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* 1 12 Merges from develop (#421)Allen Byrne2021-03-042-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards
* 1 12 merges from develop (#412)Allen Byrne2021-03-031-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change
* Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5 into hdf5_1_12Larry Knox2021-02-201-4/+19
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| * 1 12 merge recent changes from develop (#344)Allen Byrne2021-02-171-4/+19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo
* | Update URL in source file Copyright headers for web copy of COPYINGLarry Knox2021-02-2075-75/+75
|/ | | | file - files not in src or test.
* 1 12 Merge #318 OSX changes from develop (#326)Allen Byrne2021-02-092-18/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop
* 1 12 merges from develop (#319)Allen Byrne2021-02-086-0/+57
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop
* Warnings merge 112 (#299)Allen Byrne2021-02-0418-23/+398
| | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Merge dev warnings changes from develop
* 1 12 merge of changes from dev (#271)Allen Byrne2021-01-1914-79/+168
| | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix
* 1 12 Remove duplicate setting (#237)Allen Byrne2021-01-051-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | * merge updates from develop * remove extension on command * Run autogen before chkmanifest * Update release text files and whitespace cleanup * Update list * OESS-98 Update plugin build option * OESS-98 fix tools test for plugins * Fix conflict * OESS-98 fix hdf5 link target * Update pkgconfig settings with version - #218 * HDFFV-10865 - merge from dev, HDFArray perf fix. * HDFFV-10865 - fix date * Remove duplicate setting
* Hdf5 1 12 - Update directory for SZ filter plugin (#199)Larry Knox2020-12-171-2/+2
| | | | | | | | | * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake Co-authored-by: Gerd Heber <gheber@hdfgroup.org> Co-authored-by: bljhdf <58825073+bljhdf@users.noreply.github.com> Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
* HDF5 1 12 - OESS-98 fix hdf5 link target (#189)Allen Byrne2020-12-161-2/+1
| | | | | | | | | | | | | | | | | | | * merge updates from develop * remove extension on command * Run autogen before chkmanifest * Update release text files and whitespace cleanup * Update list * OESS-98 Update plugin build option * OESS-98 fix tools test for plugins * Fix conflict * OESS-98 fix hdf5 link target
* OESS-98 fix tools test for plugins - HDF5 1 12 (#178)Allen Byrne2020-12-151-0/+3
| | | | | | | | | | | | | | | | | * merge updates from develop * remove extension on command * Run autogen before chkmanifest * Update release text files and whitespace cleanup * Update list * OESS-98 Update plugin build option * OESS-98 fix tools test for plugins * Fix conflict
* OESS-98 Update plugin build option - HDF5 1 12 (#173)Allen Byrne2020-12-154-116/+102
| | | | | | | | | | | | | * merge updates from develop * remove extension on command * Run autogen before chkmanifest * Update release text files and whitespace cleanup * Update list * OESS-98 Update plugin build option
* Snapshot version 1.12 release 1-3. Update version to 1.12.1-4. (#116)Larry Knox2020-11-231-1/+1
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* Manual sync with develop (#95)Dana Robinson2020-11-175-5/+46
| | | | Brings all features from develop. Note that RELEASE.txt has not been updated (will be done in a future PR).
* Add doxygen framework for CMake and autotoolsAllen Byrne2020-11-131-3/+3
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* Correct TARGET variable and CMake config file locationAllen Byrne2020-11-129-71/+22
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* OESS-98 - add option to build plugin library with hdf5Allen Byrne2020-10-232-9/+9
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* URL and options correctionsAllen Byrne2020-10-191-0/+2
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* OESS-98 add CMake option to build plugins project within hdf5Allen Byrne2020-10-166-2/+290
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* Merge changes from developAllen Byrne2020-10-086-4/+6
| | | | | Comments and whitespace Skip file-locking and cache changes
* Merge from developAllen Byrne2020-10-071-95/+0
| | | | | | github workflow files parser files bin scripts doc corrections
* Add clang-format changes from develop.Allen Byrne2020-09-282-4/+151
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* Fix memory sanity check option in CMakeJordan Henderson2020-09-241-1/+1
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* Snapshot version 1.12 release 1-2. Update version to 1.12.1-3Larry Knox2020-09-181-1/+1
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* Add zlib and szip pagesAllen Byrne2020-09-041-0/+12
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* MinGW uses "MinGW Makefiles"Allen Byrne2020-08-261-1/+6
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* Sync with developDana Robinson2020-08-017-14/+50
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* Snapshot version 1.12.1-1hdftest2020-07-191-1/+1
| | | | Update version to 1.12.1-2
* CMake updates:Allen Byrne2020-07-154-2/+9
| | | | | | Add build folder as Include for generated files Add install option for copying Fortran mod files to include folder Add PRI defines to win32defs file Exclude mingw from extra flags
* Squashed commit of the following:Larry Knox2020-06-2110-56/+460
