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* [svn-r1061] Adjusted for v1.1 new configuration.Albert Cheng1999-02-101-1/+11
| | | | | | Hard coded against intN_t types. They are not supported by Intel Red but configure thinks they are by default for cross-compiler. (Need a better solution for this.)
* [svn-r1057] Updated gcc flags for 2.7.x compilersQuincey Koziol1999-02-031-1/+1
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* [svn-r1049] Corrected a typo in the definition of $AR.Albert Cheng1999-02-021-1/+1
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* [svn-r1037] All IRIX (old 32bit OS) version 6.x can use the same configuration.Albert Cheng1999-01-291-0/+0
| | | | Replaced irix6.2 by irix6.x.
* [svn-r1036] Updated compiler flagsQuincey Koziol1999-01-282-4/+4
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* [svn-r1024] Purpose:Paul Harten1999-01-191-18/+19
| | | | | | | | | | | | | | | Bug fix Problem: When -with-hdf4 option is selected during configure, no machine type found for HDF4 header file hdfi.h. Solution: Modify hdf5/config/linux file: -D__i386 to be added to CPPFLAGS. Platform tested: linux(penfold)
* [svn-r971] Changes since 19981214Robb Matzke1998-12-171-4/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added warning that enabling debugging code can adversely affect performance even when the debugging isn't turned on at run-time. Performance testing shows that under certain circumstances (like data type conversions of compound types) the H5_timer functions, although only a few lines each, contribute a fairly large percent to the execution time. ./src/H5T.c ./src/H5Tpkg.h ./src/H5Tpublic.h Improved the H5Tunregister() function to make unregistering more flexible. It takes the same arguments as H5Tregister() but also accepts wild cards. All conversion functions that match the H5Tunregister() search criteria are removed from the global type conversion table. The H5Tregister_hard() and H5Tregister_soft() were combined into a single function called H5Tregister() which is the counterpart to H5Tunregister(). A new `persistence' argument was added to differentiate between the two types of conversion functions. The application is allowed to register a hard conversion function for the no-op conversion path although the library isn't obligated to call it (it usually does). This is mostly for completeness, but the application might use it to help determine if the raw data pipeline was able to use the optimized path for the case when no type conversion is necessary. The library doesn't allow this path to be unregistered although the application can redefine it as often as it likes. Fixed the type conversion tables in preparation for MT-safety and to fix previosly-known design bugs wrt. unregistering conversion functions or changing the C function associated with a conversion path. The MT-safety stuff is documented in a separate white paper. Increased the conversion function debugging name from 9 characters to 31 characters so the output can be more descriptive. Moved conversion path statistics from the H5T_cdata_t member into the conversion path itself. This makes H5T_cdata_t contain only application-visible data structures. ./src/H5A.c ./src/H5D.c ./src/H5Ofill.c ./src/H5P.c ./src/H5T.c Improved the way type conversion functions are called so the caller doesn't have to check for data type debugging and increment type conversion timers and statistics. Changed check for no-op conversion since it is now application-definable and there may even be more than one definition at a time in a multi-threaded application (one thread might be using the no-op conversion path when some other thread changes its definition -- the first thread still sees the original defintion until it's done with the operation). ./doc/html/Datatypes.html Updated the user guide to reflect the changes to data type conversion registration functions. ./bin/trace ./src/H5.c Added tracing support for the new H5T_pers_t data type. ./test/dtypes.c Added printf to display alignment value if non-aligned data types are being tested. ./test/h5test.c Modified the H5Tunregister() calls to use the new arguments. All 94 of those calls can be replaced by a single call to the new H5Tunregister() function. ./src/H5.c Added HAVE_GETTIMEOFDAY around an auto variable and initialized the elapsed time to zero when gettimeofday() is not available. ./src/H5F.c ./src/H5Fprivate.h ./src/H5P.c Added an H5*_init() functions which do the same thing as H5*_init_interface() but can be called from other packages and don't do anything if the interface is already initialized. This fixes a couple memory leaks in applications that repeatedly close and open the library with H5close(). ./src/H5Tconv.c Optimized some data alignment code in the hardware conversion functions. Hardware conversions accumulate statistics about source and destination data alignment and print that information when the conversion function is unregistered (usually when the application exits) if data type debugging is compiled into the library and enabled at run-time. The conversion caching was cleaned up for the compound data type conversion function. It now caches conversion paths in a manner that will be MT-safe and is much simpler than the old method. Also cleaned up some array index maps. ./src/H5detect.c Fixd mispelling of alingemnt. ./src/H5private.h Changed `TRUE' to `1' in assignment to interface_initialize_g in FUNC_ENTER macro definition. ./tools/testh5dump.sh Completely rewritten to make it shorter, better documented, and conforming to most of the other test outputs. The comparison of the actual output with the expected output is insensitive to differences in white space. The test now passes for the first time on Linux where the output width wasn't as expected but the output was otherwise correct. ./tools/testfiles/tall-1.ddl ./tools/testfiles/tall-2.ddl ./tools/testfiles/tall-3.ddl ./tools/testfiles/tattr-1.ddl ./tools/testfiles/tattr-2.ddl ./tools/testfiles/tattr-3.ddl ./tools/testfiles/tattr-4.ddl ./tools/testfiles/tcomp-1.ddl ./tools/testfiles/tcomp-2.ddl ./tools/testfiles/tcomp-3.ddl ./tools/testfiles/tcomp-4.ddl ./tools/testfiles/tdset-1.ddl ./tools/testfiles/tdset-2.ddl ./tools/testfiles/tdset-3.ddl ./tools/testfiles/tdset-4.ddl ./tools/testfiles/tgroup-1.ddl ./tools/testfiles/tgroup-2.ddl ./tools/testfiles/tgroup-3.ddl ./tools/testfiles/tlink-1.ddl ./tools/testfiles/tlink-2.ddl ./tools/testfiles/tlink-3.ddl ./tools/testfiles/tlink-4.ddl ./tools/testfiles/tlink-5.ddl ./tools/testfiles/tslink-1.ddl ./tools/testfiles/tslink-2.ddl Changed `../h5dump' to just `h5dump'. ./config/alpha-dec-osf4.0 Added more warning and optimization switches to the native compiler.
