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* [svn-r15605] The MPI compiler(mvapich2-0.9.8p2patched-intel-ofed-1.2) at ↵MuQun Yang2008-09-081-1/+3
| | | | | | | | | NCSA's linux cluster(Abe) fails to handle collective IO calls with very complicate MPI derived datatype. All the values of input parameters from HDF5 are correct before passing to MPI-IO collective calls. Sometimes the following errors happen: rank 0 in job 77 honest1.ncsa.uiuc.edu_60945 caused collective abort of all ranks exit status of rank 0: killed by signal 9 Up to this point, we decide to turn off the use of advanced MPI derived datatype features inside HDF5 so that complicated selection tests are ensured to be handled by HDF5. This check-in reflects this.
* [svn-r15376] Description:Quincey Koziol2008-07-161-2/+2
| | | | Bump shared library version # for change to H5G_info_t struct
* [svn-r15214] Description:Quincey Koziol2008-06-131-4/+55
| | | | | | | Fix gcc 4.2 flag that was put in gcc 4.1 section Tested on: Eyeballed & man pages
* [svn-r15212] Description:Quincey Koziol2008-06-131-15/+66
| | | | | | | | | | | Bring back revision 15211 from trunk: Update the gcc flags for version 4.3 Clean up warnings Tested on: Mac OS X/32 10.5.3 (amazon)
* [svn-r15068] Maintenance: used h5vers script to change version number to ↵Elena Pourmal2008-05-221-1/+1
| | | | | | 1.8.1-rc1 before creating a tar ball for remote testing
* [svn-r15042] Bug fix.Albert Cheng2008-05-201-4/+4
| | | | | | | | | | | | | | | | | | | Description: The fortran Makefile.am used HDF_FORTRAN to indicate it is part of the Fortran API source so that conclude.am will give fortran api prefix in the test output. The symbox HDF_FORTRAN is also used in configure for a different purpose (indicated --enable-fortran). They conflicted. Similar problem for the symbol HDF_CXX. Solution: Changed all the involved Makefile.am to use "FORTRAN_API" instead. It is a more appropriate name. Same for CXX_API. Along the way, discovered that the Makefile.am of hl/fortran/test and hl/cxx/test did not have those symbols at all. Added them in. Platform tested: Kagiso serial and h5committested (kagisopp, smirom, linew).
* [svn-r15006] Purpose: configure cleanupMike McGreevy2008-05-151-9/+5
| | | | | | | Description: cleaning up configure related to removal of --disable-hsizet flag, which we no longer support. Tested: kagiso
* [svn-r14942] Maintenance: Merged new Fortran APIs and tests from trunk into ↵Elena Pourmal2008-05-061-3/+3
| | | | | | | | | | | hdf5_1_8 branch (used svn merge -r 14505:14941 http://svn.hdfgorup.uiuc.edu/hdf5/trunk/fortran command). Updated MANIFEST Disabled -O3 optimization for gcc 4.3 (long due check-in) Platforms tested: kagiso with PGI compilers, smirom with g95 and v16 option, linew
* [svn-r14463] Purpose: Updating shared library version number for 1.8.0 release.Mike McGreevy2008-01-281-3/+3
| | | | | | | | | | | Description: config/lt_vers.am was updated as follows due to changes in API since last version update: LT_VERS_INTERFACE = 5 LT_VERS_REVISION = 0 LT_VERS_AGE = 0 Tested: kagiso
* [svn-r14096] There're 3 changes in this checkin as below:Raymond Lu2007-08-201-0/+10
| | | | | | | | | | | | | | | | | | 1. In H5Dwrite and H5Dread, let the data buffer point to a fake address if the application passes in an empty buffer. This is mainly for MPIO programs that some processes may not have any data to write or read but still participate the I/O. This solution solves some MPI's problem like the ChaMPIon on tungsten which doesn't support empty buffer. 2. The ChaMPIon on tungsten doesn't support complex derived MPI data type correctly and collective I/O when some processes don't have any data to write or read correctly. Detect the compiler "cmpicc" in the system-specific config file and set the variables for these two cases to false. The PHDF5 library already has set up a way to switch collective chunked I/O to independent under these two cases. 3. A bug fix - During the work of the optimization for compound data I/O, the case for switching collective chunked I/O to independent I/O was leftout. Fixed it by adding I/O caching to it in H5D_multi_chunk_collective_io in H5Dmpio.c. Tested on tungsten, cobalt, and kagiso for parallel; on linew and smirom for serial.
