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* Add CMake api checks to test the new Examples folder. (#3907)Allen Byrne2023-12-221-6/+7
| | | | | | | | | * Fix missing build-mode value * Use 110 version file only for the 1.10 library * Fix H5_LIBVER_DIR variable * Disable 1.6 API tests for now.
* Add VDS examples and fix non-standalone build (#3898)Allen Byrne2023-12-214-9/+116
| | | | | | | | * Choose a size for rdata dimension * Fix platform naming conflicts * Fix doxygen references to point within library repo
* Add variable option syncing for examples (#3885)Allen Byrne2023-12-143-50/+83
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* Correct urls and handling of external git repos (#3890)Allen Byrne2023-12-132-5/+16
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* Update examples with 1.6 api and static libs (#3874)Allen Byrne2023-11-291-3/+10
| | | | | | | * Update examples with 1.6 api and static libs * Only check for STATIC only builds * Do not calculate version as library has already.
* Develop merge examples (#3851)Allen Byrne2023-11-273-4/+30
| | | | | | | | | * Merge examples repo into library * Change grepTest to be more fault-tolerant * Update examples macro file * Exclude all Fortran examples from doxygen
* Add HDF5_DISABLE_TESTS_REGEX option to skip tests (#3859)Allen Byrne2023-11-221-0/+5
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* Do not publish compression headers or docs (#3865)Allen Byrne2023-11-212-97/+3
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* Fixes for CI and presets (#3853)Allen Byrne2023-11-151-8/+10
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* Add CMake long double cross-compile defaults (#3683)Dana Robinson2023-11-151-24/+35
| | | | | | | | | | | | | | | | | | | HDF5 performs a couple of checks at build time to see if long double values can be converted correctly (IBM's Power architecture uses a special format for long doubles). These checks were performed using TRY_RUN, which is a problem when cross-compiling. These checks now use default values appropriate for most non-Power systems when cross-compiling. The cache values can be pre-set if necessary, which will preempt both the TRY_RUN and the default. Affected values: H5_LDOUBLE_TO_LONG_SPECIAL (default no) H5_LONG_TO_LDOUBLE_SPECIAL (default no) H5_LDOUBLE_TO_LLONG_ACCURATE (default yes) H5_LLONG_TO_LDOUBLE_CORRECT (default yes) H5_DISABLE_SOME_LDOUBLE_CONV (default no) Fixes GitHub #3585
* Correct ENV variables (#3841)Allen Byrne2023-11-111-6/+7
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* Set NVHPC maximum optimization level to -O1 for now (#3800)jhendersonHDF2023-11-011-0/+38
| | | | | | | | | | | | | | * Set NVHPC maximum optimization level to -O1 for now Compiling HDF5 with NVHPC 23.5 - 23.9 results in test failures in 4 different test files that need to be resolved. Since those tests pass with an optimization level of -O1 (and -O0) and it is currently unclear whether the test failures are due to issues in HDF5 or issues in the 'nvc' compiler, set the maximum optimization level for NVHPC to -O1 until the test failures are resolved. * Disable nvhpc Java testing in CMake and amend known issues * Re-enable testing of Autotools nvhpc
* Use the current toolchain for examples as default (#3810)Allen Byrne2023-11-013-1/+20
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* Remove CDASH_LOCAL variable reference (#3796)Allen Byrne2023-10-303-14/+6
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* Organize CMake config features like libsettings (#3725)Allen Byrne2023-10-191-19/+30
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* Develop intel split (#3722)Allen Byrne2023-10-193-47/+101
| | | | | | * Split intel compiler flags into sub-folders * Update Intel options for warnings * Mostly CMake, Autotools needs additional work
* Some corrections and fix for plugins (#3712)Allen Byrne2023-10-193-57/+7
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* Add NVidia compiler support and CI (#3686)Allen Byrne2023-10-183-3/+40
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* Sync changes that are only in 1.14 branch (#3704)jhendersonHDF2023-10-182-17/+1
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* Correct use of set() command with options (#3667) (#3703)jhendersonHDF2023-10-181-2/+2
| | | | | | | * Correct use of set() command with options * Force filter off if not found Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
* Address nagfor exceptions stoppage. (#3658)Scot Breitenfeld2023-10-111-0/+5
| | | | | | | * added cmake ieee flag for nagfor * generalized determining the nag compiler * fixing some misc. NAG warnings
* Use real URLs and updated names for plugins (#3651)Allen Byrne2023-10-102-40/+47
| | | * synchronize TGZ naming convention/usage
* Remove old EXTERNALPROJECT_ADD in favor of FETCH_CONTENT (#3624)Allen Byrne2023-10-044-165/+29
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* Fix several spelling/grammar issues (#3621)jhendersonHDF2023-10-031-1/+1
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* Develop tools move (#3580)Allen Byrne2023-09-261-1/+1
| | | Reorganizes the tools files to support the VOL tests
* Fix windows cpack with debug (#3525)Allen Byrne2023-09-111-1/+1
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* Fix the Fortran include dir in install config files (#3454)Allen Byrne2023-09-021-2/+3
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* Output stderr file in CMake testing on failure (#3431)jhendersonHDF2023-08-261-0/+4
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* Convert some H5MM calls to standard C equivalents (#2382)Dana Robinson2023-08-251-0/+1
| | | | | | | | | * H5MM_calloc and malloc are now mapped to stdlib C calls * H5MM_memcpy now maps directly to memcpy in release builds * H5MM_memcpy is still implemented as a separate function that checks for buffer overlap when H5MM_DEBUG is defined (default w/ debug builds) * Switches many library memcpy calls to use H5MM_memcpy * Fixes a possible zero allocation in H5Olayout.c
* Re-enable SZIP default to ON in CMake (#3414)Allen Byrne2023-08-232-7/+3
| | | The Autotools were handled in a separate commit
* Update presets, examples uncompress, szip cache (#3391)Allen Byrne2023-08-182-2/+6
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* Correct script (#3377)Allen Byrne2023-08-161-1/+1
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* set H5_PAC_C_MAX_REAL_PRECISION default to 0 when cross sompiling with (#3364)Larry Knox2023-08-091-11/+13
| | | CMake to fix Fortran build failures.
