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* Fix display of long double in tools (#469)Allen Byrne2021-03-171-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace * GH #359 implement and fix tools 1.6 API usage * remove excessive comments * Flip inits to correct ifdef section * rework ifdef to be simpler * format issue * Reformat ifdef inits * remove static attribute * format compliance * Update names * Revert because logic relies on float not being int * Changes noticed from creating merge of #412 * Double underscore change * Correct compiler version variable used * Remove header guard underscores * Whitespace cleanup * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * correct window os name * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * HDFFV-11113 long double in tools * HDFFV-11113 add note Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Removed checks/workarounds for pre-C++89 compatibility (#449)Sean McBride2021-03-102-61/+0
| | | | | | | | After 30+ years, just assume that the following exist: - extension-less includes - namespaces - std:: - static_cast - bool
* Changes found during merge to 1.12 (#414)Allen Byrne2021-03-043-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace * GH #359 implement and fix tools 1.6 API usage * remove excessive comments * Flip inits to correct ifdef section * rework ifdef to be simpler * format issue * Reformat ifdef inits * remove static attribute * format compliance * Update names * Revert because logic relies on float not being int * Changes noticed from creating merge of #412 * Double underscore change * Correct compiler version variable used * Remove header guard underscores * Whitespace cleanup
* Update license url part2 (#333)Larry Knox2021-02-1775-75/+75
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Detect correct long double size with universal binaires (#335)Sean2021-02-151-4/+19
| | | | | | | On macOS on x86_64, long double is 16 bytes; on macOS on arm64, it's 8 bytes. Use the same existing technique used to properly detect other sizes to now also properly detect the size of long double. For bug #311.
* Add option to control gcc 10 warnings diagnostics (#321)Allen Byrne2021-02-086-0/+57
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics
* Remove prohibition against building Universal Binaries on macOS (#318)Sean2021-02-082-18/+0
| | | Fixes github issue #311.
* Reclassify CMake messages - HDFFV-11144 (#253)Allen Byrne2021-01-1314-78/+168
| | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages
* Remove duplicate setting (#236)Allen Byrne2021-01-051-1/+0
| | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Remove duplicate setting
* Add compiler flags for GCC 10, along with updating warnhist script to ↵Quincey Koziol2020-12-216-4/+48
| | | | accommodate them. (#217)
* close #195. (#196)H. Joe Lee2020-12-171-2/+2
| | | | | * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake
* OESS-98 fix hdf5 link target (#188)Allen Byrne2020-12-161-2/+1
| | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * OESS-98 fix hdf5 link target
* OESS-98 convert plugin option to FetchContent, add tests (#155)Allen Byrne2020-12-163-102/+104
| | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * Update other test machines * OESS-98 fix tools test for plugins * HDFFV-10865 performance improvement for java array
* Moves the lists of VOL connectors and VFDs in Autotools builds (#162)Dana Robinson2020-12-121-0/+13
| | | | | The VOL_LIST variable used in the Autotools was duplicated in many subdirectories. It's been moved to config/conclude.am to avoid duplication. VFD_LIST was also moved to conclude.am.
* Fix autotools clang debug optimization level w/ older clang and Xcode ↵Dana Robinson2020-12-021-2/+12
| | | | | | | | | | | | | | versions (#146) * Fixes clang debug optimization level w/ Autotools NOTE: This was only released in HDF5 1.10.7, so only the 1.10 branch needs a note in RELEASE.txt. * Updates the clang -Og setting with a version check w/ autotools * Sets -Og when clang >= 4.0 or Xcode >= 9.0 * Older versions get -O1 * Autotools only
* FreeBSD autotools changes (#142)Dana Robinson2020-11-301-4/+24
| | | | | | | | | | | | | | | | * Updates to allow autotools builds on recent FreeBSD * Switches the default C compiler to cc from gcc (this may need a version string check if we want to support FreeBSD 9 and earlier. FreeBSD 10 was released in 2014) * Makes the default C++ compiler c++ (no previous setting) * Both of these resolve to Clang on FreeBSD 10+ * Added a note about flang being unsuitable on FreeBSD (the port uses an ancient build of flang that lacks Fortran 2003 support) * Autotools only - CMake appears to use different CPP flags which cause compilation errors * Adds a RELEASE.txt note for new FreeBSD autotools changes
* Fixes clang debug optimization level w/ Autotools (#141)Dana Robinson2020-11-301-1/+1
| | | | NOTE: This was only released in HDF5 1.10.7, so only the 1.10 branch needs a note in RELEASE.txt.
