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* Fix java include, h5watch and remove clang tool.Allen Byrne2019-12-101-18/+0
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-12-052-2/+5
|\ | | | | | | | | * commit 'c7b3d6d6a5c1d376812e17c0ddb26f55334a2c59': Yanked -Wc++-compat from the flags used to build the C library in both the Autotools and CMake.
| * Yanked -Wc++-compat from the flags used to build the C library in bothDana Robinson2019-12-042-2/+5
| | | | | | | | the Autotools and CMake.
* | Update reference files to latest outputAllen Byrne2019-12-021-3/+0
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-12-022-88/+12
|\ \ | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '0772b975d1d2bfa15aedeb4b6e2c2aac78c61a2f': Fix missing free in H5T__ref_mem_read() Fix bugs in H5VL file comparison code. Add short circuit success to H5VL_cmp_connector_cls(). Implement file comparison VOL callback. Other changes to allow references to work with non-native connectors. There is a bug somewhere. Add support for point selections to H5S_select_project_intersection. Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILE Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf3)" Revert "Oops, remove more C99 designated initializers for VS 2010 compatibility." H5R: fix H5Tconv to check for null references Trivial parameter renaming in VOL API calls. Move checking for zero offset in selection adjust calls to the selection callbacks. This makes the procedure for checking it consistent across selection types and between _s and _u, ensures it is always is performed even when called within the H5S package, and removes the redundant check that would occur when callins H5S_select_adjust_s() from outside the H5S package. Replace H5Sselect_adjust_u() and H5Shyper_adjust_s() with H5Sselect_adjust. Implement "adjust_s" callback for all selection types. Add range checking to H5Sselect_adjust().
| * Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings ↵David Young2019-11-272-88/+12
| | | | | | | | level and fixing some code.' (commit 5c911d8baf3)"
* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-11-262-12/+88
|\ \ | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'a8892bb42d6f6e4fbc30fae0eb2b957f81c938b9': (45 commits) Oops, remove more C99 designated initializers for VS 2010 compatibility. Add an #include to get a function declaration. Don't use C99 designated initializers, they're not compatible with Visual Studio 2010. Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*. This is more code that may not compile with VS2010, *sigh sigh*. Always warn on maybe-uninitialized. -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using. Only promote maybe-uninitialized warnings to errors on GCC 8. Even on GCC 8, there may be false positives at low optimization levels? I need to check. Only use -Werror=cast-function-type with GCC 8 and later. Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags. Add new source files to CMakeLists.txt. Mention the -Werror= flags in libhdf5.settings.in. free -> HDfree Promote decleration-after-statement warnings to errors. Quiet decleration-after-statement warnings. Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements. Document H5D__chunk_mem_xfree_wrapper(). Undo accidental test deletion. Oops, delete a debug printf that snuck in here. Undo my changes to the HD macros, hadn't really intended those to be on this branch.... Make errors of some more warnings. Move disabled warnings to DEVELOPER_WARNING_CFLAGS. Put just one warning option on a line, and sort some of the options. Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *. ...
| * Merge remote-tracking branch 'hdf5/develop' into add-werror-and-squash-someDavid Young2019-11-258-10/+46
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| * | Always warn on maybe-uninitialized. -Wincompatible-pointer-types was notDavid Young2019-11-221-2/+2
| | | | | | | | | | | | available until GCC 5, so enable it only if that's the GCC version we're using.
| * | Only promote maybe-uninitialized warnings to errors on GCC 8. Even onDavid Young2019-11-221-1/+7
| | | | | | | | | | | | | | | GCC 8, there may be false positives at low optimization levels? I need to check.
| * | Only use -Werror=cast-function-type with GCC 8 and later.David Young2019-11-221-1/+1
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| * | Put all of the -W options back into the order I found them in so that it'sDavid Young2019-11-221-29/+23
| | | | | | | | | | | | easier to compare old and new config/gnu-flags.
| * | Promote decleration-after-statement warnings to errors.David Young2019-11-131-1/+1
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| * | Make errors of some more warnings. Move disabled warnings toDavid Young2019-11-131-31/+43
| | | | | | | | | | | | | | | DEVELOPER_WARNING_CFLAGS. Put just one warning option on a line, and sort some of the options.
| * | Merge remote-tracking branch 'hdf5/develop' into add-werror-and-squash-someDavid Young2019-11-081-0/+56
| |\ \ | | | | | | | | | | | | to pick up the NetBSD-compatibility changes that I recently merged.
