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* Add support for AOCC & Flang w/ the Autotools (#3674)Dana Robinson2023-10-153-0/+143
| | | | | | | | | | | | | * Adds a config/clang-fflags options file to support Flang * Corrects missing "-Wl," from linker options in the libtool wrappers when using Flang, the MPI Fortran compiler wrappers, and building the shared library. This would often result in unrecognized options like -soname. * Enable -nomp w/ Flang to avoid linking to the OpenMPI library. CMake can build the parallel, shared library w/ Fortran using AOCC and Flang, so no changes were needed for that build system. Fixes GitHub issues #3439, #1588, #366, #280
* Address nagfor exceptions stoppage. (#3658)Scot Breitenfeld2023-10-112-2/+7
| | | | | | | * added cmake ieee flag for nagfor * generalized determining the nag compiler * fixing some misc. NAG warnings
* Use real URLs and updated names for plugins (#3651)Allen Byrne2023-10-102-40/+47
| | | * synchronize TGZ naming convention/usage
* Switch IEEE flags for NAG Fortran (#3644)Dana Robinson2023-10-091-5/+4
| | | | | | Default is -ieee=stop, which causes problems when the H5T module performs floating-point type introspection. The new mode is -ieee=full
* Remove old EXTERNALPROJECT_ADD in favor of FETCH_CONTENT (#3624)Allen Byrne2023-10-045-166/+30
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* Fix several spelling/grammar issues (#3621)jhendersonHDF2023-10-031-1/+1
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* Develop tools move (#3580)Allen Byrne2023-09-261-1/+1
| | | Reorganizes the tools files to support the VOL tests
* Fix windows cpack with debug (#3525)Allen Byrne2023-09-111-1/+1
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* Fix some minor formatting for consistency (#3499)Allen Byrne2023-09-056-27/+27
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* Fix the Fortran include dir in install config files (#3454)Allen Byrne2023-09-021-2/+3
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* Output stderr file in CMake testing on failure (#3431)jhendersonHDF2023-08-261-0/+4
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* Convert some H5MM calls to standard C equivalents (#2382)Dana Robinson2023-08-251-0/+1
| | | | | | | | | * H5MM_calloc and malloc are now mapped to stdlib C calls * H5MM_memcpy now maps directly to memcpy in release builds * H5MM_memcpy is still implemented as a separate function that checks for buffer overlap when H5MM_DEBUG is defined (default w/ debug builds) * Switches many library memcpy calls to use H5MM_memcpy * Fixes a possible zero allocation in H5Olayout.c
* Re-enable SZIP default to ON in CMake (#3414)Allen Byrne2023-08-232-7/+3
| | | The Autotools were handled in a separate commit
* Update presets, examples uncompress, szip cache (#3391)Allen Byrne2023-08-182-2/+6
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* Correct script (#3377)Allen Byrne2023-08-161-1/+1
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* set H5_PAC_C_MAX_REAL_PRECISION default to 0 when cross sompiling with (#3364)Larry Knox2023-08-091-11/+13
| | | CMake to fix Fortran build failures.
* CMake: (fix) Threads dependency (#3267)Jan-Willem Blokland2023-07-241-0/+5
| | | | | | - If the HDF5 library has been build with either thread-safety or subfiling VFD feature on it will have an additional dependency on a threading library. This dependency has been added to the hdf-config.cmake.in file.
* removed the use of encoded single apostrophe (#3261)Scot Breitenfeld2023-07-201-1/+1
| | | | | | * removed the use of encoded single apostrophe, and fix H5Dread_chunk from write to read * updated sanitizer paragraph * fixed brief description for H5Fget_info
* Option changed but not all references (#3252)Allen Byrne2023-07-181-2/+2
| | | | | * Option changed but not all references * remove quotes from binary var
* Fix some warnings in developer builds (#3247)jhendersonHDF2023-07-183-2/+29
| | | | | * Fix some warnings in developer builds * Switch approach to Winline flag
* Fix CMake builds when Subfiling VFD isn't enabled (#3250)jhendersonHDF2023-07-171-0/+1
| | | | | * Fix CMake builds when Subfiling VFD isn't enabled * Add Subfiling VFD entry to hdf5-config.cmake.in
* Subfiling VFD source cleanup (#3241)jhendersonHDF2023-07-132-0/+18
| | | | | | | | | | | | | | | | * Subfiling VFD source cleanup Modularize Subfiling CMake code into separate CMakeLists.txt file Update Mercury util code to latest version and update Copyright Generate mercury_util_config.h header file instead of using pre-generated file Remove unnecessary Mercury functionality Fix minor warning in Subfiling VFD code * Remove Mercury headers from Autotools publicly-distributed header list
* Adjust presets timeout and fix build script VS versions (#3215)Allen Byrne2023-06-302-8/+8
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* Remove checks for setsysinfo, which is unused (#3205)Dana Robinson2023-06-292-4/+0
| | | | * Autotools * CMake
* chore: fix grammar (#3207)H. Joe Lee2023-06-291-1/+1
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* Many fixes to various compiler warnings (#3124)Sean McBride2023-06-192-3/+3
| | | | | | | | | | | * Fixed various -Wmissing-variable-declarations by adding static keyword * In a few cases, renamed the variable suffix from _g to _s. * Fixed some -Wmissing-variable-declarations by using different declaration macros * Fixed various -Wconditional-uninitialized warnings by just initializing variable to zero * Fixed various -Wcomma warnings * Fixed clang -Wstrict-prototypes warnings * Fixed various -Wunused-variable warnings * Updated some casts to fix the only 3 -Wcast-qual warnings * Fixed the only -Wsometimes-uninitialized warning
* CMake: (feature) ROS3 and cmake config file. (#3146)Jan-Willem Blokland2023-06-161-0/+1
| | | | | - Added a cmake variable to the hdf5-config.cmake file which indicate if the library has been build with or without the read-only S3 functionality.