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | commit 45b0cbc71929930a874e1c09e0770aa64d0ae697 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Apr 23 13:14:56 2020 -0500 Add C++ warnings treated as error for autotools builds. commit 6debcddcc766601799d5bd661bd60946f951a07e Author: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jun 19 16:50:03 2020 -0500 Remove tests for develop branch from testh5cc.sh.in. Add @H5_ECXXFLAGS@ to AM_CXXFLAGS. commit fed497e7f207313b2a133d3b68c942b7d7104b90 Author: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jun 12 15:06:39 2020 -0500 Merge pull request #2646 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit '998c6470d78e14228695419c3b514c35ecf3d69e': Remove unnecessary version conditions for Clang compilers. commit 92e52ce5c211bd1d3991a3b8bb67287ac7b652aa Author: Larry Knox <lrknox@hdfgroup.org> Date: Wed Jun 10 18:53:45 2020 -0500 Merge pull request #2639 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit 'a33667faf226f5d8c9633bf537893e8fce1bf1f6': Add c++ to --enable-sanitize-checks option. commit 2e802534fb997b81fa98fdd1c7d97d4310898e0d Author: Larry Knox <lrknox@hdfgroup.org> Date: Wed Jun 10 15:18:36 2020 -0500 Merge pull request #2633 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit '20eab963899841c9a003baebead8e3bc07d9e127': Remove duplicate entries in MANIFEST. Make changes to CMake CompilerFlags.cmake files so extra flags are loaded for non-GNU compilers. Update new clang files to not pick up clang as vendor for pgCC. Add new files to MANIFEST Temporary demotion of 2 -Werror warning flags that fail on macos 10.12 Remove Production flag unknown to Apple clang. commit 96ef60a58a23847a7da89a891f2415055ec2ab60 Author: Larry Knox <lrknox@hdfgroup.org> Date: Mon Jun 8 16:24:49 2020 -0500 Merge pull request #2631 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit 'b942a4d8a3e27317cac50ce37ff5302d477664d8': Clean up code to get clang version in config/linux-gnulibc1 commit 8a7c687da568e8b50b38fa53da1ca63759be6ec4 Author: Larry Knox <lrknox@hdfgroup.org> Date: Mon Jun 8 11:42:37 2020 -0500 Merge pull request #2623 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit 'c7626f79fdee4eee13925e240ef41e61f3367eab': Add flags from config/clang-warnings/*general files to H5 C and CXX flags for all versions of Clang and Clang++ compilers. Switched from cut to awk in testcheck_version.sh.in to avoid dependence on tab vs. " " in version definitions in H5public.h. Add files for adding warning flags for clang compilers in autotools configure. commit db3ef7ff3c1ed79167cecef831501411cff8291f Merge: 5a0f8d7 f9f1310 Author: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jun 19 14:46:22 2020 -0500 Merge branch 'hdf5_1_12' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_12 commit 5a0f8d7940ae57b445f545a0abd7e303ce6924ee Author: Larry Knox <lrknox@hdfgroup.org> Date: Wed Jun 10 20:15:41 2020 -0500 Merge pull request #2636 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:HDFFV-11000-update-testh5cc.sh.in-for-version to develop * commit '5c0bd670d6e9919c463fbc05de99e2ba55b0761e': Add tests for all version to H5_NO_DEPRECATED_SYMBOLS section and to section for current version, with and without default API version flags. HDFFV-11000: update-testh5cc.sh.in to test sample versioned functions in HDF5 1.10, 1.12 and develop.
* Revise gnu-*flags and cmake/HDF*CompilerFlags.cmake files to add warningLarry Knox2020-05-1929-337/+99
| | | | | | | flags for GCC compilers version 4.8 and above. Removed files from gnu-warnings that only apply to versions < 4.8. Consolidated warnings from versions < 4.8 that apply to versions >= 4.8 into the 4.8 warnings files.
* Correct mingw pathsAllen Byrne2020-05-152-7/+11
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* Correct mingw pathAllen Byrne2020-05-151-2/+2
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* Whitespace cleanup compared to developAllen Byrne2020-05-094-18/+18
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* Correct filenameAllen Byrne2020-05-081-7/+7
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* OESS-65 Fix packagingAllen Byrne2020-05-084-4/+4
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* OESS-65 replace szip with aec libraryAllen Byrne2020-04-277-79/+55
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* Merge pull request #2528 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_12 to ↵hdftest2020-04-2710-104/+184
|\ | | | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit '8a4905b9d329b582b04d1cc2705d9e367f4dd20b': Restrict errors to gcc 4.8 and above. Merge pull request #2537 in HDFFV/hdf5 from ~DYOUNG/werror:fix-werrors to develop Fix NoFilter build TRILAB-244 separate CXX warnings and errors from C Don't add general warnings flags for unsupported old versions of gcc and g++ (older than gcc/g++ 4.2). Correct gnu-cxxflags to determine warnings flags to be added based on C++ compiler version instead of C compiler version.
| * Restrict errors to gcc 4.8 and above.Allen Byrne2020-04-262-25/+22
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| * TRILAB-244 separate CXX warnings and errors from CAllen Byrne2020-04-269-50/+121
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| * Don't add general warnings flags for unsupported old versions of gcc andLarry Knox2020-04-214-41/+53
| | | | | | | | | | | | g++ (older than gcc/g++ 4.2). Correct gnu-cxxflags to determine warnings flags to be added based on C++ compiler version instead of C compiler version.
* | Snapshot version 1.12 release 1 (snap0)hdftest2020-04-271-1/+1
|/ | | | Update version to 1.12.1-1
* TRILAB-192 version of std=f2008 special checkAllen Byrne2020-04-141-42/+47
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* TRILAB-192 - cleanup edits and match CMake CXX to autotoolsAllen Byrne2020-04-134-88/+199
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* Add missing " and update function calls incorrectlyLarry Knox2020-04-123-27/+27
| | | | | | namedload_gcc_arguments. Commit changes to gnu-cxxflags to remove unmatched " and to gnu-fflags to not add C warnings flags to H5_FCFLAGS.
* TRILAB-192 - merge changes from developAllen Byrne2020-04-0721-845/+811
| | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
* Correct extra flagsAllen Byrne2020-04-011-2/+2
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* TRILAB-192 merging warnings changes from developAllen Byrne2020-03-3045-221/+570
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