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* [svn-r11655] Purpose:James Laird2005-11-011-1/+7
| | | | | | | | | | | | | Bug fix Description: Fixed a bug when using h5fc and h5c++ with static libraries. Added high-level C++ and Fortran libraries to h5c++ and h5fc. Solution: Platforms tested: mir, heping, shanti, sleipnir
* [svn-r11646] Purpose:James Laird2005-10-316-28/+127
| | | | | | | | | | | | | | | | | | Bug fix/feature Description: Added support for -shlib in h5fc and h5c++. Made check-install use -shlib when only shared libraries have been installed. Solution: h5fc and h5c++ didn't recognize -shlib. Stole code from h5cc to link against shared libraries. When static libraries are disabled, the examples Makefiles will automatically use the -shlib option to link against shared libraries. Thus, --disable-static and make check-install should work together. Platforms tested: heping(disable-static, enable-static, fortran, c++), modi4 (disable-static, fortran, c++, parallel, enable-static)
* [svn-r11619] Purpose:Quincey Koziol2005-10-293-1/+29
| | | | | | | | | | | Update copyrights. Description: Solution: This should address almost all of the "simple" cases in the repository. There's still work to do, but it's going to require actually thinking about the files in question instead of just copying & pasting.
* [svn-r11612] Purpose:James Laird2005-10-274-4/+4
| | | | | | | | | | | | | Bug fix Description: Failed parallel tests now cause make to exit with an error. Solution: Edited config/conclude.am to throw an error if parallel test programs fail. Platforms tested: heping, modi4
* [svn-r11602] Purpose:James Laird2005-10-244-12/+0
| | | | | | | | | | | | Bug fix Description: Removed detection of pdb from configure.in as a corollary to removal of pdb2hdf5 tool. Platforms tested: mir, modi4
* [svn-r11596] Purpose:Quincey Koziol2005-10-221-1/+1
| | | | | | | | | | | Update copyrights Description: Updated copyright information in hdf5/bin and top-level and added some more files to be skipped to the chkcopyright config file. Platforms tested: None - just eyeballed
* [svn-r11573] Purpose:James Laird2005-10-174-0/+4
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Changed configure.in to use an environment variable TR to set the path to the tr utility. Solution: There are two kind of tr on Solaris with slightly different syntax. HDF5's configure relies on the "standard" tr. Traditionally, HDF5ers have needed to make sure that the "right" tr was found before the wrong one in their path; now they can use an environment variable. Platforms tested: mir, shanti, sol Misc. update: Forgot to update release notes. Off to do that now.
* [svn-r11566] Purpose:James Laird2005-10-144-0/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | Makefile bug fix Description: Previously, automake didn't output rules to build perform/mpi-perf or the test/gen_* programs. Now these can be built by typing 'make mpi-perf' (or 'make foo') or by configuring with --enable-build-all. Solution: Automake doesn't like having rules for programs it doesn't build. Tricked it by having these programs built "sometimes"--whenever the user enables --build-all. This should be used mostly for testing and to ensure that these helper programs compile. ***IMPORTANT*** These programs do *not* currently compile. When --enable-build-all is used (not the default), gen_new_fill fails because it uses an old API. This is an existing "bug" that has simply been exposed by this checkin. Platforms tested: sleipnir, modi4, sol Misc. update:
* [svn-r11555] Purpose: Code cleanupBinh-Minh Ribler2005-10-127-30/+9
| | | | | | | | | | Description: Removed obsolete function CompType::getMemberDims. Fixed some typos. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol)
* [svn-r11517] Purpose: Fixed commentsBinh-Minh Ribler2005-10-101-4/+4
| | | | | | | | | Description: Fixed the description of two parameters that were swapped by mistake. Platforms tested: Linux 2.4 (heping) - very minor
* [svn-r11487] Purpose:Quincey Koziol2005-10-0172-852/+864
| | | | | | | | | | | Code cleanup Description: Tweak copyright on C++ source files to reduce whining by copyright checking script. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++
* [svn-r11478] Purpose:Albert Cheng2005-09-294-32/+28
| | | | | | | | | | | | | | | | bug fix. Description: When a parallel test script test fails, make would continue because the way it was setup inside a for loop. Fixed it by issuing an exit 1 inside the loop. There was also a typo error in the newer command comparision that it must be $${chkname} in order to be valid. Also, the test script itself was not checked in the newer lists. All fixed. Platforms tested: h5committested and also hand tested in heping pp mode.