* Revert long double checks (#3133)Dana Robinson2023-06-153-0/+403
| | | | | | | * Revert "Remove long double conversion work-arounds (#3097)" This reverts commit 1e1dac1dac58fa18f6b7788346d1ba7d3315b0f9. * Update comments to reflect newer systems
* Remove unused HD macros (#3120)Dana Robinson2023-06-142-23/+0
| | | | | | | | | * Remove unused HD macros The library prefixes most C and POSIX API calls with 'HD'. We are going to start removing these so the code looks like normal C. This PR removes most of the unused HD markup macros. * Replace ntohl/ntohs
* Use 1.14 toolchain (#3116)Allen Byrne2023-06-131-4/+4
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* Remove H5detect and H5make_libsettings (#3104)Dana Robinson2023-06-131-15/+17
| | | | | | | | Removes H5detect and H5make_libsettings from the build and replaces their functionality with things that don't affect cross-compiling. H5detect --> floating-point types are now detected on library load H5make_libsettings --> Moved functionality to a new H5build_settings.c template file
* Rework tools.cmake and add C flags (#3110)Allen Byrne2023-06-131-73/+62
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* Remove long double conversion work-arounds (#3097)Dana Robinson2023-06-123-400/+0
| | | | | | | | | | | | | | | | | | | | | Several options and public symbols that were provided to paper over non-standard long double conversions between signed/unsigned long and long long values were removed from the Autotools and CMake. These were added twenty years ago, when C99 and 64-bit platforms were less common and are no longer needed. Autotools: --enable-dconv-accuracy CMake: HDF5_WANT_DATA_ACCURACY H5pubconf.h symbols: H5_WANT_DATA_ACCURACY H5_LDOUBLE_TO_LONG_SPECIAL H5_LONG_TO_LDOUBLE_SPECIAL H5_LDOUBLE_TO_LLONG_ACCURATE H5_LLONG_TO_LDOUBLE_CORRECT H5_DISABLE_SOME_LDOUBLE_CONV
* Remove variable dereferences in CMake (#3080)Dana Robinson2023-06-121-3/+3
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* Make some changes to configure.ac to suppor MinGW (#3096)Dana Robinson2023-06-121-2/+2
| | | | | | | Adds some H5pubconf.h entries and cpp flags for building on MinGW using the Autotools. Also updates the Windows-related H5pubconf.h comments to be more accurate in CMake.
* Don't use -fstdarg-opt with clang-tidy (#3079)Dana Robinson2023-06-071-1/+3
| | | | | | | | | | | * HDFCompilerFlags: mask -fstdarg-opt with clang-tidy `clang-tidy` doesn't understand this `-f` flag and errors out. * Add helpful comment --------- Co-authored-by: Sean McBride <sean@rogue-research.com>
* Removes old header/library checks (#3078)Dana Robinson2023-06-072-20/+0
| | | | | | | | | | | | | In both CMake and the Autotools, remove checks for: * lstat * srandom In CMake, remove checks for: * string.h * strings.h * stdlib.h We assume these exist. Configure will always check for them (we don't add any special code to do this), but there's no reason to duplicate that nonsense in CMake.
* correct warning ignore match for zlib (#3021)Allen Byrne2023-05-261-0/+2
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* Correct name of fetch content variable name (#3020)Allen Byrne2023-05-261-1/+1
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* Fix multiConfig variable usage and remove unused CMake vars (#3013)Allen Byrne2023-05-253-21/+1
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* Update GitHub macOS actions to v13 (#2999)Dana Robinson2023-05-244-0/+11
| | | | | * Update macOS to 13 * Fix the DYLD_LIBRARY_PATH issue on macOS 12 & 13 + CMake that caused the accum test to fail
* Fix plugin cache variable name (#2988)Allen Byrne2023-05-222-11/+11
| | | | * Fix plugin cache variable name * Prefix plugin project local variables
* Change defaults of standard filters. (#2927)Allen Byrne2023-05-183-10/+6
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* Fix CMake generator expression syntax (#2909)Allen Byrne2023-05-051-3/+3
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* remove obsolete SZIP find module (#2901)metadata_cache_macro_cleanupAllen Byrne2023-05-051-127/+0
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* Force lowercase Fortran module file names (#2891)Scot Breitenfeld2023-05-041-0/+6
| | | | | * fixed args in execvp for h5fuse * Force lowercase Fortran module file names for Cray compilers
* Changes to isolate API Test option files and use fetchcontent (#2880)Allen Byrne2023-05-031-0/+11
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* Remove duplicate variable for configuration use (#2870)Allen Byrne2023-05-011-11/+8
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* Correct usage of CMAKE_BUILD_TYPE (#2863)Allen Byrne2023-05-013-15/+15
| | | Fixes a problem when using multi-config builds with the CMake GUI
* Correct compression install files (#2838)Allen Byrne2023-04-282-8/+22
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