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* [svn-r11768] Purpose:Albert Cheng2005-12-071-0/+0
| | | | | | | | | | | | Feature. Description: Removed the entry for tflops which has retired. Added a special --host entry for redstorm. This allows "configure --host=redstorm" for building in RedStorm. Platforms tested: Red Storm.
* [svn-r11761] Purpose:Albert Cheng2005-12-051-1/+1
| | | | | | | | | | | | | Unstable format version marker. Description: This marks the Check in baseline for compact group revisions, which radically revises the source code for managing groups and object headers. Earlier versions (1.7.52 or earlier) have the original format. This version and later have the unstable format until further notice. Platforms tested: h5committested.
* [svn-r11741] Purpose:James Laird2005-11-181-6/+16
| | | | | | | | | | | | | | | | | Bug fix Description: Fortran type generation was broken in two ways. Fixed both. Solution: Firstly, there were a couple of path problems. Fixed a typo and specified the full path of a file. Secondly, the dependencies weren't right when building with HDF5-specific commands (make lib, make check-s, etc.). Tweaked dependencies to fix the problem. Platforms tested: mir, modi4, sleipnir
* [svn-r11738] Purpose:James Laird2005-11-181-0/+4
| | | | | | | | | | | | | | | | | | | Configure feature Description: Added 'make trace' target. Solution: Added tracing to 1.7. This was done automatically in 1.6, but left out of 1.7 until now (oops!). Tracing in 1.7 only happens manually, when the user types 'make trace.' Tracing automatically requires more framework than it's worth. I also fixed a couple of tracing bugs and ran trace. Platforms tested: mir, sleipnir, modi4 Misc. update:
* [svn-r11737] Purpose:James Laird2005-11-172-1/+9
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix Description: Before this checkin, 'gmake check-s' would fail if there was a file in the current directory named 'check-s'. This is fixed under gmake (not sure how to fix for other makes). Solution: check, progs, install, etc. are what gmake calls "phony" targets, which means that no file should be created. These targets can be specified by a line of the form .PHONY: check progs install ... Automake adds this line for targets it knows about, but HDF5 has a lot of custom rules. This checkin adds a .PHONY line for those rules. I believe that only gmake recognizes the .PHONY line (at least, pmake doesn't seem to), but a partial solution is better than none. This error should occur very rarely anyway (the user has to manually create files with names like 'build-check-s' or '_test'). Platforms tested: mir, sleipnir, modi4
* [svn-r11646] Purpose:James Laird2005-10-311-4/+16
| | | | | | | | | | | | | | | | | | Bug fix/feature Description: Added support for -shlib in h5fc and h5c++. Made check-install use -shlib when only shared libraries have been installed. Solution: h5fc and h5c++ didn't recognize -shlib. Stole code from h5cc to link against shared libraries. When static libraries are disabled, the examples Makefiles will automatically use the -shlib option to link against shared libraries. Thus, --disable-static and make check-install should work together. Platforms tested: heping(disable-static, enable-static, fortran, c++), modi4 (disable-static, fortran, c++, parallel, enable-static)
* [svn-r11639] Purpose:Albert Cheng2005-10-311-1/+2
| | | | | | | | | | Cleanup Description: Removed the redundent use of -Minform,warn which is the default anyway. Platforms tested: Heping with pgi compilers.
* [svn-r11638] Purpose:Albert Cheng2005-10-311-2/+2
| | | | | | | | | | | | | | | | | | | Bug fix. Description: PGI v6.0-5 pgf90 compiler has a bug in Mstandard that caused compiling of legal logical value to fail. We also have second thought of imposing -Mstandard and -Mdclchk on users since these flags are included in h5fc. Solution: Removed -Mstandard until we can fix the v6.0-5 compiler error and moved -Mdclchk to DEBUG_FFLAGS so that it is used during development mode but not imposed on users for production release. Platforms tested: heping: production and development mode using v6.0-4 compiler. mir: production and development mode using v6.0-4 compiler.