* CMake: (fix) Threads dependency (#3267)Jan-Willem Blokland2023-07-241-0/+5
| | | | | | - If the HDF5 library has been build with either thread-safety or subfiling VFD feature on it will have an additional dependency on a threading library. This dependency has been added to the hdf-config.cmake.in file.
* Option changed but not all references (#3252)Allen Byrne2023-07-181-2/+2
| | | | | * Option changed but not all references * remove quotes from binary var
* Fix some warnings in developer builds (#3247)jhendersonHDF2023-07-181-0/+13
| | | | | * Fix some warnings in developer builds * Switch approach to Winline flag
* Fix CMake builds when Subfiling VFD isn't enabled (#3250)jhendersonHDF2023-07-171-0/+1
| | | | | * Fix CMake builds when Subfiling VFD isn't enabled * Add Subfiling VFD entry to hdf5-config.cmake.in
* Subfiling VFD source cleanup (#3241)jhendersonHDF2023-07-132-0/+18
| | | | | | | | | | | | | | | | * Subfiling VFD source cleanup Modularize Subfiling CMake code into separate CMakeLists.txt file Update Mercury util code to latest version and update Copyright Generate mercury_util_config.h header file instead of using pre-generated file Remove unnecessary Mercury functionality Fix minor warning in Subfiling VFD code * Remove Mercury headers from Autotools publicly-distributed header list
* Adjust presets timeout and fix build script VS versions (#3215)Allen Byrne2023-06-301-7/+7
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* Remove checks for setsysinfo, which is unused (#3205)Dana Robinson2023-06-292-4/+0
| | | | * Autotools * CMake
* chore: fix grammar (#3207)H. Joe Lee2023-06-291-1/+1
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* Many fixes to various compiler warnings (#3124)Sean McBride2023-06-192-3/+3
| | | | | | | | | | | * Fixed various -Wmissing-variable-declarations by adding static keyword * In a few cases, renamed the variable suffix from _g to _s. * Fixed some -Wmissing-variable-declarations by using different declaration macros * Fixed various -Wconditional-uninitialized warnings by just initializing variable to zero * Fixed various -Wcomma warnings * Fixed clang -Wstrict-prototypes warnings * Fixed various -Wunused-variable warnings * Updated some casts to fix the only 3 -Wcast-qual warnings * Fixed the only -Wsometimes-uninitialized warning
* CMake: (feature) ROS3 and cmake config file. (#3146)Jan-Willem Blokland2023-06-161-0/+1
| | | | | - Added a cmake variable to the hdf5-config.cmake file which indicate if the library has been build with or without the read-only S3 functionality.
* Revert long double checks (#3133)Dana Robinson2023-06-153-0/+403
| | | | | | | * Revert "Remove long double conversion work-arounds (#3097)" This reverts commit 1e1dac1dac58fa18f6b7788346d1ba7d3315b0f9. * Update comments to reflect newer systems
* Remove unused HD macros (#3120)Dana Robinson2023-06-142-23/+0
| | | | | | | | | * Remove unused HD macros The library prefixes most C and POSIX API calls with 'HD'. We are going to start removing these so the code looks like normal C. This PR removes most of the unused HD markup macros. * Replace ntohl/ntohs
* Remove H5detect and H5make_libsettings (#3104)Dana Robinson2023-06-131-15/+17
| | | | | | | | Removes H5detect and H5make_libsettings from the build and replaces their functionality with things that don't affect cross-compiling. H5detect --> floating-point types are now detected on library load H5make_libsettings --> Moved functionality to a new H5build_settings.c template file
* Remove long double conversion work-arounds (#3097)Dana Robinson2023-06-123-400/+0
| | | | | | | | | | | | | | | | | | | | | Several options and public symbols that were provided to paper over non-standard long double conversions between signed/unsigned long and long long values were removed from the Autotools and CMake. These were added twenty years ago, when C99 and 64-bit platforms were less common and are no longer needed. Autotools: --enable-dconv-accuracy CMake: HDF5_WANT_DATA_ACCURACY H5pubconf.h symbols: H5_WANT_DATA_ACCURACY H5_LDOUBLE_TO_LONG_SPECIAL H5_LONG_TO_LDOUBLE_SPECIAL H5_LDOUBLE_TO_LLONG_ACCURATE H5_LLONG_TO_LDOUBLE_CORRECT H5_DISABLE_SOME_LDOUBLE_CONV
* Remove variable dereferences in CMake (#3080)Dana Robinson2023-06-121-3/+3
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* Make some changes to configure.ac to suppor MinGW (#3096)Dana Robinson2023-06-121-2/+2
| | | | | | | Adds some H5pubconf.h entries and cpp flags for building on MinGW using the Autotools. Also updates the Windows-related H5pubconf.h comments to be more accurate in CMake.
* Don't use -fstdarg-opt with clang-tidy (#3079)Dana Robinson2023-06-071-1/+3
| | | | | | | | | | | * HDFCompilerFlags: mask -fstdarg-opt with clang-tidy `clang-tidy` doesn't understand this `-f` flag and errors out. * Add helpful comment --------- Co-authored-by: Sean McBride <sean@rogue-research.com>
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