| * | | Change some GCC warnings to errors. Fix code to quiet some warnings.David Young2019-11-052-12/+76
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* | | | Remove unneeded flag overwritesAllen Byrne2019-11-251-8/+0
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* | | Add VS2019 supportAllen Byrne2019-11-188-10/+46
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* | Merge pull request #1984 in HDFFV/hdf5 from ~DYOUNG/netbsd:develop to developDavid Young2019-11-051-0/+56
|\ \ | |/ |/| | | | | | | | | | | | | | | | | | | | | | | * commit '0b721858e46a317c370a24115032d5be41688f67': Make these scripts relocatable again: derive a relative path for the original installation prefix from the examples prefix. Use that relative path to locate the current installation prefix, always. Fall back to an absolute installation prefix if the relative path cannot be derived. Get the path to prefix right: needs a ../ to back out of subdirectory c/. Make this script relocatable again: derive a relative path for the original installation prefix from the examples prefix. Use that relative path to locate the current installation prefix, always. Fall back to an absolute installation prefix if the relative path cannot be derived. Let us override the examples directory using --with-examplesdir=DIR. This is handy for NetBSD where HDF5 examples are installed by convention in $prefix/share/examples/hdf5/ rather than in ${prefix}/share/hdf5_examples/, which is the HDF5 default. Follow longstanding execv convention for compatibility with NetBSD. Under the examples directories, always find the installed HDF5 executables and scripts using @prefix@ instead of a relative path, because the number of ../ in the relative path will be different on NetBSD than on other systems. Make the HDF5 configure script grok NetBSD. For portability, insulate the HDF5 library from some system macros. Not every system has perl installed in /usr/bin/, so change the shebang (#!) line to `/usr/bin/env perl` to locate perl on the PATH. For portability, use the POSIX sh(1) string-comparison operator `=` instead of `==`.
| * Make the HDF5 configure script grok NetBSD.David Young2019-10-031-0/+56
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* | Fix MPI test dependsAllen Byrne2019-10-232-7/+11
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* Add clang toolchainAllen Byrne2019-09-301-0/+29
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* Update versioning to next major versionAllen Byrne2019-09-254-4/+7
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* Update develop branch version to 1.13.0 after creation of hdf5_1_12Larry Knox2019-09-251-1/+1
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* Correct HDF5 options to tristate values.Allen Byrne2019-09-171-6/+10
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* HDFFV-10901 add missing config optionsAllen Byrne2019-09-133-15/+90
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* Use variable for test outputAllen Byrne2019-09-111-1/+2
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* Allow tests to dump output if not comparingAllen Byrne2019-09-111-0/+8
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* Correct Windows checkAllen Byrne2019-09-061-4/+1
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* Add include dirs and default lib for windowsAllen Byrne2019-09-051-0/+4
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* Update Windows require for CURL to CMake 3.13Allen Byrne2019-09-052-195/+3
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* Add updated find module for earlier CMake versionsAllen Byrne2019-09-051-0/+193
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* special windows overrideAllen Byrne2019-09-051-0/+3
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* Correct name and add mingw to 32bit toolchainAllen Byrne2019-09-051-0/+36
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* Fix namespace usageAllen Byrne2019-08-291-3/+3
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* Fix EXISTS test syntaxAllen Byrne2019-08-298-26/+26
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* Update settingsAllen Byrne2019-08-291-2/+4
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* Add 32-bit cross-compile toolchainAllen Byrne2019-08-291-0/+37
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* OESS-29 Update HD prefix mostlyAllen Byrne2019-08-241-2/+21
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-08-131-0/+3
|\ | | | | | | | | | | | | | | | | * commit 'aeb145428f5e6bc51742fff031b0cf8cf6fbefbb': Updated h5trav.c to emit output that doesn't require ddl changes for map support. Fixed Map API CMake option Renamed H5Mdelete_key to H5Mdelete and H5Mset to H5Mput. Added ifdef for intel compilers, __GNUC__ has to be defined for header files which use it to work with intel compilers. This gives a warning for intel compiler about fallthrough, so added a check not to include fallthrough if using intel compilers. Added the map (H5M) API
| * Added the map (H5M) APIDana Robinson2019-08-131-0/+3
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* | HDFFV-10879 set default API versionAllen Byrne2019-08-131-2/+0
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* Use a STRING option for API versionAllen Byrne2019-08-121-1/+1
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* Fix API version optionAllen Byrne2019-08-121-0/+2
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* Merge pull request #1848 in HDFFV/hdf5 from ↵Dana Robinson2019-08-091-2/+0
|\ | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit '4900f8823497c63e9f9464dcb6459ebdcbfdac8d': Fixed an issue with older version of gfortran.
| * Fixed an issue with older version of gfortran.Dana Robinson2019-08-091-2/+0
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* | Use prefix variableAllen Byrne2019-08-061-4/+4
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* Fixed warning typoDana Robinson2019-08-041-1/+1
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* Moved -Wimplicit-procedure gfortran warning to version 4.5 warningsDana Robinson2019-08-031-2/+5
| | | | instead of default.
* Merge pull request #1826 in HDFFV/hdf5 from ↵Dana Robinson2019-08-013-2/+33
|\ | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit '4227b8948d7091205b4f8dc1271d7dcae01bb0fb': Reverts the removal of config/conclude_fc.am while keeping the changes to config/gnu-fflags. Fixed a couple of typos.
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