* [svn-r928] Changes since 19981118Robb Matzke1998-11-191-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c ./src/H5Smpio.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpublic.h ./src/H5detect.c ./src/H5private.h ./src/H5public.h ./test/big.c The `long long' type isn't quite as prevalent as we had hoped; there is at least one system that defines `__int64' but not `long long'. Therefore, I've temporarily changed all occurrences of `long long' to `long_long' and then #define that in H5private.h based on the existence of `long long' or `__int64'. This gets rid of some #ifdef's in other parts of the code. The semantics of the hdf5 types are: *int8_t Exactly one byte *int16_t At least two bytes. We favor 32-bit integers over 16-bit integers if the 16-bit integer is 4-bytes wide (Cray) *int32_t At least four bytes. *int64_t At least eight bytes long_long The widest integral integer type The H5Smpio.c contains debugging code which is non-portable. ./tools/h5ls.c Changed the order native types are detected so we favor the name `int' over `short' or `long' if two of them are the same. ./config/conclude.in Added a rule to make test programs depend on the hdf5 library. This fixes a minor bug where changing H5detect.c and then running `make test' caused H5Tinit.c to not be recompiled and therefore the test files are not relinked.
* [svn-r915] Changed typo `cc' to `gcc'Robb Matzke1998-11-161-2/+2
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* [svn-r914] Changes since 19981113Robb Matzke1998-11-161-3/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/conclude.in ./test/Makefile.in ./tools/Makefile.in The Makefile $TESTS variable has finally been split into $TEST_PROGS and $TEST_SCRIPTS with the latter being the names of shell scripts that need to be run with `/bin/sh'. Now we don't have to copy each shell script before we run it. NOTE: THIS CHANGE DOES NOT AFFECT THE PABLO MAKEFILE SINCE THAT FILE IS A COPY OF A PREVIOUSLY GENERATED MAKEFILE. ./src/Makefile.in Added H5Snone.c to the source list. ./src/H5G.c Plugged a memory leak by emptying the object type "isa" table when the library is closed. ./src/H5Tconv.c ./src/H5Tpkg.h Added 48 new type functions to take advantage of hardware for integer type conversions. These functions are not registered in the conversion table yet because I haven't fully tested them. ./src/H5Tpkg.h Removed __unused__ qualifiers from prototypes.
* [svn-r907] Changes since 19981111Robb Matzke1998-11-1316-445/+284
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added instructions about specifying a path for GNU zlib and HDF4 headers and library. Added comments for each of the tool names. Added h5toh4 as a tool name. ./configure.in ./conigure [REGENERATED] ./src/H5config.h.in [REGENERATED] The config/* scripts get invoked with $CC_BASENAME set the base name of the compiler in order to make it easier to handle setting compiler flags for different compilers in a big case statement. For instance, if $CC has the value /usr/local/mpi/bin/mpicc -ansi -64 then $CC_BASENAME will be `mpicc'. The $CC_BASENAME is not set if $CC is not set. Fixed alignment in `configure --help'. An include and/or library path can be specified for GNU zlib if configure can't find it in normal places. The "normal" means wherever your compiler normally searches, including search paths you've added through environment variables like CPPFLAGS and LDFLAGS. The INSTALL file has instructions. The `-ljpeg' library is detected. If `ssize_t' is not found then a #define is added to H5config.h similar to what we already do for `size_t'. We detect the hdf5 header file `mfhdf.h' and libraries `-lmfhdf' and `-ldf' and if found define the H5TOH4 and TESTH5TOH4 Makefile variables. The user can specify an include and/or library path. The INSTALL file has instructions. The `RUNTEST' variable has been split into `RUNSERIAL' and `RUNPARALLEL' because these are different commands. The makefile still uses `RUNTEST', which defaults to the RUNSERIAL value. The new testpar/Makefile.in sets RUNTEST to the RUNPARALLEL value. The default RUNSERIAL value is empty and the default RUNPARALLEL value is `mpirun -np 2'. These can both be overridden in the config/* files. To make the value the empty string set it like `RUNPARALLEL=none' in the config/* file. The new testpar/Makefile is generated from testpar/Makefile.in ./config/commence.in Added the RUNSERIAL and RUNPARALLEL makefile definitions. ./src/Makefile.in The `H5detect' program is run with RUNSERIAL, which is empty on all platforms except intel-osf1 (ASCI/Red) ./config/conclude.in Removed the `.c.a:' implicit rule -- we don't use it any more. ./config/BlankForm ./config/alpha-dec ./config/alpha-dec-osf4.0 ./config/freebsd2.2.7 ./config/hpux10.20 ./config/hpux9.03 ./config/intel-osf1 ./config/irix5.3 ./config/irix6.2 ./config/irix64 ./config/linux ./config/powerpc-ibm-aix4.2.1.0 ./config/rs6000-ibm-aix4.1.4.0 ./config/solaris2.5 All of these files have been updated to hande multiple compilers. Most of them assume `cc' if CC is not set. The documentation in `BlankForm' has been updated and documentation in the other files refer to `BlankForm'. The intel-osf1 uses LDFLAGS instead of LIBS to specify the extra library search paths. ./examples/Makefile.in ./test/Makefile.in ./tools/Makefile.in Simplified by grouping some dependency information together more succinctly. The tools Makefile.in has been modified to work with the `h5toh4' and `testh5toh4' programs. Until Paul checks these in you may have problems compiling. If so, just create files h5toh4.c and testh5toh4.c that contain: #include <stdio.h> int main(int argc, char *argv[]) { fprintf(stderr, "%s: not implemented\n", argv[0]); return 1; } ./src/H5public.h Removed definition for `ssize_t' since this is now handled by configure in H5config.h with a #define. ./MANIFEST ./testpar/Makefile.in [NEW] Added a makefile for parallel tests. As soon as we get this working properly we can remove the other four makefiles in that directory and maintain just one.
* [svn-r903] Switched default compiler to be native compiler instead of gccQuincey Koziol1998-11-131-2/+2
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* [svn-r879] Changes since 19981105Robb Matzke1998-11-061-7/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./acconfig.h ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Added checks for functions, structs, constants, and header files used in h5ls.c to determine the output width with various Windows compilers and Unix variants. Added check for <sys/stat.h> and defined HAVE_SYS_STAT_H. Included <sys/stat.h> in H5private.h outside the Posix.1 #include's section. ./src/H5RA.c Less aggressive about failing -- rather returns false, which allows type detection to continue. ./src/h5ls.c Data types are displayed for datasets and named data types when `-v' or `--verbose' is specified on the command-line. The algorithm is a little different than the dumper because we're trying to be human-friendly, not necessarily machine-friendly. * Any data type which matches a native C type gets printed something like `native double'. * A floating point type that matches one of the IEEE standard types but not one of the native types gets printed like `IEEE 64-bit big-endian float'. * Other floating point values have information about sign bit location; exponent size, location, and bias; and significand size, location, and normalization. * Padding and offsets are displayed for types that have padding (precision != size), including internal padding for some floating point data types. * Non-native integer types are displayed like `32-bit little-endian unsigned integer'. * Compound data types have each member displayed including the member name, byte offset within the struct, dimensions, index permutation, and data type. * String types are displayed like `256-byte null-terminated ASCII string'. * References are displayed like `8-byte unknown reference' until the reference interface stabilizes a little. * All other types including types not yet defined will be printed like `4-byte class-9 unknown'. The dimensionality of scalar datasets is printed like `{SCALAR}' instead of just `{}'. If external raw files are used to store a dataset then the offsets, sizes, and file names of each are printed if `-v' or `--verbose' was given on the command-line. If an object is found and h5ls can't determine the object type then it still tries to print the number of hard links, the OID, and any comment that might be present if `-v' or `--verbose' was specified. If the `-d' or `--dump' switch is turned on then ragged arrays will report that the data can only be dumped by dumping the component datasets explicitly. I'm not planning to implement this since we're going to eventually change the whole way ragged arrays are stored. Compound data values do not have the component names displayed by default when `-v' or `--verbose' is turned on. Instead, the names can be displayed with `-l' or `--label'. The output width is determined by the first rule that applies: * If the `-wN', `-w N' or `--width=N' switch appeared on the command line then use N for the output width. * Query the OS for the tty width in a highly unportable way borrowed from GNU `less' depending on what functions and data structures were found during configuration (if any): _getvideoconfig(), gettextinfo(), _srcsize(), ioctl(), GetConsoleScreenBufferInfo(), struct videoconfig, struct text_info, the TIOCGWINSZ ioctl, the TIOCGETD ioctl. * If the `COLUMNS' environment variable is set then use its value. * Use the value 80. Just for kicks, run Mark and Jim's test_vbt and then say `h5ls -dlsv test.vbt'. You can also try it on the various *.h5 files in the test/example directories. ./config/linux Removed turning on parallel by default on Robb's macine.
