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* Hdf5 1 10 merge warnings changes (#756)Allen Byrne2021-06-161-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 10 update license url part2 (#404)Larry Knox2021-03-011-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Modify temporary rpath for testing in java example scripts. (#230) * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Update license url (#332) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories. * Update license url part2 (#333) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test. * Update URL in source file Copyright headers for web. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Sean McBride <sean@rogue-research.com>
* 1 10 merges from develop (#320)Allen Byrne2021-02-081-0/+9
| | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop
* Warnings merge 110 (#300)Allen Byrne2021-02-041-4/+21
| | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * Merge dev warnings refactor from develop
* Revise gnu-*flags and cmake/HDF*CompilerFlags.cmake files to add warningLarry Knox2020-05-191-60/+9
| | | | | | | flags for GCC compilers version 4.8 and above. Removed files from gnu-warnings that only apply to versions < 4.8. Consolidated warnings from versions < 4.8 that apply to versions >= 4.8 into the 4.8 warnings files.
* Restrict errors to gcc 4.8 and above.Allen Byrne2020-04-271-0/+2
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* TRILAB-244 separate CXX warnings and errors from CAllen Byrne2020-04-271-19/+19
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* Don't add general warnings flags for unsupported old versions of gcc andLarry Knox2020-04-211-2/+4
| | | | | | g++ (older than gcc/g++ 4.2). Correct gnu-cxxflags to determine warnings flags to be added based on C++ compiler version instead of C compiler version.
* Add missing " and update function calls incorrectlyLarry Knox2020-04-121-11/+11
| | | | | | named load_gcc_arguments. Commit changes to gnu-cxxflags to remove unmatched " and to gnu-fflags to not add C warnings flags to H5_FCFLAGS.
* TRILAB-192 - merge changes from developAllen Byrne2020-04-071-26/+26
| | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
* TRILAB-192 merging warnings changes from developAllen Byrne2020-03-301-75/+71
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* Merge CMake and tools changes from developAllen Byrne2020-02-271-1/+3
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* Merge from dev, sanitizer, fortran, warnings and tools idsAllen Byrne2020-02-111-15/+31
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* Merge of --Wc++-compat changes from developDana Robinson2020-01-091-1/+4
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* Changed -Wformat-truncation's level from 2 to 1.Dana Robinson2020-01-091-1/+1
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* Merge fixes and code reconciliation wit developAllen Byrne2019-08-051-331/+160
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* Update cmake macros and java arg formatAllen Byrne2019-05-311-9/+9
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* Correct typo in comment in config/gnu-flags.Larry Knox2018-07-261-1/+1
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* Apply Cygwin pathches from Marco Atzeri.Larry Knox2018-07-261-1/+13
| | | | Commit Joe Lee's typo corrections for src/H5MF.c.
* Merge of recent develop work to 1.10 branch.Dana Robinson2017-07-051-1/+1
| | | | | | | | | | Fixes for: * HDFFV-10247 (autotools Fortran long double bug) * HDFFV-10248 (autotools deprecated debug/production tweak) * HDFFV-10250 (-fno-omit-frame-pointer w/ symbols) * Disabled missing parameter warnings in Java constant code * Added H5I_VFL ID checks to tmisc.c * Added 'get a dummy VFD' call to h5test library
* Merge of recent develop work to 1.10 branch:Dana Robinson2017-05-311-607/+88
| | | | | | | | | * H5FD_FEAT_DEFAULT_VFD_COMPATIBLE VFD feature flag (HDFFV-10214) * H5FDdriver_query() API call (HDFFV-10215) * Fix to skip SWMR tests that when the current VFD is not compatible with the default VFD (HDFFV-10197) * Removed obsolete compiler versions from config/gnu-flags (HDFFV-9937) * Many warning fixes
* Change copyright headers to replace url referring to file to be removedlrknox2017-04-141-6/+4
| | | | | | | | and replace it with new url for COPYING file. Fix 2 lines in java error test expected output file where messages include line numbers changed by reducing the copyright header by 2 lines.
* Updated the developer flags so that they respect gcc versions.Dana Robinson2017-01-121-19/+87
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* Added an --enable-developer-warnings option to configure soDana Robinson2017-01-101-24/+16
| | | | | users can ignore -Wsuggest-attribute warnings and other noise that doesn't indicate poor code quality.