* [svn-r11446] Purpose:James Laird2005-09-204-8/+12
| | | | | | | | | | | Bug fix Description: Massaged the newer script and config/conclude.am to make SX6 happy. Platforms tested: SX6, sol, mir
* [svn-r11436] Purpose: Change the appearance of the C++ API Reference ManualBinh-Minh Ribler2005-09-191-58/+95
| | | | | | | | | | | | | | | | | Description: I couldn't get the HDF logo to appear, when the location for the html files generated by doxygen is arbitrary. This arbitrary directory doesn't contain the logo image file, which would be placed in a planned directory. The logo is removed now, but the image file is kept in the CVS under hdf5/c++/src, just in case when I can find a solution. Platforms tested: Linux 2.4 (heping) Windows XP Misc. update:
* [svn-r11431] Purpose:Albert Cheng2005-09-184-8/+12
| | | | | | | | | | | | | | | | | New feature. Description: Added the time command to the make check target to report time usage of the execute of each test and test scripts. This gives us some idea how long each test takes and some vague idea it is compute bound or not. powerpc-ibm-aix5.x: Change $RUNPARALLEL default setting to allow it being invoked by the time command. Platforms tested: h5committested.
* [svn-r11421] Purpose:James Laird2005-09-164-16/+44
| | | | | | | | | | | | | | | Feature Description: Added H5_CFLAGS, etc. to 1.7 branch. Now compilation flags can be put in H5_*FLAGS and they'll be used when building hdf5 but not in h5cc. Platforms tested: mir, sleipnir, modi4 Misc. update:
* [svn-r11420] Purpose:James Laird2005-09-166-22/+48
| | | | | | | | | | | | | | | | | Bug fix Description: Disabled C++ shared libraries for Sun Workshop compiler. Solution: This bug only seems to happen when using the -xarch=v9 flag to compile in 64-bit mode, but disabling shared libraries entirely for this compiler is an easier fix (I don't know how to detect 64 bit mode from the command line). The framework for disabling shared libraries for other C++ compilers is in place. Platforms tested: sol, mir, sleipnir, modi4
* [svn-r11418] Purpose:James Laird2005-09-154-0/+8
| | | | | | | | | | | | | | | | Bug fix/feature Description: Disabled shared libraries for a number of Fortran compilers that don't support them. This allows other compilers to support shared Fortran libraries. Solution: Added a conditional, SHARED_FORTRAN_CONDITIONAL, which is true if Fortran supports shared libraries. It is set in configure.in. Platforms tested: mir, sleipnir, colonelk, heping
* [svn-r11411] Purpose:James Laird2005-09-134-16/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix Description: Building with --disable-static seems to have been broken on several platforms. Fixed this. Configure will now disable shared libraries automatically when using pgf90 or when building on Cygwin. Solution: To avoid errors when using shared libraries with pgf90 (which I had not realized were compiler-specific), I had manually set convenience libraries to use the -static linking flag. Apparently, this is not necessary, and caused these libraries to be created as empty archives when --disable-static was used. Also, some libraries were including other libraries, which was not necessary. I also fixed code in configure.in to correctly detect whether shared or static libraries are enabled, and moved code that disables shared libraries to before libtool is created (rather than editing libtool after the fact). Despite repeated warnings that only one shared library can be linked at a time, I have yet to have shared libraries break the linking of tests on any system. We'll see if the Daily Tests turn up anything. Platforms tested: mir (fortran, C++), sleipnir (C++), modi4 (fortran, C++, parallel), sol (fortran, C++), cygwin
* [svn-r11331] Purpose:James Laird2005-09-012-6/+6
| | | | | | | | | | Bug fix Description: Replaced 8 spaces with tabs in c++/examples/Makefile.am. Platforms tested: mir, sleipnir
* [svn-r11330] Purpose:James Laird2005-08-314-22/+16
| | | | | | | | | | | | | | | | | Bug fix Description: Errors on sol may have been due to "make clean" being run both manually and by automake. Removed the manual run. Also cleaned c++/examples/ii_files directory created by some compilers (e.g., on modi4). Solution: This does mean that examples directories will not be cleaned by 'make clean'. Platforms tested: sol, mir, heping, modi4
* [svn-r11323] Purpose:Albert Cheng2005-08-314-4/+8
| | | | | | | | | | | | | | | | tidy up. Description: MPE option created *.clog file whenever it is executed in MPI. The cleanup of *.clog files were done in individual Makefile.in. Often, it is forgotten. Solution: Moved the cleaning of *.clog files to CHECK_CLEANFILES in commence.am so that it is applied whenever check-clean is called. Platforms tested: heping pp using MPE.