* [svn-r845] Set it to use vendor provided cc compiler.Albert Cheng1998-10-301-0/+3
| | | | Updated developer version too.
* [svn-r815] Changed default compilation options for HPUX 9.xQuincey Koziol1998-10-281-2/+2
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* [svn-r812] Moved -fullwarn flag to be used for debug mode only.Albert Cheng1998-10-271-2/+2
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* [svn-r801] Added compiler options to suppress some warning messages fromAlbert Cheng1998-10-261-1/+9
| | | | the compiler and loader.
* [svn-r798] Suppress the warning that a certain library is not used duringAlbert Cheng1998-10-261-2/+4
| | | | | the loading. It would be hard to customerize library list for individual loading.
* [svn-r722] Updated FreeBSD config file for new version of OS on hawkwindQuincey Koziol1998-09-251-0/+0
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* [svn-r714] Changes since 19980911Robb Matzke1998-09-222-1/+39
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- This checkin is to fix a couple bugs for Jim Reus. Some features are not fully implemented but it shouldn't break anything. ./config/conclude.in ./test/Makefile.in `make clean' removes object files from the test directory as well as a couple more *.h5 temp files. ./config/hpux9.03 [NEW] New config file for HP/UX 9.03 ./src/H5B.c ./src/H5Bprivate.h ./src/H5Fistore.c ./src/H5G.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gstab.c Not-yet-complete version of object removal. ./src/H5Fistore.c ./src/H5Fprivate.h Experimental optimizations, disabled by default. ./src/H5Fprivate.h Default low-level driver was changed to H5F_LOW_SEC instead of H5F_LOW_STDIO because the sec2 driver is much easier to debug. ./src/H5Fsplit.c ./src/H5G.c ./src/H5Z.c Changed a couple return statements to HRETURN. ./src/H5Odtype.c Removed a check for nested compound data types from back when they weren't implemented that raised an error. ./tools/h5tools.c Increased temp buffer sizes and added a check for buffer overflow so we fail an assertion (hopefully). This really needs to be fixed sometime. Added support for printing H5T_STRING data types.
* [svn-r711] Updated flags for better production compilingQuincey Koziol1998-09-211-2/+2
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* [svn-r659] Fixed a parallel build problem; make -j should work again now.Robb Matzke1998-09-031-2/+6
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* [svn-r635] Changes since 19980831Robb Matzke1998-08-313-50/+213
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./Makefile.in Running `make distclean' will not fail if one of the subdirectories has already been cleaned. ./config/BlankForm ./config/irix5.3 Cleaned it up more. Added better support/documentation for systems that have more than one compiler. ./config/alpha-dec-osf4.0 [NEW] Added a new config file as a result of testing on Jim Reus's machine. ./test/chunk.c Scaled down the testing range so we can actually run it interactively. ./tools/h5import.c Included <unistd.h> to get rid of warning for close(). ./src/H5detect.c Seg-faults on Linux for some reason when NDEBUG is defined, so I just undef it at the top of the source. ./test/big.c Added a fflush(). ./tools/h5ls.c The `-d' flag now works even when `-v' isn't specified. ./examples/h5_chunk_read.c ./examples/h5_compound.c ./examples/h5_extend_write.c ./examples/h5_group.c ./examples/h5_read.c ./examples/h5_write.c Indented according to hdf5 standards. Fixed compiler warnings
* [svn-r593] Added couple banner lines around the "Testing ...." message andAlbert Cheng1998-08-141-0/+3
| | | | | also a trailing blank line to make it easier to identify the output of each test program.
* [svn-r590] Cache numeric type sizes and C std headers.Robert Kim Yates1998-08-131-1/+11
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* [svn-r579] Changes since 19980806Robb Matzke1998-08-061-20/+24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/solaris2.5 Hopefully set up now so it honors the CC and CFLAGS variables and understands solaris cc flags. ./test/big.c Checks to see if creating lots of large sparse files exceeds the user disk quota and skips the test. It also checks that we can actually open ~64 files at once. ./doc/html/Files.html ./src/H5A.c ./src/H5Aprivate.h ./src/H5F.c ./src/H5Fpublic.h Added the H5Fflush() function which takes any object as an argument as long as the object is in some way associated with a file. This required an H5A_entof() ./src/H5.c ./src/H5Flow.c The `%a' format of HDfprintf() now allows a field width and justification flag etc, like the other formats. The old H5F_addr_print() was recoded to call HDfprintf() instead of vice versa.