* [svn-r30026] Description:Quincey Koziol2016-06-061-9/+9
| | | | | | | | Remove -Wnormalized from GCC 4.x builds. Tested on: elk (w/gcc 4.4.7) moohan (w/gcc 4.8.5)
* [svn-r30015] Description:Quincey Koziol2016-06-051-25/+97
| | | | | | | | Update GNU compiler flags for 6.x release. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29131] Updated the GNU g++ compiler config file to use the new debug/Dana Robinson2016-02-171-1/+1
| | | | | | | production, etc. system. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial - prod/debug w/ C++
* [svn-r29129] Added NO_SYMBOLS_CFLAGS, etc. to allow stripping symbols whenDana Robinson2016-02-171-3/+1
| | | | | | | | | | | | | | | | | | | | --disable-symbols is specified and to ensure that production mode (where symbol stripping is usually a part of the FLAGS) doesn't conflict with --enable-symbols. This will allow better (though still limited) debugging of production/optimized code. The PGI, XLC, Intel, and Solaris files were not modified and do not generate the symbol removal flag at this time. They'll be updated in future check-ins. In the meantime, production mode on those platforms still usually strips symbols. This check-in also updates the Cygwin-specific files to use the new autotools FLAGS and option scheme when uncommon (non-gnu, etc.) Fortran compilers are used. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (prod/debug w/ and w/o symbols) symbol presence/absence checked with objdump
* [svn-r29023] Fixed typos in symbols flags that prevented using -g, etc.Dana Robinson2016-02-011-2/+2
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools
* [svn-r28996] Autotools configure updates to allow separation of build type, ↵Dana Robinson2016-01-271-11/+36
| | | | | | | | | | | | | | debug symbols, asserts, profiling, and optimization. Also much refactoring, improved help, and --enable-<foo> options will now emit errors on nonsense (e.g.: --enable-foo="asdfasdf"). The libhdf5.settings.in file was also reformatted. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial and parallel autotools w/ various options
* [svn-r27722] Updated the gnu config to cover gcc 5.2*.Dana Robinson2015-09-091-1/+1
| | | | Tested on: jam w/ gcc 5.2.0
* [svn-r27066] Description:Quincey Koziol2015-05-151-1/+8
| | | | | | | Protect gcc 5 debugging options Tested on: MacOSX/64 10.10.3 (amazon) w/gcc 5.1
* [svn-r27060] Description:Quincey Koziol2015-05-141-161/+90
| | | | | | | | | Clean up obsolete and unsupported versions of GCC, and update for GCC 5.1 release. Tested on: Mac OSX/64 10.10.3 (amazon) w/C++, FORTRAN, serial, production & parallel (gcc 5.1 not available on other systems)
* [svn-r25756] Removed the -Wunsuffixed-float-constants warning from the gnu-flagsDana Robinson2014-10-311-1/+1
| | | | | | | | | | | | | script. The warnings that this generates cannot easily be resolved in platform-independent C code since gnu expects the non-standard (gnu) 'D' suffix for double constants. It's still technically useful for catching float and long double constants, but should probably be enabled by developers on an as-needed basis for that purpose so the spurious warnings are avoided. Tested on a local linux VM with gcc 4.8.2. This is a very minor change.
* [svn-r25206] Description:Quincey Koziol2014-05-201-3/+79
| | | | | | | Add new warning flags for gcc 4.9.x Tested on: MacOSX/64 10.9.3 (amazon) w/gcc 4.9.0
* [svn-r24171] Purpose: Fix problem with gcc 4.8Neil Fortner2013-09-191-5/+0
| | | | | | | | | | | | | | Description: With optimization enabled, gcc 4.8 inserts garbage into the padding bytes of floating point types when assigning from a literal constant. This caused problems when H5detect.c scanned the bits in floating point types to determine their properties. Modified H5detect.c to scan for padding before further analyzing the type, and to ignore all information in the padding areas. Also removed code that temporarily disabled optimization. Tested: jam, koala, ostrich, platypus (h5committest)
* [svn-r24101] Description:Quincey Koziol2013-09-051-2/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up warnings, enable new compiler warning flag(s) and bring back changes from Coverity branch: r20813: Remove the dead code as listed for coverity bug #1722. h5committested. r20814: Issue 69: Check return value and throw error if negative return. Also free datatype id on error r20815: Use HDstrncpy. --gh r20816: Replaced one last HDstrcat call with HDstrncat to resolve coverity issue 832. r20817: Use HDstrncpy and HDstrncat. --gh r20818: Purpose: Fix valgrind issues with h5jam Description: Modified h5jam to free strings strdup'd in parse_command_line before exit. Note that they may still not be freed in case of error, due to the widespread use of exit(). r20819: Issue 80: change loop to use int as loop index. r20820: Maintenance: Fixed the bug found by coverity CID 788 There were two problems with this function: 1) it tried to unnecessary free NULL pointer 2) it tried to allocate c_name buffer that is done by H5Pget_class_name Tested on: Mac OSX 10.8.4 (amazon) w/gcc 4.8.1, C++ & FORTRAN (too minor to require h5committest)
* [svn-r24098] Issue 8500 - H5detect.c has trouble to find info for long ↵Raymond Lu2013-09-041-0/+5
| | | | | | | | | double with GCC 4.8. A user in the forum found the problem in H5detect.c (uninitialized buffer) and provided the solution. I checked it in yesterday. But it turned out to be a false fix. So I'm back it out. Tested on jam - reverse of changes.