* [svn-r11319] Purpose:James Laird2005-08-304-4/+4
| | | | | | | | | | | | | | | | | | | | | | | Bug fixes Description: This checkin fixes an occasional error on kelgia on sol during distclean. It also causes test scripts to depend properly on the programs they're supposed to be testing. Solution: The kelgia bug was due to some files being cleaned by automake and manually. Removed the manual cleaning in src/Makefile.am. Test script dependencies now need to be specified manually, since the makefile can't guess what they test from their name. Currently all test scripts in a given directory have a single list of dependencies--this was easy and seems to be sufficient. These dependencies are listed in the SCRIPT_DEPEND variable in the Makefile.am. Platforms tested: heping, mir, modi4, sol Misc. update:
* [svn-r11303] Purpose:Albert Cheng2005-08-264-98/+60
| | | | | | | | | | | | minor tidy up. Description: Changed both test programs and test scripts to use the same suffixes (.chkexe and .chklog). Changed from .log to .chklog to avoid running into potential conflicts by other "things" (e.g., config.log). Tested: Heping.
* [svn-r11274] Purpose: Additional code improvementBinh-Minh Ribler2005-08-196-0/+24
| | | | | | | | | Description: Forgot to modify the examples for the "using" declaration changes in the library. Added "using" declaration appropriately. Platforms tested: Linux 2.4 (heping) - very minor
* [svn-r11264] Purpose: Additional code improvementBinh-Minh Ribler2005-08-189-1/+30
| | | | | | | | | | Description: Used "using" declaration and directive better to reduce namespace pollution. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol)
* [svn-r11245] Purpose:Quincey Koziol2005-08-1364-1005/+1005
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11213] Purpose:Albert Cheng2005-08-084-28/+8
| | | | | | | | | | | | | | | | | | | Bug fix and improvement. Description: The test output were not displayed for parallel tests. The serial tests output were always displayed whether the test was actually ran this time or not. Solution: Moved the display of test output inside the target where the actual tests are run. Platforms tested: Tested in heping using pp and fortran.
* [svn-r11210] Purpose: Code improvementBinh-Minh Ribler2005-08-0811-41/+63
| | | | | | | | | Description: Made use of IdComponent::inMemFunc in more classes. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol)
* [svn-r11207] Purpose:Albert Cheng2005-08-084-220/+252
| | | | | | | | | | | | | | | | | | | | | Bug fix and code minor cleanup. Description: The attempt to redirect stderr together to the log files were done in the wrong order such that stderr output goes to where stdout WAS. Fixed that. Code minor cleanup--use shell variables to hold the name of the log file and the test instead of generating them repeatedly. This makes easier code reading, less crowded and avoid typos. Only conclude.in is changed. The Makefile.in changes are all derived from automake. Platforms tested: h5committested. Misc. update:
* [svn-r11206] Purpose: Additional wrapper/Code improvementBinh-Minh Ribler2005-08-0826-182/+606
| | | | | | | | | | | | | | | | Description: Added wrapper for H5Iget_type. Added try/catch to many APIs that call private functions so that more specific information can be provided at failure. Added IdComponent::inMemFunc to help providing specific info. Added const to parameters of several functions that missed that. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) AIX 5.1 (copper) IRIX64 with -n32 (modi4) HPUX 11.00 (kelgia)
* [svn-r11200] Purpose: Code improvementBinh-Minh Ribler2005-08-042-35/+24
| | | | | | | | | | | | | | Description: Changed CompType::getMemberClass to use H5Tget_member_class instead of going around unneccesarily. Changed "int member_num" to "unsigned member_num" of several member functions of CompType, per the C library change. Platforms tested: Linux 2.4 (heping) Linux 2.4 w/PGI (colonelk) AIX 5.1 (copper)
* [svn-r11185] Purpose:James Laird2005-08-025-17/+24
| | | | | | | | | | | | | | | Makefile feature Description: 'make check-clean' now cleans *.h5 files created by tests as well as .log and .chkexe files. Solution: check-clean is now a separate target in its own right, which cleans less than mostlyclean (check-clean < mostlyclean < clean < distclean). Platforms tested: mir, heping, modi4 (serial and parallel)
* [svn-r11179] Purpose:James Laird2005-08-018-44/+73
| | | | | | | | | | | | | | | | | | | Feature: check-clean target Description: 'make check-clean' cleans up output files from tests. Solution: Tests create foo.chkexe and foo.log files. Scripts create foo.chksh and foo.logsh files. 'make check-clean' will clean these files up so that the tests can be re-run. Also suppressed some not-very-useful output of Makefiles when it would echo commands. Platforms tested: mir, sleipnir, modi4 Misc. update:
* [svn-r11152] Purpose: Removed some compiler warningsBinh-Minh Ribler2005-07-252-5/+2
| | | | | | | | | | Description: Removed defined but unused variables. Platforms tested: Linux 2.4 (heping) IRIX64 with -n32 (modi4) Linux 2.4 w/PGI (colonelk)