* [svn-r569] Changes since 19980731Robb Matzke1998-08-051-4/+24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./bin/release Added ./Makefile to the distribution again -- it got lost in the changes last week although it isn't all that important a file since it gets clobbered by configure anyway. ./bin/trace ./doc/html/Filters.html ./doc/html/H5.format.html ./doc/html/H5.user.html ./src/H5.c ./src/H5D.c ./src/H5Dprivate.h ./src/H5E.c ./src/H5Epublic.h ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5O.c ./src/H5Ocomp.c ./src/H5Oprivate.h ./src/H5P.c ./src/H5Ppublic.h ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Spoint.c ./src/H5Sprivate.h ./src/H5Ssimp.c ./src/H5Z.c ./src/H5Zprivate.h ./src/H5Zpublic.h ./src/hdf5.h ./test/dsets.c ./tools/h5ls.c Added the data filter pipeline, a generalization of the compression stuff which allows things like checksums, encryption, compression, performance monitoring, etc. See ./doc/html/Filters.html for details -- it replaces the Compression.html doc. ./src/H5T.c Cleaned up debugging output. ./config/linux Added checks for egcs and pgcc and changed optimization flags for the compilers. ./src/H5G.c ./tools/h5dump.c Fixed compiler warnings in these files and others. ./configure.in ./src/H5private.h ./test/mtime.c Added a check for difftime() and defined HDdifftime() to do something else on systems that don't have difftime().
* [svn-r510] Changes since 19980713Robb Matzke1998-07-151-2/+2
| | | | | | | ---------------------- ./config/conclude.in Fixed so `make test' and `make progs' work on a clean source tree.
* [svn-r485] Changes since 19980710Robb Matzke1998-07-133-5/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./Makefile.in ./config/commence.in ./config/conclude.in ./config/depend.in ./src/Makefile.in ./test/Makefile.in Tests are no longer installed for `make install'. Added a new target `make tests' that builds the tests but doesn't run them. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Added detection of fork() and waitpid(). If present the contants HAVE_FORK and HAVE_WAITPID will be defined in H5config.h. ./test/dtypes.c Minor tweaks for systems that don't have fork() or waitpid(). ./MANIFEST ./tools [NEW] ./tools/Makefile.in [NEW] ./tools/h5debug.c [NEW] ./tools/h5import.c [NEW] ./tools/h5ls.c [NEW] ./tools/h5repart.c [NEW] Added a tools directory and moved tools from the src directory to here.
* [svn-r454] Changes since 19980702Robb Matzke1998-07-061-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5T.c Prints statistics for no-op conversions also. For now, hardware floating point conversions may or may not raise SIGFPE depending on the hardware, operating system, etc. Software conversions never raise SIGFPE and use +Inf or -Inf for overflow. ./test/dtypes.c Catches SIGFPE and causes the test to be skipped. Better test for NaN. ./config/irix5.3 Removed the -U_POSIX_SOURCE because it was removed from the main makefiles. ./bin/trace ./src/H5S.c Fixed a typo that prevented tracing info from being added to new API functions.
* [svn-r446] Changes since 19980702Robb Matzke1998-07-031-1/+1
| | | | | | | | | | | ---------------------- ./MANIFEST Added new files from testpar directory. ./config/commence.in Removed -D_POSIX_SOURCE because hdf5 uses a couple of non-Posix things when certain debugging flags are switched on.
* [svn-r437] Changes since 19980612Robb Matzke1998-06-301-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5Tbit.c ./src/H5Tpkg.h Fixed a bug in H5T_bit_copy(). Added H5T_bit_get_d() and H5T_bit_set_d() which treat portions of a bit vector as an unsigned integer. Added H5T_bit_inc() that increments part of a bit vector and returns an indication of overflow. ./src/H5Tconv.c ./src/H5Tpkg.h ./test/dtypes.c Added a slow general floating point conversion which works so far on Intel, MIPS, and DEC but the test is turned off because a cast from double to float will cause a SIGFPE on some systems if an overflow occurs. Added fast hardware conversions between native floating point types. This function is also subject to the SIGFPE problem. ./src/H5detect.c Removed the exponent bias adjustment when the significand isn't normalized. This is now handled in the conversion functions instead. ./src/H5T.c Register new conversion functions. Plugged a memory leak in the library termination code. ./RELEASE Added a list of major changes since the first alpha. ./src/H5.c ./src/H5private.h ./src/H5A.c ./src/H5AC.c ./src/H5D.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5G.c ./src/H5Gprivate.h ./src/H5HG.c ./src/H5O.c ./src/H5T.c ./src/H5Tbit.c ./src/H5Tconv.c Fixed various compiler warnings on Irix64. ./src/H5MM.c Added PABLO_MASK to this file. ./test/chunk.c Removed a warning about memcpy().