* [svn-r24095] Issue 8500 - H5detect.c has trouble to find info for long ↵Raymond Lu2013-09-031-5/+0
| | | | | | | | double with GCC 4.8. A user in the forum found the problem in H5detect.c (uninitialized buffer) and provided the solution. Allen and I verified it. Tested with h5committest and CMake on jam, koala, ostrich, playtus, and Allen's virtual machine.
* [svn-r24017] Bug fix: HDFFV-8500Albert Cheng2013-08-161-0/+5
| | | | | | | | | | | The new gcc v4.8.* compilers does not work well with dt_arith which failed in production mode. Solution: A temporary patch by removing any optimization (-O*) from the PROD_CFLAGS so that dt_arith will pass for now. A more through investigation is needed. Tested: Jam and Koala where it failed and now passes.
* [svn-r23584] Description:Quincey Koziol2013-04-131-6/+77
| | | | | | | Update with new compiler warnings for gcc 4.8.x Tested on: Mac OSX/64 10.8.3 (amazon) w/gcc 4.8.0
* [svn-r22222] Description:Quincey Koziol2012-04-011-1/+75
| | | | | | | Update GCC compiler flags for new 4.7.0 release. Tested on: Mac OSX/64 10.7.3 (amazon) w/gcc 4.7.0
* [svn-r22020] Fix for HDFFV-7878.Larry Knox2012-03-031-1/+7
| | | | | | | gnu-flags Don't add gcc flags for intel compiler even though its version display includes "gcc". intel-flags Extend intel version to include icc-12*.
* [svn-r20561] Description:Quincey Koziol2011-04-201-2/+2
| | | | | | | Remove C++ specific flag from C compilation flags, for gcc 4.5 & 4.6 Tested on: FreebSD/64 8.2 (freedom) w/gcc 4.6
* [svn-r20538] Description:Quincey Koziol2011-04-181-3/+67
| | | | | | | | Update with new warning flags for gcc 4.6.x Tested on: FreeBSD/32 8.2 (loyalty) w/gcc 4.6 FreeBSD/64 8.2 (freedom) w/gcc 4.6
* [svn-r18630] Description:Quincey Koziol2010-04-271-16/+4
| | | | | | | | | | | | | | | | | | | | | | Fix remaining aliasing problems and enable optimizations w/gcc now. This addresses the remaining issues for Bug#1398. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18605] Description:Quincey Koziol2010-04-221-4/+65
| | | | | | | | Add new warning flags for gcc 4.5.x Tested on: FreeBSD/32 6.3 (duty) w/gcc 4.5 FreeBSD/64 6.3 (liberty) w/gcc 4.5
* [svn-r17248] Bug fix (1301 & 1468)Albert Cheng2009-07-281-2/+4
| | | | | | | | | | | | | | PathScale was mistaken as the Gcc compiler such that gcc flags were added to it but PathScale did not honor many of them. (e.g. -Wvariadic-macros, -Wold-style-definition, -Winit-self, -Wvariadic-macros, -Wmissing-include-dirs, -Winit-self, -Wc++-compat) Solution: Added a pre-condition to detect pathScale compiler before Gcc is accepted. Tested: Sandia Glory where PathScale compiler is available.
* [svn-r16845] Description:Quincey Koziol2009-04-231-2/+59
| | | | | | | Updated with new warning flags from gcc 4.4 Tested: FreeBSD/64 6.3 (liberty) w/gcc 4.4.0
* [svn-r16789] Bug Fix (Bug 1398):Albert Cheng2009-04-201-5/+11
| | | | | | | | | | | | | | | | | | | | | | | | | For gcc v4.3 and v4.4, with production mode, if -O3 is used, H5Tinit.c would fail to compile. Actually bad H5Tinit.c is produced. If -O (same as -O1) is used, H5Tinit.c compiled okay but test/dt_arith would fail with: Testing hard normalized long double -> signed char conversions time: comm and terminated abnormally When -O0 (no optimizatio) is used, H5Tinit.c compilete okay and all tests passed. Solution: Changed the config/gnu-flags to use -O0 for gcc v4.3 and 4.4 for production flags for now so that build and tests would work. Still need to investigate if the error is due to Gcc optimization bug or our code errors. Tested: In liberty with gcc43 and gcc44. Also, tested in jam and smirom with older versions of gcc. There are no gcc 43 or 44 compilers installed in other THG machines that I know.
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