* [svn-r11614] Frank Baker2005-10-2843-43/+43
| | | | | | | Description: Correct typo in copyright notice. Platforms tested: Ran hdf5/bin/chkcopyright without errors.
* [svn-r11612] Purpose:James Laird2005-10-271-1/+1
| | | | | | | | | | | | | Bug fix Description: Failed parallel tests now cause make to exit with an error. Solution: Edited config/conclude.am to throw an error if parallel test programs fail. Platforms tested: heping, modi4
* [svn-r11610] Purpose:Albert Cheng2005-10-263-31/+46
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: The previous way of detecting the MPICH version fails if the suspected $CC does not give the expected MPICH version information. Though no consequence, it generates error messages that alarm users. Also, mpich2 gives the version information as if it were mpich v1.0.2 which was incorrectly included as an earlier version of the origianl mpich. Solution: Implemented a more robust code to detect the version and narrow the recognition down to v1.2.0-v1.2.5. Also, the code were duplicated in two files (linux-gnulibc1 and ia64-linux-gnu). Combined them into a new file called mpich. Platforms tested: Tested in heping using mpicc and mpich2/mpicc and also in tg-ncsa. Misc. update: Updated MANIFEST.
* [svn-r11592] Frank Baker2005-10-2144-0/+567
| | | | | | | | Description: Add source code copyright notice; comment symbols vary by type of file. Platforms tested: No changes that should cause any problems. Nonetheless, the tree will be checked out fresh and tests run immediately post-commit.
* [svn-r11514] Purpose:James Laird2005-10-071-2/+16
| | | | | | | | | | | | | | | | | | | Bug fix Description: Fixed config file for apple powerpcs. Should detect xlf more often (though not infallibly). Should disable shared libraries when xlf is being used. Solution: Since neither xlf nor f95 have "version" options (which could be used to identify which compiler is being used), the config file checks if the fortran compiler is named 'xlf' (or /path/xlf). If not, it assumes the compiler must be f95. xlf is still the default if no compiler is named at all. Platforms tested: pommier (change only to mac-specific config file)
* [svn-r11489] Snapshot version 1.7 release 51HDF Admin2005-10-021-1/+1
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* [svn-r11478] Purpose:Albert Cheng2005-09-291-8/+7
| | | | | | | | | | | | | | | | bug fix. Description: When a parallel test script test fails, make would continue because the way it was setup inside a for loop. Fixed it by issuing an exit 1 inside the loop. There was also a typo error in the newer command comparision that it must be $${chkname} in order to be valid. Also, the test script itself was not checked in the newer lists. All fixed. Platforms tested: h5committested and also hand tested in heping pp mode.
* [svn-r11461] Purpose:James Laird2005-09-2221-362/+0
| | | | | | | | | | | | | | | Code cleanup Description: Removed Fortran type sizes from config/* files. Solution: These lines weren't doing anything anymore; they've been replaced by automatic type generation. This is just housekeeping to remove them from the config/* files. Platforms tested: mir, sol, modi4
* [svn-r11460] Purpose:James Laird2005-09-221-12/+13
| | | | | | | Documentation update Description: Updated config/Makefile.am.blank now that I know better.
* [svn-r11446] Purpose:James Laird2005-09-201-2/+3
| | | | | | | | | | | Bug fix Description: Massaged the newer script and config/conclude.am to make SX6 happy. Platforms tested: SX6, sol, mir
* [svn-r11431] Purpose:Albert Cheng2005-09-183-3/+4
| | | | | | | | | | | | | | | | | New feature. Description: Added the time command to the make check target to report time usage of the execute of each test and test scripts. This gives us some idea how long each test takes and some vague idea it is compute bound or not. powerpc-ibm-aix5.x: Change $RUNPARALLEL default setting to allow it being invoked by the time command. Platforms tested: h5committested.