* [svn-r429] Changes since 19980616Robb Matzke1998-06-172-1/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/tracing.html NEW This entire update is to make it possible for the library to print the name, arguments, and return value of every API call without requiring any extra work from developers or app programmers. This file describes how this all works. ./configure.in Added the `--enable-tracing' switch. If you use it then the library will include code to print API function names, argument names and values, and function return values. However, you must then turn on the tracing by setting the HDF5_TRACE environment variable to a file descriptor number. The default is `--disable-tracing' since enabling it causes a slight increase in library size and a slowdown resulting from an extra function call for each API function call (I couldn't even measure the slowdown :-) ./bin/trace NEW A perl script that synchronizes the H5TRACE() macro calls in the *.c files with the function return type and formal argument names and types. If you use GNU make and gcc then this will be done automatically, otherwise just invoke this script with the names of one or more .c files. You could do it by hand to, but encoding argument types is a little tricky at first. ./config/commence.in Added the $(TRACE) macro, which defaults to the no-op. Added -D_POSIX_SOURCE to the compiler command line. ./src/Makefile.in Override the default for $(TRACE). ./config/depend.in Automatically calls $(TRACE) to synchronize the H5TRACE() macros in any source file that changed. As with makefile dependencies, one way to force synchronization of all files is to remove the `.depend' file. ./MANIFEST Added new files. ./src/H5Eprivate.h Modified HRETURN_ERROR() and HRETURN() for tracing. ./src/H5.c ./src/H5private.h This is where the real tracing work really happens, in H5_trace(). ./src/H5A.c ./src/H5D.c ./src/H5G.c ./src/H5P.c ./src/H5S.c ./src/H5Z.c Added H5TRACE() calls to all API functions. You don't really need these changes if you don't want to merge your stuff because they can be generated automatically by going to the hdf5/src directory and saying ../bin/trace *.c ./src/H5T.c Added H5TRACE() calls. Other stuff below. ./src/H5E.c ./src/H5Epublic.h Added H5TRACE() calls. Created a type H5E_auto_t for the `func' argument of H5Eset_auto() and H5Eget_auto() to make those arguments easier to parse for tracing. It should also make it clearer for users that don't know how to read complicated ANSI data types. ./src/H5F.c Added H5TRACE() calls. Changed a couple `uintn' argument types in API functions to `unsigned int' since `uintn' part of the API. Changed a few "can't" and "cant" error messages to "unable to". ./src/H5Ipublic.h Removed H5_DIRECTORY from the H5I_group_t enum. It wasn't used anywhere. ./src/H5Tconv.c Removed an unused label. ./src/H5Fistore.c ./src/H5Oattr.c ./src/H5Odtype.c ./src/H5T.c ./test/dsets.c ./test/dtypes.c Fixed a warning about a variable possibly used before it's initialized. Added __unused__ to turn off some unused argument warnings that pop up when debugging is turned off and optimizations are turned on.
* [svn-r417] ./config/linuxRobb Matzke1998-06-101-0/+6
| | | | | | Made `--enable-parallel' the default on my system. It used to be that way before but then I accidently turned it off and forgot about it.
* [svn-r405] Irix systems do not need to use ranlib command. Set RANLIBAlbert Cheng1998-06-042-0/+2
| | | | to ':' to make it a null action.
* [svn-r398] Changes since 19980501Robb Matzke1998-05-131-2/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5Bprivate.h ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fprivate.h ./src/H5Gpkg.h ./src/H5MF.c ./src/H5P.c ./src/H5Ppublic.h ./test/big.c ./html/Big.html ./html/Files.html Family members can now be any size >1kB. Got rid of some places where we were reading a property list after it was closed. ./MANIFEST ./src/Makefile.in ./src/h5repart.c A program to repartition file families. The source and/or destination may be files or file families. Examples: testhdf5 -c -o stab h5repart -m 1m tstab2.h5 x%05d.h5 h5repart -m 100k x%05d.h5 y%05d.h5 h5repart y%05d.h5 z.h5 diff tstab2.h5 z.h5 ./src/h5ls.c Added a usage message, replaced assertions with error messages. ./config/linux Made a warning message more obvious. Added better optimization flags for Pentium-Pro's.
* [svn-r385] Purpose:Paul Harten1998-05-041-1/+1
| | | | | | | | | | | | | | | | | | | Bug fix Problem: On the ASCI Red machine, the configure step is executed from the platform cross compiler, so that the configure test for "long long int" format support was inconclusive. Solution: It was necessary to uncomment the line #hdf5_cv_printf_ll=${hdf5_cv_printf_ll='ll'} in config/intel-osf1 to force "long long int" format support. Platform tested: TFLOPS Application server, Intel TFLOPS
* [svn-r376] ./acconfig.hRobb Matzke1998-04-243-51/+90
| | | | | | | | | | | | | | | | | | | | | | | ./configure.in ./config/BlankForm ./src/H5.c Configure tries to figure out how to print `long long' types and then defines PRINTF_LL_WIDTH to be `ll' or `q' or something. It does this by running little sprintf() programs with various formats until it gets one that works. If this causes problems when cross compiling (like with parallel machines) then you may add the following to the appropriate config file: hdf5_cv_printf_ll=${hdf5_cv_printf_ll='ll'} or hdf5_cv_printf_ll=${hdf5_cv_printf_ll='q'} or hdf5_cv_printf_ll=${hdf5_cv_printf_ll='l'} ./config/intel-osf1 ./config/irix5.3 Updated these config files to match the others. This allows the `--enable-production' configure flag to work properly.
