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* Force lowercase Fortran module file names (#2891)Scot Breitenfeld2023-05-041-0/+6
| | | | | * fixed args in execvp for h5fuse * Force lowercase Fortran module file names for Cray compilers
* CMake: Let runtime checks through stdout only (#2666)Julien Schueller2023-04-111-12/+17
| | | | This avoids mixing emulators errors on stderr to configure results while cross-compiling with wine.
* Update CMake code to 3.18 minimum version (#2080)Allen Byrne2022-09-031-29/+9
| | | | | * Update CMake code to 3.18 minimum version * Updated release note
* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-071-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Fix Fortran REGEX and newlines (#1226)Allen Byrne2021-11-291-4/+4
| | | | | | | * Fix order of fortran define * fix typo * Fix REGEX and newlines
* Github #969 Use stdout instead of file for configure check (#1089)Allen Byrne2021-11-181-49/+22
| | | | | | | | | | | | | * Use stdout instead of file for configure check * Make change requested by #1157 * Change fortran to use stderr for configure * Correct typo * remove obsolete file check * Fortran statement fix
* Rework Fortran configure to allow multiple CMake reruns (#721)Allen Byrne2021-06-071-133/+14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace * GH #359 implement and fix tools 1.6 API usage * remove excessive comments * Flip inits to correct ifdef section * rework ifdef to be simpler * format issue * Reformat ifdef inits * remove static attribute * format compliance * Update names * Revert because logic relies on float not being int * Changes noticed from creating merge of #412 * Double underscore change * Correct compiler version variable used * Remove header guard underscores * Whitespace cleanup * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * correct window os name * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * HDFFV-11113 long double in tools * HDFFV-11113 add note * Disable long double tests for now * HDFFV-11228 remove arbitrary CMake warning groups. * Make each flag a string * Some Javadoc warning fixes * Updated javadoc fixes * # WARNING: head commit changed in the meantime HDFFV-11229 Fix long double usage in tools and java Changed h5dump and h5ls to just print 128-bit for long double type. Added test and file for dataset and attributes with all three float types. * Committing clang-format changes * HDFFV-11229 Add release note * HDFFV-11229 windows testfile needed * fix typo * Remove non supported message text * HDFFV-11229 - change ldouble test to check both native and general * HDFFV-11229 add second file compare * HDFFV-11229 fix reference file * HDFFV-11229 autotools check two refs * HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output * Committing clang-format changes * Update release note * Update attribute type of ref file * Change source of ninja for macs * try port instead of brew * Recommended is to use brew. * Undo non long double changes * remove unneeded file * Fix perl and doxygen CMake code * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument * Add stamp files to BYPRODUCTS * Only one copy of file exists * Fix custom cmmand depends targets * Fix fortran custom command DEPENDS * Add LD_LIBRARY_PATH to tests * Add custom target for DEPENDS * Add h5detect conditionaly to generated target DEPENDS * Correct DEPENDS targets * Parallel builds need the mpi compiler for pkgconfig scripts. * install only if MPI build * Fortran target depends * Remove incorrect source attribute * doxygen adjustments * doxygen build updates * Correct version * Correct function version - function has been merged to 1.12 * Correct version string for map functions * Cleanup warnings for tools debug builds * TRILAB-227 - fix indexing for h5diff selections * Correct location of pos to index function call * TRILAB-227 Enable test * Quote subset args * Use MATCHES because of AppleClang * if blocks needed for build modes * Update list of DT platforms * VS2019 correctly displays float values * revert VS2019 change * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Java reference functions updated enabled fortran in cmake gcc action yaml file java reference test changed to correctly test refs jni reference functions that create ids changed to use jni id logging * Correct BYPRODUCTS argument * Correct more genereated files BYPRODUCTS * BYPRODUCTS must have unique locations * Fix typo * Fix fortran configure checks * Rework H5_PAC_C_MAX_REAL_PRECISION setting logic * Add note about fortran configure change * Adds a quick for for some egregious chunk_info badness (#722) * Fixes issue with ccmake that prevents building Fortran (#723) ccmake runs iteratively, and the check_fortran_source_runs macros were clobbering a single output file that did not get updated on further configure iterations * Fix conflicts with merge * Move MAX_PRECISION back to HDF5UseFortran.cmake * Use STREQUAL to test macro argument * Move C language test to ConfigureChecks from HDF5UseFortran Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* Fixes issue with ccmake that prevents building Fortran (#723)Dana Robinson2021-06-041-69/+7
| | | | | ccmake runs iteratively, and the check_fortran_source_runs macros were clobbering a single output file that did not get updated on further configure iterations
* Update license url part2 (#333)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Reclassify CMake messages - HDFFV-11144 (#253)Allen Byrne2021-01-131-13/+31
| | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages
* Tools refactorAllen Byrne2020-07-151-1/+1
| | | | | | Move error_stack setup to tools library Add structure for h5dump properties Eliminate duplicated h5diff functions Use properties structure in place of argument lists.