* [svn-r11151] Purpose: Fix bugzilla #407 and #408Binh-Minh Ribler2005-07-2514-28/+65
| | | | | | | | | | | | | | | | | | | | Description: PropList::copyProp has incorrect prototype; although it works, it does cause users inconvenience. Solution: Added another overloaded function with correct prototype. The old version will be removed in a future release. In the meantime, "Obsolete" will be displayed in its RM page. Also, changed several checks on the returned value of a C API from non-positive to negative because id = 0 is no longer significant, now that the C++ reference counting had been removed. Platforms tested: Linux 2.4 (heping) IRIX64 with -n32 (modi4) Linux 2.4 w/PGI (colonelk)
* [svn-r11149] Purpose: Fix bugzilla #406Binh-Minh Ribler2005-07-248-41/+179
| | | | | | | | | | | | | | | | Description: Added these missing member functions: AbstractDs::getArrayType AbstractDs::getVarLenType CommonFG::openArrayType CommonFG::openVarLenType CompType::getMemberArrayType CompType::getMemberVarLenType Platforms tested: Linux 2.4 (heping) IRIX64 with -n32 (modi4) Linux 2.4 w/PGI (colonelk)
* [svn-r11144] Purpose:Quincey Koziol2005-07-231-0/+4
| | | | | | | | | | | New port Description: Elena asked me to check in her NEC SX-6 work, so here it is! :-) Platforms tested: FreeBSD 4.11 (sleipnir) NEC SX-6 (by Elena)
* [svn-r11095] Purpose:James Laird2005-07-216-69/+252
| | | | | | | | | | | | | | | | | | | | | | Configuration feature Description: Serial test output is now stored in log files and printed when all tests in a directory complete, or when a test fails. This should make test output more readable and useful. Also made changes to clean up ii_files directories that are created by some C++ compilers/linkers. Also fixed a few minor Makefile bugs. Solution: When serial tests run, their output is saved in *.log or *.logsh. While running, tests only print when they begin and when they complete; their more specific output (from the log file) is printed if the test fails or when all tests have completed. Comments welcome. Platforms tested: mir, modi4 (parallel and serial), copper, shanti
* [svn-r11083] Purpose:James Laird2005-07-182-2/+2
| | | | | | | | | | | | Bug fixes Description: A number of minor changes to Makefiles. Some files will now be cleaned properly, some comments are more informative, etc. Platforms tested: heping, mir, modi4
* [svn-r11060] Purpose: Fix bug (reported by user)Binh-Minh Ribler2005-07-1014-87/+173
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: The use of FileCreatPropList::DEFAULT sometimes caused failure in the reference counting area. This occurs to all the default property lists, which also include FileAccPropList::DEFAULT, DSetCreatPropList::DEFAULT, and DSetMemXferPropList::DEFAULT. H5P_DEFAULT was used to create these default prop lists and because its value is 0, the id of these prop lists are 0, which is rejected by the H5I functions during the reference counting. Solution: The main action to fix the above problem was to use H5P_FILE_CREATE H5P_FILE_ACCESS H5P_DATASET_CREATE H5P_DATASET_XFER to define the default property lists accordingly. Yet, when this fix was applied, some bug in reference counting was revealed. It appeared that some ids were not incremented but were passed in for decrementing. The following actions were then taken to fix and improve the current use of reference counting H5I functions. * added private func IdComponent::p_valid_id to verify that the id is a valid id and can be passed into an H5I function * used p_valid_id to validate an id before calling an H5I functions in the reference-counting member functions incRefCount, decRefCount, and getCounter * changed to use member function incRefCount, decRefCount, and getCounter instead of the C APIs H5Iinc_ref, H5Idec_ref, and H5Iget_ref throughout IdComponent. In addition, overloadings were added for incRefCount, decRefCount, and getCounter to take an id different than the id of the current instance; they can be convenient during debugging. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) AIX 5.1 (copper)
* [svn-r11042] Purpose:Quincey Koziol2005-07-074-28/+28
| | | | | | | | | | | | | | | | | | Bug fix Description: The ".chksh" file for a test script was being created in the "source" location rather than the build location. This can cause problems when multiple builds are running because "slower" machines will see the ".cshsh" file from faster machines and will not run the test script as they should. Solution: Use 'basename' command to strip off the path of the script and create the ".chksh" file in the build location. Platforms tested: FreeBSD 4.11 (sleipnir) h5committest
* [svn-r11034] Purpose:Albert Cheng2005-07-074-16/+8
| | | | | | | | | | | | | | | | | bug fix. Description: -nt is not a universal option for the test command in all platforms. The use of it in conclude.am cause some platforms to bark at the Makefile generated. Solution: Created a command script bin/newer which tests if file1 is newer than file2. Replace the "test file1 -nt file2" by "newer file1 file2". Platforms tested: Tested in sol.