* [svn-r367] Purpose:Paul Harten1998-04-231-1/+1
| | | | | | | | | | | | | | Documentation (mostly!) Solution: This change in the hdf5/config/intel-osf1 file makes the $(RUNTEST) variable used in the Makefiles explicitly list the number of processors used during execution (the change is: yod -> yod -sz 1). Platform tested: Intel TFLOPS (ASCI Red)
* [svn-r356] Changes since 19980421Robb Matzke1998-04-221-10/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./bin/release ./src/H5.c ./src/H5private.h ./src/H5public.h ./src/H5Fpublic.h Changed the version number constants to names that begin with H5_VERS_ and added macros that check that the version numbers in the include files match the version number of the library. ./MANIFEST ./html/H5.user.html ./html/Version.html [NEW] ./html/version.obj [NEW] ./html/version.gif [NEW] Documented version numbers and the macros, constants, and functions associated with them. ./bin/versinc A perl script that increments the minor version number and sets the patch level back to zero. This is intended to be invoked from the top of the source tree by a cvs commit anywhere in the source tree. Quincey? ./src/H5O.c ./src/H5Oprivate.h Added H5O_count() to count the number of object header messages of a particular type. Quincey needs this for the attribute package. ./test/dsets.c Fixed warnings. Enabled the small strip-mine buffer test. ./config/linux Added optimizations for the Pentium-Pro for production mode.
* [svn-r355] Changes since 19980417Robb Matzke1998-04-211-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- This checkin completes the compression stuff almost two weeks ahead of schedule. It should now all be working and documented. ./Makefile.in ./config/commence.in A distclean causes the distribution makefile to be copied to Makefile again. ./src/H5D.c Opening a compressed dataset now works properly. ./src/H5P.c ./src/H5Ppublic.h The H5Pset_compression() and H5Pget_compression() now work as documented. ./src/H5T.c Fixed a bug that causes the library to crash sometimes if debugging is turned on for the `t' package. ./src/H5Z.c Fixed a bug where the number of bytes attributed to compression overruns was too low in the debugging output. ./test/dsets.c More compression tests: reading of uninitialized data, opening an existing dataset and reading it, partial I/O which isn't aligned on chunk boundaries, and use of application-defined compression methods. ./MANIFEST Removed ./test/dspace.c.
* [svn-r349] Set "cc" as the C compiler. The CFLAGS setting works with SGIAlbert Cheng1998-04-161-0/+3
| | | | compilers only.
* [svn-r347] Added '*.core' to distclean target and set new location for cpp ↵Quincey Koziol1998-04-142-1/+2
| | | | | | on FreeBSD machines.
* [svn-r337] Changes since 19980403Robb Matzke1998-04-071-0/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in Moved setting of compiler warning switches earlier in the file. Turned on more warning switches to gcc. ./config/linux Prints a warning if the gcc version is less than 2.8.1 since that version has problems with register allocation for `long long'. ./html/Datatypes.html Documented sharing of data types between datasets. ./src/H5G.c ./src/H5Gpublic.h Implemented H5Gmove(), H5Glink() and H5Gunlink() for hard links. Still have soft links to do. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5D.c ./src/H5E.c ./src/H5Eprivate.h ./src/H5F.c ./src/H5Farray.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fpublic.h ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5HG.c ./src/H5HL.c ./src/H5HLprivate.h ./src/H5I.c ./src/H5Iprivate.h ./src/H5MM.c ./src/H5MMprivate.h ./src/H5O.c ./src/H5Oefl.c ./src/H5Oprivate.h ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5P.c ./src/H5S.c ./src/H5Ssimp.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tprivate.h ./src/H5Tpublic.h ./src/H5V.c ./src/H5Vprivate.h ./src/H5detect.c ./src/h5ls.c ./test/cmpd_dset.c ./test/dsets.c ./test/external.c ./test/hyperslab.c ./test/iopipe.c ./test/istore.c ./test/shtype.c ./test/tstab.c Fixed comparisons between signed and unsigned values. Fixed warnings about unused function arguments.
