting.
* [svn-r11612] Purpose:James Laird2005-10-274-4/+4
| | | | | | | | | | | | | Bug fix Description: Failed parallel tests now cause make to exit with an error. Solution: Edited config/conclude.am to throw an error if parallel test programs fail. Platforms tested: heping, modi4
* [svn-r11602] Purpose:James Laird2005-10-244-12/+0
| | | | | | | | | | | | Bug fix Description: Removed detection of pdb from configure.in as a corollary to removal of pdb2hdf5 tool. Platforms tested: mir, modi4
* [svn-r11596] Purpose:Quincey Koziol2005-10-221-1/+1
| | | | | | | | | | | Update copyrights Description: Updated copyright information in hdf5/bin and top-level and added some more files to be skipped to the chkcopyright config file. Platforms tested: None - just eyeballed
* [svn-r11573] Purpose:James Laird2005-10-174-0/+4
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Changed configure.in to use an environment variable TR to set the path to the tr utility. Solution: There are two kind of tr on Solaris with slightly different syntax. HDF5's configure relies on the "standard" tr. Traditionally, HDF5ers have needed to make sure that the "right" tr was found before the wrong one in their path; now they can use an environment variable. Platforms tested: mir, shanti, sol Misc. update: Forgot to update release notes. Off to do that now.
* [svn-r11566] Purpose:James Laird2005-10-144-0/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | Makefile bug fix Description: Previously, automake didn't output rules to build perform/mpi-perf or the test/gen_* programs. Now these can be built by typing 'make mpi-perf' (or 'make foo') or by configuring with --enable-build-all. Solution: Automake doesn't like having rules for programs it doesn't build. Tricked it by having these programs built "sometimes"--whenever the user enables --build-all. This should be used mostly for testing and to ensure that these helper programs compile. ***IMPORTANT*** These programs do *not* currently compile. When --enable-build-all is used (not the default), gen_new_fill fails because it uses an old API. This is an existing "bug" that has simply been exposed by this checkin. Platforms tested: sleipnir, modi4, sol Misc. update:
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