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Brings all features from develop. Note that RELEASE.txt has not been
updated (will be done in a future PR).
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Comments and whitespace
Skip file-locking and cache changes
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Add build folder as Include for generated files
Add install option for copying Fortran mod files to include folder
Add PRI defines to win32defs file
Exclude mingw from extra flags
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flags for GCC compilers version 4.8 and above.
Removed files from gnu-warnings that only apply to versions < 4.8.
Consolidated warnings from versions < 4.8 that apply to versions >= 4.8
into the 4.8 warnings files.
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Single source, config files, for warnings for both autotools and CMake.
Update CMake libraries, tools, tests to use correct flags.
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