* [svn-r11421] Purpose:James Laird2005-09-161-0/+7
| | | | | | | | | | | | | | | Feature Description: Added H5_CFLAGS, etc. to 1.7 branch. Now compilation flags can be put in H5_*FLAGS and they'll be used when building hdf5 but not in h5cc. Platforms tested: mir, sleipnir, modi4 Misc. update:
* [svn-r11414] Purpose: Rename a API functionRaymond Lu2005-09-141-2/+2
| | | | | | | | | | | Description: The API function H5Tis_hard() which was recently checked in has been renamed to H5Tcompiler_conv() to be more descriptive. No other changes. Platforms tested: fuss - simple change. Misc. update: config/lt_vers.am to update libtool version.
* [svn-r11405] Purpose:Leon Arber2005-09-131-0/+92
| | | | | | | | | | | | | | | Bug fix Description: A whole chunk of this file somehow got deleted and the heavily reduced file was accidentally checked in. This is the complete version of the file, with the mpiicc fix. Solution: Platforms tested: Misc. update:
* [svn-r11400] Purpose: MaintenanceElena Pourmal2005-09-131-2/+5
| | | | | | | | | | | Description: Added -K c99 flag to sxc++ flags to ienforce C99 standard; added cache values for getrusage and gethostname Solution: Platforms tested: SX-6 Misc. update:
* [svn-r11397] Purpose:Leon Arber2005-09-131-1/+0
| | | | | | | | | | | | | | | | Bug fix Description: Forgot to remove a debug statement before committing. Solution: The script printined out what it thought CC_BASENAME was for debugging. Removed this print statement. Platforms tested: minor change, mcr Misc. update:
* [svn-r11394] Purpose:Leon Arber2005-09-121-93/+2
| | | | | | | | | | | | | | | Bug fix Description: Same bug as was just checked in for v16. Do the complicated derived datatype check for compilers named mpiicc in addition to mpicc. Solution: Platforms tested: Misc. update:
* [svn-r11360] Purpose: SX-6 portElena Pourmal2005-09-071-1/+1
| | | | | | | | | | Description: SX-6 doesn't need to use ranlib. Solution: Set RANLIB variable to ":" (suggested by James) Platforms tested: SX-6 Misc. update:
* [svn-r11357] Purpose: SX-6 portElena Pourmal2005-09-061-6/+24
| | | | | | | | | | Description: Brought back changes from SX-6. Solution: Platforms tested: SX-6 NEC America Misc. update:
* [svn-r11323] Purpose:Albert Cheng2005-08-311-1/+2
| | | | | | | | | | | | | | | | tidy up. Description: MPE option created *.clog file whenever it is executed in MPI. The cleanup of *.clog files were done in individual Makefile.in. Often, it is forgotten. Solution: Moved the cleaning of *.clog files to CHECK_CLEANFILES in commence.am so that it is applied whenever check-clean is called. Platforms tested: heping pp using MPE.
* [svn-r11319] Purpose:James Laird2005-08-301-1/+1
| | | | | | | | | | | | | | | | | | | | | | | Bug fixes Description: This checkin fixes an occasional error on kelgia on sol during distclean. It also causes test scripts to depend properly on the programs they're supposed to be testing. Solution: The kelgia bug was due to some files being cleaned by automake and manually. Removed the manual cleaning in src/Makefile.am. Test script dependencies now need to be specified manually, since the makefile can't guess what they test from their name. Currently all test scripts in a given directory have a single list of dependencies--this was easy and seems to be sufficient. These dependencies are listed in the SCRIPT_DEPEND variable in the Makefile.am. Platforms tested: heping, mir, modi4, sol Misc. update:
* [svn-r11311] Purpose: New features.Raymond Lu2005-08-292-6/+6
| | | | | | | | | | | | | | | | | | | | Description: Added 2 new configure options, --enable-exception and --enable-accuracy. --enable-exception lets the library check whether user's exception handling functions are present during compiler data conversions and use them if they are. When it's disabled, this step is skipped to improve conversion speed. This step isn't implemented yet for soft conversions because there would be little gain in speed. --enable-accuracy guarantees data accuracy during data conversions. It means the library will choose compiler conversions only if the accurate data is secured. Otherwise, the library will go for the library's own conversions. If this option is disabled, the library uses compiler conversions in favor of their speed as long as they work even if data can be incorrect. Platforms tested: h5committest and fuss. Some systems may fail after this checkin.