* [svn-r13939] Problem: High level of optimazation causes test failures when ↵Elena Pourmal2007-07-051-0/+3
| | | | | | | | | | library is built with Intel 10.0 compiler. Solution: Use -O1 optimization flag with Intel 10.0 Platforms tested: abe and kagiso with Intel 10.0 and Intel 9.1 compilers; no committest is needed since this is a compiler specific change.
* [svn-r13934] Description:Quincey Koziol2007-07-031-0/+0
| | | | | | | | Rename Mac OS X compiler configuration file to more generic name, which should allow Intel Macs to configure better. Tested on: Mac OS X/32 10.4.10 (amazon)
* [svn-r13899] Maintenance: Deleted configuration files for unsupported HP ↵Elena Pourmal2007-06-232-116/+0
| | | | | | platforms. No testing is needed.
* [svn-r13736] Bug fix.Albert Cheng2007-05-071-2/+5
| | | | | | | | | | | | QSC's mpi implementation does not do collection I/O correctly. Need to turn some collective support off. Tested platform: LANL QSC. -This line, and those below, will be ignored-- M config/dec-osf5.x
* [svn-r13418] Cleaned up some old paths in config/commence.am and removed ↵James Laird2007-02-272-7/+7
| | | | | | | | some comments in the template file config/Makefile.am.blank. This is just a cleanup checkin. Tested on kagiso.
* [svn-r13379] Added 'make help' target. This actually runs a script, ↵James Laird2007-02-231-1/+4
| | | | | | | | bin/makehelp (formatting the output in the makefile was pretty hard). Tested that make still works on kagiso; no code changes at all.
* [svn-r13375] Description:Quincey Koziol2007-02-222-6/+6
| | | | | | | | | | Straighten out some of the code for handling superblocks, in preparation for revising the format of the latest version of the superblock before the beta release. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13365] Bug fix.Albert Cheng2007-02-214-36/+57
| | | | | | | | | | | | Description: Multiple copies of Copyright appeared in Makefile.in. This was due to automake copying the copyright right in the included files such as config/commence.am. Solution: Automake treats double hashes as comments and does not copy them to Makefile.in. Changed all the copyright notices in config/*.am to use double hashes for the Copyright right notice. Tested: kagiso via bin/reconfigure.
* [svn-r13359] Fixed a bug where the -shlib flag for h5cc would end up on the ↵James Laird2007-02-201-5/+5
| | | | | | | | Dependency line in the Makefile. Makefile change only. Tested on kagiso, to be used to test on cobalt.
* [svn-r13324] Changed the default Fortran compiler for gcc from pgf90 to g95.Albert Cheng2007-02-171-2/+6
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* [svn-r13312] Updated copyright notice.Albert Cheng2007-02-1447-130/+177
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* [svn-r13181] Added a configure check to prevent a failure on Cygwin.James Laird2007-01-231-1/+0
| | | | | | | | | | | | | | It seems that while Cygwin supports the time command, it has trouble with the syntax srcdir="../../hdf5/test" time ./testhdf5 and complains. The solution is to test the above case in configure and not to use the time command if it fails; Cygwin is fine with srcdir="../../hdf5/test" ./testhdf5 Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility problem since every platform but Cygwin is already fine with the current syntax.
* [svn-r12961] Upgrade.Albert Cheng2006-11-211-2/+2
| | | | | | | | | Change AIX to use C99 standard by default. Also removed -DSTDC as its need is unknown. Also added a line to identify this is for IBM AIX platforms. Tested: Copper.
* [svn-r12887] A fix for linking issues.James Laird2006-11-101-0/+5
| | | | | | | | | | | | Should disable linking against shared libraries in Fortran for compilers that don't support shared libraries. Should also fix problem when the wrong Fortran file extension was specified. If these changes don't solve the Daily Test issues, I'll look at backing out the autotool version change until I have time to fix them. Tested on heping, kagiso, juniper.
* [svn-r12787] Fix some references to Variable-length packet table functions.James Laird2006-10-191-0/+9
| | | | | | | For some reason, only Visual Studio DLLs complained about these. Current code compiles for me under Visual Studio and generates no related warnings on juniper.
* [svn-r12765] Description:Elena Pourmal2006-10-162-3/+3
| | | | | | | | | | Daily tests failed for Absoft f95 compiler Solution: Failure was due to several typos in H5f90prpto.h file; fixed I also removed redundant flags from the configration files. Platforms tested: heping with f95, g95, pgf90; pommier with f95
* [svn-r12669] Description:Quincey Koziol2006-09-151-0/+6
| | | | | | | | Use a slightly less efficient method of computing the log2() on SGI IRIX64, in order to avoid a compiler bug when optimizations are turned on. Tested on: SGI IRIX64 6.5 (atlantia)
* [svn-r12640] Frank Baker2006-09-041-0/+16
| | | | | | | | Description: Add per-directory abbreviated copyright notices (abbreviated COPYING files pointing to full notices). Tested: MANIFEST verified; not otherwise tested.