* [svn-r335] Changes since 19980330Robb Matzke1998-04-0310-197/+345
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./src/Makefile.in ./test/Makefile.in Added new files. ./config/linux ./src/H5HL.c ./src/H5HLprivate.h ./src/H5MF.c ./src/H5MFprivate.h Added `-DH5HL_DEBUG -DH5MF_DEBUG' to the debug list. ./html/H5.format.html Updated shared object message information. ./src/H5D.c Datasets can now share data types. ./src/H5F.c Updated a comment that referred to H5ACC_WRITE. ./src/H5HG.c ./src/H5HGprivate.h Moved a few things around. Made debugging better so you can now give a collection address to ./src/debug and it shows some useful stuff. ./src/H5O.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Olayout.c ./src/H5Oname.c ./src/H5Onull.c ./src/H5Oprivate.h ./src/H5Osdspace.c ./src/H5Oshared.c [NEW] ./src/H5Ostab.c Supports shared messages. ./src/H5T.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5Tpublic.h The H5Tshare() function allows the user to give the library hints about how a data type will be used. ./test/shtype.c Tests the H5Tshare() function. ./test/gheap.c Tests the global heap. ./configure.in ./config/BlankForm [NEW] ./config/alpha-dec ./config/freebsd2.2.1 ./config/hpux10.20 ./config/irix6.2 ./config/irix64 ./config/linux ./config/powerpc-ibm-aix4.2.1.0 ./config/rs6000-ibm-aix4.1.4.0 ./config/solaris2.5 Cleaned up lots of configuration stuff and made the site configuration files lots easier and more uniform. To make a new file grab the BlankForm and modify it. By default, debugging is turned on for most packages. Within a package one can use `#ifdef H5AC_DEBUG' to wrap debugging code. Other options are: --enable-debug --enable-debug=yes The default, most but not all packages. --disable-debug --enable-debug=no --enable-debug=none The symbol NDEBUG is defined and none of the package debug symbols. --enable-debug=all Debugging is turned on for all packages. This might produce lots of output. --enable-debug=g,d Debugging is turned on for H5G and H5D. A compile mode is also now supported --enable-production --enable-production=yes The library is compiled with optimizations turned on. The compiler flags are augmented by adding PROD_CFLAGS and PROD_CPPFLAGS which are defined in the site config file. --disable-production --enable-production=no The default. The library is compiled for development by including DEBUG_CFLAGS and DEBUG_CPPFLAGS defined in the site config file. This is usually just `-g'. --enable-production=profile --enable-production=pg Builds a library for profiling by including the flags from PROFILE_CFLAGS and PROFILE_CPPFLAGS defined in the site config file. This is usullay just `-pg' but it could include optimization flags as well depending on the type of profile one wants. In summary, configure by saying `./configure' and you'll get a development version of the library. Configure by saying `./configure --enable-production --disable-debug' and you'll get a production version with no debugging code.
* [svn-r334] Purpose:Paul Harten1998-04-021-1/+1
| | | | | | | | | | | | | | | | | | | | | | To resolve a reference. Problem: Reference to routine 'getrusage()' is unresolved during link step. Solution: In the site config file, hdf5/config/intel-osf1, the line LIBS="-L./ -L../" has been extended to include ... LIBS="-L./ -L../ -lnoop_stubs", a reference to a library which includes the 'getrusage()' routine. Platform tested: sasn100
* [svn-r326] Changes since 19980318Robb Matzke1998-03-181-2/+4
| | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/linux Turned on MPIO if the host name is `arborea' so I always compile it and realize when I break something instead of waiting for Albert or Kim to find it. ./MANIFEST ./html/H5.user.html ./html/IOPipe.html [NEW] ./html/pipe1.gif [NEW] ./html/pipe1.obj [NEW] ./html/pipe2.gif [NEW] ./html/pipe2.obj [NEW] ./html/pipe3.gif [NEW] ./html/pipe3.obj [NEW] ./html/pipe4.gif [NEW] ./html/pipe4.obj [NEW] ./html/pipe5.gif [NEW] ./html/pipe5.obj [NEW] Documented the raw data I/O pipeline.
* [svn-r325] Changes since 19980317Robb Matzke1998-03-182-9/+21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./configure.in ./configure ./Makefile.in ./bin/distdep [NEW] ./config/conclude.in ./config/depend.in ./src/.distdep [NEW] ./test/.distdep [NEW] Added some code so non-GNU systems have a list of dependencies between the .c files and the .h files. Hopefully this works and y'all don't have to keep saying `make clean' each time you change a header. On systems with GNU make, GCC, and Perl, the dependency information is generated automatically from rules in config/depend.in as has always been done. But now extra files called `.distdep' (for `distributable dependencies) are left in each directory and these are part of CVS and thus releases. (A `make dep' will create dependencies on demand without doing anything else.) On systems lacking one or more of the tools above, the various `.distdep' files are inserted into the end of the Makefiles. If you do developement on one of these systems you'll have to update the `.distdep' and/or Makefile by hand, or wait until you have access to a GNU system and do a `make dep'.
* [svn-r322] Changes since 19980313Robb Matzke1998-03-172-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./configure ./test/iopipe.c Added check for system(3) ./config/freebsd2.2.1 ./config/linux Added -DH5D_DEBUG to the debug flags. ./src/H5D.c ./src/H5Dprivate.h ./src/H5P.c ./src/H5Ppublic.h ./src/H5Sprivate.h ./src/H5Ssimp.c ./html/Datasets.html Finally implemented strip mining in the I/O pipeline, placing a user-defined upper bound on the amount of temporary memory used by the pipeline. The default is 1MB type conversion and background buffers allocated/freed on demand. However, the size can be changed and/or application-allocated buffers supplied with H5Pset_buffers() called on the data transfer property list passed to H5Dread() and H5Dwrite(). Minor optimizations to H5Dread() and H5Dwrite(). More coming later... ./test/dsets.c Added calls to H5Pset_buffer() to test application-defined temporary buffers in the I/O pipeline. ./test/Makefile.in Removed `iopipe' from the list of confidence tests. Saying `make timings' in the test directory runs timing tests. I did this because (1) they don't really test anything new, and (2) they can take a long time to run.
* [svn-r317] Added Irix 5.3 support (on fuga)Quincey Koziol1998-03-121-0/+13
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