* [svn-r11303] Purpose:Albert Cheng2005-08-262-24/+15
| | | | | | | | | | | | minor tidy up. Description: Changed both test programs and test scripts to use the same suffixes (.chkexe and .chklog). Changed from .log to .chklog to avoid running into potential conflicts by other "things" (e.g., config.log). Tested: Heping.
* [svn-r11257] Purpose:Albert Cheng2005-08-171-1/+4
| | | | | | | | | | | | | | Update & feature Added a new cached data conversion setting. Added -DH5_FLOPS to CPPFLAGS for compiling. Had used the builtin __PUMAGON__ but H5_TFLOPS is more meaningful. Platforms tested: Tested in Flops. Misc. update:
* [svn-r11212] Purpose:Albert Cheng2005-08-081-8/+2
| | | | | | | | | | | | | | | | Bug fix and improvement. Description: The test output were not displayed for parallel tests. The serial tests output were always displayed whether the test was actually ran this time or not. Solution: Moved the display of test output inside the target where the actual tests are run. Platforms tested: Tested in heping using pp and fortran.
* [svn-r11207] Purpose:Albert Cheng2005-08-081-55/+63
| | | | | | | | | | | | | | | | | | | | | Bug fix and code minor cleanup. Description: The attempt to redirect stderr together to the log files were done in the wrong order such that stderr output goes to where stdout WAS. Fixed that. Code minor cleanup--use shell variables to hold the name of the log file and the test instead of generating them repeatedly. This makes easier code reading, less crowded and avoid typos. Only conclude.in is changed. The Makefile.in changes are all derived from automake. Platforms tested: h5committested. Misc. update:
* [svn-r11204] Snapshot version 1.7 release 50HDF Admin2005-08-071-1/+1
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* [svn-r11192] Purpose:Albert Cheng2005-08-031-0/+163
| | | | | | | | | | | | | | Port to Red Storm Description: Initial version to configure for SNL Red Storm. To configure for it, do ./configure --host=x86_64-redstorm-linux Platforms tested: Tested in Red-storm. Many things are still failing but this will make the configure part easier. Misc. update:
* [svn-r11185] Purpose:James Laird2005-08-022-2/+3
| | | | | | | | | | | | | | | Makefile feature Description: 'make check-clean' now cleans *.h5 files created by tests as well as .log and .chkexe files. Solution: check-clean is now a separate target in its own right, which cleans less than mostlyclean (check-clean < mostlyclean < clean < distclean). Platforms tested: mir, heping, modi4 (serial and parallel)
* [svn-r11179] Purpose:James Laird2005-08-012-5/+13
| | | | | | | | | | | | | | | | | | | Feature: check-clean target Description: 'make check-clean' cleans up output files from tests. Solution: Tests create foo.chkexe and foo.log files. Scripts create foo.chksh and foo.logsh files. 'make check-clean' will clean these files up so that the tests can be re-run. Also suppressed some not-very-useful output of Makefiles when it would echo commands. Platforms tested: mir, sleipnir, modi4 Misc. update:
* [svn-r11148] Snapshot version 1.7 release 49HDF Admin2005-07-241-1/+1
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* [svn-r11144] Purpose:Quincey Koziol2005-07-231-0/+146
| | | | | | | | | | | New port Description: Elena asked me to check in her NEC SX-6 work, so here it is! :-) Platforms tested: FreeBSD 4.11 (sleipnir) NEC SX-6 (by Elena)
* [svn-r11095] Purpose:James Laird2005-07-212-15/+53