* Fix Fortran macro use and jni commentAllen Byrne2020-02-251-8/+2
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* TRILAB-142 Change minimum CMake version to 3.12Allen Byrne2020-02-211-62/+158
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* HDFFV-10529 Update CMake tests to use test fixturesAllen Byrne2019-07-231-1/+2
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* Correct message command syntaxAllen Byrne2019-05-171-5/+5
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* Use correct variable nameAllen Byrne2019-02-141-1/+1
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* Cleanup variable namesAllen Byrne2019-01-221-2/+2
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* HDFFV-10546 refactor variable nameAllen Byrne2019-01-021-13/+3
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* TRILABS-34 improve cross compile with emulatorAllen Byrne2018-10-041-7/+0
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* TRILABS-34 Cleanup try_runAllen Byrne2018-10-041-7/+1
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* TRILABS-34 avoid try-run output captureAllen Byrne2018-10-041-40/+42
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* TRILABS-21 Add intel compiler supportAllen Byrne2018-10-041-1/+5
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* TRILAB-21 Intel flagsAllen Byrne2018-10-021-36/+36
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* HDFFV-10508 more config fixesAllen Byrne2018-07-301-1/+1
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* HDFFV-10508 correct sizeofAllen Byrne2018-07-301-4/+4
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* HDFFV-10508 pubconf changes foundAllen Byrne2018-07-301-3/+3
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* TRILABS-20 Fix fortran configure during fix of CXX configureAllen Byrne2018-04-241-33/+34
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-0/+11
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Lowercase math and set CMake commandsAllen Byrne2017-03-021-3/+3
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* Update CMake files and formattingAllen Byrne2017-03-011-14/+14
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* Update cmake min version and cmake command conventionAllen Byrne2017-01-101-130/+129
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* fixed missing closing bracketM. Scot Breitenfeld2016-09-291-1/+1
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* Added number of integer KINDs found to the header files.M. Scot Breitenfeld2016-09-261-0/+3
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* [svn-r30196] HDFFV-9467: Use the same test programs for CMake and autotoolsScot Breitenfeld2016-07-181-92/+17
| | | | Tested: jelly (gnu)
* [svn-r30064] Changed configure's behavior from a warning to an error Scot Breitenfeld2016-06-091-0/+41
| | | | | | | if the available Fortran KINDs, or Fortran decimal precision, can not be determined. (MSB, HDFFV-9922)
* [svn-r29928] HDFFV-9912:Scot Breitenfeld2016-05-121-44/+53
| | | | | | | | | | configure fails to detect valid KINDs on FreeBSD Added the exponential option to SELECTED_REAL_KIND to distinguish KINDs of same precision. Tested: FredBSD, jam, platypus.
* [svn-r28131] Cleanup cmake output of HDF5UseFortranJerome Soumagne2015-10-191-5/+5
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* [svn-r27570] Fixed issue with REAL max detection.Scot Breitenfeld2015-08-241-11/+13
| | | | tested: h5committest
* [svn-r27557] Added build_mod directory and updated the C try_run macro to ↵Scot Breitenfeld2015-08-241-19/+11
| | | | not check for definitions and does not return unused arguments.
* [svn-r27524] Added test to not remove double precision from valid KINDS if ↵Scot Breitenfeld2015-08-191-2/+6
| | | | | | it is the largest compatible REAL with C. Tested: h5committest.
* [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk.Scot Breitenfeld2015-08-111-0/+491
| | | | Tested: h5committest --PASSED--
* [svn-r27489] reverted merge of branchScot Breitenfeld2015-08-111-491/+0
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* [svn-r27488] Merged the F2003_v1.10 branch to the trunk.Scot Breitenfeld2015-08-111-0/+491
|\ | | | | | | Tested: h5committest
| * [svn-r27350] updated missing cmake definesScot Breitenfeld2015-07-081-30/+48
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| * [svn-r27337] cmake configure test for FortranScot Breitenfeld2015-07-051-0/+461
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* [svn-r25188] Implement change to cmake_ext_mod config folderAllen Byrne2014-05-141-139/+0
| | | | Tested: local linux
* [svn-r24824] HDFFV-8700 -Allen Byrne2014-03-181-5/+5
| | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
* [svn-r24781] HDFFV-8700 -Allen Byrne2014-03-111-29/+29
| | | | | | | KitWare recommendations: Change CMake commands to lower case. Remove INCLUDE_DIRECTORIES in src for target level includes. Change ADD_DEFINITIONS package debug defines into CMake option. Remove -DNDEBUG
* [svn-r23115] Added a new test for KIND C_INT64_T, which some earlier windows ↵Scot Breitenfeld2012-12-211-0/+4
| | | | | | Intel versions (<12.1) did not support.
* [svn-r22430] CMake and configure synchronization effort. CMake added most ↵Allen Byrne2012-06-041-0/+5
| | | | | | | | tests and options: DEBUGPKG not addressed. Still needed: compiler wrapper scripts Tested: local linux(cmake) and h5committest
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