* [svn-r11016] Purpose:James Laird2005-07-042-0/+8
| | | | | | | | | | | | | | | | Bug fix Description: Added dependencies to examples Makefiles so that examples can be run in parallel. Solution: The examples directories (for C, C++, and Fortran) all have some dependencies explicitly spelled out in their Makefiles.am. This is a good short-term solution, and should prevent errors in the Daily Tests. Platforms tested: mir, modi4 (parallel and sequential)
* [svn-r11013] Purpose:James Laird2005-07-014-28/+28
| | | | | | | | | | | | | | | | | | Bug fix Description: Fixed bugs that caused tests to be unable to find testhdf5.sh during daily tests, and another that broke sol and shanti. Solution: When tests are run, their path is ./$testname . When scripts are run, their path has no leading "./". Fixed. Sol and shanti don't recognize the -e option for test, but they do know -f. Fixed. Also modified release notes. Platforms tested: mir, shanti, heping
* [svn-r11008] Purpose:James Laird2005-06-305-354/+328
| | | | | | | | | | | | | | | | | | | | | | Feature: tests now use parallel make and only run once Description: When make is invoked in parallel (using the -j option), several tests will now be run simultaneously. This should speed up testing on a number of systems. When a test passes, it creates a foo.chkexe or foo.chksh file, which prevents the test from running again unless the test or library changes. Solution: Most of the changes live in config/conclude.am. Added *.chkexe and *.chksh files to the list of files to be cleaned at "make mostlyclean" time. Parallel tests still run one at a time, but use the same make instructions as serial tests. Platforms tested: mir, eirene, sleipnir, pommier, copper, modi4 (some errors occurred, probably due to the test being run before updating hdf5. Will re-run tests after checkin.)
* [svn-r10955] Purpose: Added more APIsBinh-Minh Ribler2005-06-192-11/+83
| | | | | | | | | | | | | Description: - Added another overloaded CommonFG::getComment so the user will not have to provide the comment's length. - Added wrappers for H5Gget_comment when the comment is to be removed, CommonFG::removeComment. - Corrected several 'delete' statements Platforms tested: Linux 2.4 (heping) AIX 5.1 (copper)
* [svn-r10953] Purpose: Updating C++ testsBinh-Minh Ribler2005-06-193-241/+224
| | | | | | | | | Description: Updated various comments/headers. Platforms tested: Linux 2.4 (heping) AIX 5.1 (copper)
* [svn-r10858] Purpose:Albert Cheng2005-06-044-16/+60
| | | | | | | | | | | bug fix. Description: The check-s and check-p targets are not recursively passes down. Make them so. Platforms tested: heping (serial and pp).
* [svn-r10849] Purpose:Albert Cheng2005-06-023-3/+9
| | | | | | | | | | | | | | | | | | bug fix Description: check-s and check-p were set as pre-requistics of test. They would get executed in parallel if parallel make is used. This could cause problems since serial tests are used to be executed before parallel tests. It is not known if it is always okay to run serial and parallel tests in simultantously. Solution: Change check-s and check-p as actions of the target test so that they get executed sequnentially. Platforms tested: heping PP.
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