| | | | | | | | | | | | | | | | | | | | | | Configuration feature Description: Serial test output is now stored in log files and printed when all tests in a directory complete, or when a test fails. This should make test output more readable and useful. Also made changes to clean up ii_files directories that are created by some C++ compilers/linkers. Also fixed a few minor Makefile bugs. Solution: When serial tests run, their output is saved in *.log or *.logsh. While running, tests only print when they begin and when they complete; their more specific output (from the log file) is printed if the test fails or when all tests have completed. Comments welcome. Platforms tested: mir, modi4 (parallel and serial), copper, shanti
* [svn-r11085] Purpose:James Laird2005-07-191-22/+0
| | | | | | | | | | | | | | | Bug fix Description: Update Makefiles now that docs are no longer in main hdf5 tree. Solution: Changed root-level Makefile.am not to recurse into docs tree. Removed docs Makefiles from configure.in. Removed config/commence-doc.am, since it is no longer used. Platforms tested: mir (change to Makefiles only)
* [svn-r11083] Purpose:James Laird2005-07-181-4/+6
| | | | | | | | | | | | Bug fixes Description: A number of minor changes to Makefiles. Some files will now be cleaned properly, some comments are more informative, etc. Platforms tested: heping, mir, modi4
* [svn-r11081] Snapshot version 1.7 release 48HDF Admin2005-07-181-1/+1
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* [svn-r11066] Purpose:MuQun Yang2005-07-121-1/+15
| | | | | | | | | | | | | | | | | | | Updating phase 2 work of collective IO Description: When the size is bigger than some value for MPI derived data type, mpich 1.2.5 and lower version won't work any more, so in the configuration file, we will check the version number and switch from collective IO to independent IO by turning off complex derived datatype. Solution: Platforms tested: linux 2.4, AIX 5.1, Linux 2.4 IA64 and IRIX 6.5 Misc. update:
* [svn-r11065] Purpose:MuQun Yang2005-07-121-0/+17
| | | | | | | | | | | | | | | | Updating phase 2 work of collective IO Description: When the size is bigger than some value for MPI derived data type, mpich 1.2.5 and lower version won't work any more, so in the configuration file, we will check the version number and switch from collective IO to independent IO by turning off complex derived datatype. Solution: Platforms tested: linux 2.4, AIX 5.1, Linux 2.4 IA64 and IRIX 6.5 Misc. update:
* [svn-r11052] Purpose:Albert Cheng2005-07-081-2/+5
| | | | | | | | | | | improvement. Description: make the adding of -xopnemp=stabs linking flag only when enable-fortran is set. Platforms tested: Tested in shanti only.
* [svn-r11051] Purpose: MaintenanceElena Pourmal2005-07-081-0/+7
| | | | | | | | | | | | | | | Description: -xopnemp=stabs linking flag is needed on Solaris 2.9 in order to build Fortran library. Solution: Added the flag to LDFLAGS if system version is 5.9 I don't really like the fix since this flag is now always added for 5.9 systems even if Fortran is not enabled. If someone has a better solution, please let me know :-) Platforms tested: shanti, sol Misc. update:
* [svn-r11046] Purpose: MaintenanceElena Pourmal2005-07-071-2/+0
| | | | | | | | | | | | Description: Removed -DH5_ABSOFT flag for C compiler when Absoft f95 compiler was used; this flag is not needed anymore since we automatically construct names of C functions called from Fortran. Solution: Platforms tested: pommier Misc. update:
* [svn-r11042] Purpose:Quincey Koziol2005-07-071-7/+7
| | | | | | | | | | | | | | | | | | Bug fix Description: The ".chksh" file for a test script was being created in the "source" location rather than the build location. This can cause problems when multiple builds are running because "slower" machines will see the ".cshsh" file from faster machines and will not run the test script as they should. Solution: Use 'basename' command to strip off the path of the script and create the ".chksh" file in the build location. Platforms tested: FreeBSD 4.11 (sleipnir) h5committest
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