* [svn-r12636] Purpose:Albert Cheng2006-08-291-5/+20
| | | | | | | | | | Improve default settings. Use mpicc, mpif90, mpirun as the default $CC, $FC, and $RUNPARALLEL if enable-parallel. Tested: in TG-NCSA both serial and parallel.
* [svn-r12609] Description:Quincey Koziol2006-08-221-6/+30
| | | | | | | | | | Comment out the use of the "-Wpadded" flag, it's generating far too many warnings that are impossible to correct and probably making it harder to see other warnings that are more important. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12608] Checked in External Link C examples.James Laird2006-08-221-1/+1
| | | | | | | | Since these examples need to follow filesystem paths, the Makefiles need to create directories in the examples directory; added this to the Makefile.am. Tested on Windows, mir, juniper
* [svn-r12584] Mentioned VFD in test output to make it easier to tell which ↵James Laird2006-08-171-7/+6
| | | | | | | | | VFD is being used when a test is run. Running reconfigure also regenerated error header files (because someone edited them manually?).
* [svn-r12579] Description:Elena Pourmal2006-08-151-1/+5
| | | | | | | | | | | -O3 flag causes compilation problems on most of the platforms with Intel compiler. The problem exists in all vesrions of icc compiler up to the newest 9.1 Solution: Use less agressive default setting O2 to avoid headache Platforms tested: Linux 2.6 ia64 at UCAR (hal), cobalt (NCSA)
* [svn-r12519] Fixed "make check-vfd"James Laird2006-07-311-2/+3
| | | | | | | | | | "make check-vfd" will now run all tests in the test directory with different file drivers (at least, all of those tests that use the testing framework's FAPL). Tests that fail will be skipped. This is not a perfect fix, but is better than nothing. Along with this change, check-vfd should be added to the Daily Tests.
* [svn-r12434] Purpose: MaintenanceElena Pourmal2006-06-221-0/+95
| | | | | | | | | | | | Description: Added support for HPUX11.23 Solution: Added configuration file for the system. Both C, C++, F90, HL 32-bit and 64-bit are supported. Known problems: C++ library will not build in 64-bit mode if shared is enabled. Platforms tested: HPUX 11.23 at UMKC Misc. update:
* [svn-r12431] Purpose:James Laird2006-06-212-17/+17
| | | | | | | | | | | | | | Configuration feature Description: 'make install' now tests both static and shared libraries if both are installed. Solution: Previously, shared libraries were only tested when static libraries were not installed. Also cleaned up line in commence.am that was including HL library in all Makefiles. Platforms tested: mir (Makefile change only)
* [svn-r12344] Purpose:Albert Cheng2006-05-121-1/+4
| | | | | | | | | | | | | | | | | | | | Bug fix. Description: C++ testhdf5 failed when it tried to inspect the size of a file via the HDstat call. The reason was that the CFLAGS has -D_LARGE_FILES hardset in it while the CXXFLAGS does not. So, C is using an off_t that is 8 bytes while C++ is using off_t as 4 bytes. C is using a version of 64bits stat/off_t/etc while C++ uses the 32 bits version. Thus a failure. Solution: Added -D_LARGE_FILES to $CXXFLAGES so that both C and C++ are using the same version of stat/off_t/etc. Platforms tested: Tested in Copper only, both 32 and 64 bits since the changes affected the AIX platform only.
* [svn-r12329] Purpose:MuQun Yang2006-05-041-1/+4
| | | | | | | | | | | | | | | | | work-around solution for special cases in collective IO Description: For collective IO if some processes don't have any contributions to IO, even with the new SGI compiler(7.4.4m), the testing program will be hanged. Previously only thought it didn't work with old compiler. It turned out not to be true. Solution: Turned off the special flag: H5_MPI_SPECIAL_COLLECTIVE_IO_WORKS Platforms tested: UCAR IRIX 6.5 this file only affects IRIX 6.x system. No need to test at other platforms. Misc. update:
* [svn-r12325] James Laird2006-05-032-7/+8
| | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: The Daily Test errors were due to H5_CFLAGS not being included when configure tested the sizes of some values. Rolled back the offending changes. Solution: There is a "correct" solution to this problem, which is to ensure that the H5_CFLAGS are included in autoconf's tests. This rollback is only temporary until the "real" fix can be applied. Platforms tested: copper (problem only in aix config file)
* [svn-r12318] James Laird2006-05-016-22/+25
| | | | | | | | | | | | | | | | Purpose: H5CC feature Description: Made H5_CFLAGS change to several more configuration files. Solution: Moved nonessential flags from CFLAGS to H5_CFLAGS for several more platforms. If my guesses about which flags were nonessential were wrong, we'll have Daily Test errors. Platforms tested: mir, cray, copper, juniper (OS X)
* [svn-r12312] Purpose:James Laird2006-04-281-2/+2
| | | | | | | | | | | | | | | | H5_CFLAGS change Description: Made the threadsafe flags in config/freebsd H5_CFLAGS so that they are not passed on to h5cc. Solution: If user applications need the threadsafe flag to link properly against the threadsafe HDF5 library, we'll see linking errors in make-install when threadsafe is enabled, and can revert this change. Platforms tested: mir only (very minor change)
* [svn-r12302] Purpose: MaintenanceElena Pourmal2006-04-251-4/+4
| | | | | | | | | | | | | Description: In the past we had Fortran support only for 64bit mode on IRIX64-6.5. This feature was hardcoded in the IRIX configuration file. New automatic Fortran datatypes configuration should support both 32bit and 64bit modes. I finally verified that it worked. Solution: Removed -64 flag from the configuration file. Platforms tested: UCAR IRIX64-6.5 in 32 and 64bit modes. Misc. update:
* [svn-r12301] Purpose:James Laird2006-04-257-54/+54
| | | | | | | | | | | | | | H5_CFLAGS change Description: Converted a few platforms to use H5_CFLAGS to "test the waters" Solution: Modified a few config/* files to use H5_CFLAGS for non-essential flags. Platforms tested: mir, heping
* [svn-r12295] Purpose:James Laird2006-04-212-5/+5
| | | | | | | | | | | | | | | | | | | Several bug fixes Description: Added config file for Cray X1 (previous file was misnamed) Simplified some code in hyperslab.c test that seemed to have been confusing compiler on Cray X1. Fixed typo in config/commence.am Cleaned up hl/src/Makefile.am Solution: All four fixes should be straightforward. The failure on Cray was very difficult to debug, but involved arithmetic errors. This change seems to fix it. Platforms tested: heping, copper, sol, some Cray X1 (more testing when system comes back up)
* [svn-r12276] Purpose: Maintenance/typo fix/1.8.0-alpha0 releaseElena Pourmal2006-04-181-1/+1
| | | | | | | | | | | | | | | | | | | | | | Description: Here is what I did: modified MANIFEST according Quincey's instructions to fix the problem exposed by bin/release (compilation fails because some header files were not included in the distribution) fixed small typo and modified include_HEADERS line in src/Makefile.am to address the problem exposed by bin/release ran bin/h5vers to change version number to 1.8.0-alpha0 ran bin/release to release tar ball to the ftp server Solution: Platforms tested: mir MANY,MANY,MANY times Misc. update:
* [svn-r12229] Purpose:Pedro Vicente Nunes2006-04-121-0/+3
| | | | | | | | | | | | | | | | | | | | | new feature Description: 1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library 2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in) 3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h Solution: Platforms tested: linux 32, 64 AIX solaris with fortran and c++ (one packet table example fails) Misc. update:
* [svn-r12154] Purpose:James Laird2006-03-241-2/+8
| | | | | | | | | | | | | | | Removed -march flag Description: The -march optimization flag is bad in some circumstances Solution: Prevented HDF5 from adding the -march archicture-specific optimization flag, so that users could have one version of HDF5 used by several different machines. Platforms tested: heping (one of the few platforms that affected by this small change)
* [svn-r12149] Purpose:James Laird2006-03-232-7/+1
| | | | | | | | | | | | | | | | Bug fix Description: Previous checkin did a bad thing; 'make clean' failed in example directories. Solution: Fixed commence.am so that examples no longer break, and fixed a mistake in conclude.am. Platforms tested: heping (minor makefile change) Misc. update:
* [svn-r12143] Purpose:James Laird2006-03-231-0/+4
| | | | | | | | | | | | | | Bug fix Description: make check-clean didn't clean results of example tests Solution: Fixed Makefiles so that check-clean recurses into example directories. Also a little Makefile cleanup. Platforms tested: mir, modi4, heping, copper
* [svn-r12083] Snapshot version 1.7 release 58HDF Admin2006-03-131-1/+1
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