* Add else choice to error flags option (#128)Allen Byrne2020-11-2512-0/+271
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* Minor/solaris gcc fix (#126)Dana Robinson2020-11-251-4/+8
| | | | | | | * Adds gnu99 as the standard when building with gcc on Solaris * Adds a note to RELEASE.txt and improves comments For Solaris + gcc fix (HDFFV-11191)
* Adds a configure/CMake option to control -Werror behavior (#119)Dana Robinson2020-11-253-10/+35
| | | | | * Works in both Autotools and CMake * OFF by default * Reverts "always on" -Werror behavior released in 1.10.7
* Correct TARGET variable and CMake config file locationAllen Byrne2020-11-113-5/+6
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* Update to latest doxygen.m4Allen Byrne2020-11-091-156/+0
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* doxygen restore tabsAllen Byrne2020-11-031-4/+4
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* Doxygen correct PHONY targetAllen Byrne2020-11-031-2/+2
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* Doxygen add new files and update docsAllen Byrne2020-11-031-52/+0
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* Add doxygen auotoconf and cmake supportAllen Byrne2020-11-031-0/+156
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* Merge pull request #69 from xantares/mingw3Larry Knox2020-11-021-0/+2
|\ | | | | CMake: Add an option to opt-out static libgcc
| * CMake: Add an option to opt-out static libgccMichel Zou2020-10-311-0/+2
| | | | | | | | | | With sjlj exception model, statically link to libgcc/libstdc++ prevents exceptions to be caught from other dynamic libraries.
* | Merge pull request #67 from xantares/mingw1Larry Knox2020-10-311-1/+1
|\ \ | | | | | | CMake: Set specific INSTALL_DATA_DIR only on MSVC
| * | CMake: Set specific INSTALL_DATA_DIR only on MSVCMichel Zou2020-10-301-1/+1
| | | | | | | | | | | | | | | For MinGW we want INSTALL_DATA_DIR to be set to share instead of . to properly install files in a standard package layout.
* | | Merge pull request #70 from xantares/mingw4Larry Knox2020-10-314-11/+11
|\ \ \ | |_|/ |/| | CMake: MINGW implies WIN32
| * | CMake: MINGW implies WIN32Michel Zou2020-10-304-11/+11
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* | CMake: Add an option to opt-out MSVC naming conventionMichel Zou2020-10-301-2/+2
|/ | | | | We might want to keep the default mingw import name, see: https://github.com/msys2/MINGW-packages/blob/master/mingw-w64-hdf5/hdf5-default-import-suffix.patch
* Merge pull request #56 from derobins/minor/implicit_fallthroughLarry Knox2020-10-231-1/+0
|\ | | | | Removes -Wimplicit-fallthrough=5 from the gcc warnings
| * Removes -Wimplicit-fallthrough=5 from the gcc warningsDana Robinson2020-10-221-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | -Wimplicit-fallthrough=3 is added by -Wextra, which we already set. Bumping the warning level only changes how fall-through comments are parsed, with level 5 turning off fall-through comments entirely. This is unnecessary and results in having to do extra work to squash warnings when included external code uses fall-through. This change also adds /* FALLTHROUGH */ comments where H5_ATTR_FALLTHROUGH is used so compilers that don't use attributes but do respect fall-through comments don't raise spurious warnings.
* | Correct SZ options for building pluginsAllen Byrne2020-10-212-9/+9
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* URL and options correctionsAllen Byrne2020-10-191-0/+2
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* Whitespace and url correctionAllen Byrne2020-10-191-1/+1
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* Remove obsolete fileAllen Byrne2020-10-071-111/+0
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* Refactor parser GCC diagnostic statementsAllen Byrne2020-10-061-4/+20
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* Add mingw defineAllen Byrne2020-10-021-0/+1
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* Merge pull request #2650 in HDFFV/hdf5 from ↵David Young2020-09-282-2/+2
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DYOUNG/werror:rebased-fprintf-experiment to develop * commit 'c0fbc5c086566d5d3c1d1ef26baa81a53d59fc08': (24 commits) Use the right format string, "%zu", for size_t. Repair more format strings. Fix a bunch of format string errors reported by Larry. Fix some HDfprintf compilation errors: use the right format strings ("zu", PRIuHSIZE), avoid casting some printf arguments, pass the right number of arguments. Test the format string "ll" before "l", "L", and "q", like the ./configure script does. This ought to fix the compilation failure in test/dt_arith.c that Allen told me about: Cast a non-void pointer to void pointer for "%p". Use PRIu32 and "zu" formats. Delete some casts from `size_t`. I'm taking a guess that this code intended to point the 2-digit wide hexadecimal octet values, not 2 character-wide pointers to the bytes. The %02p format, which is a GNU-ism, disagreed with GCC 8.3.0 and the option flags we use. %08p is not portable, it's a GNU-ism. Use %8p, instead. Squashes a GCC error. Add format string macros PRI[doxX]HID for hid_t and use PRIdHID. Use HDva_copy() and introduce a bunch of compatbility format-string constants for uppercase hexadecimal strings, `PRIX...`. Should fix the VS2010 errors that Allen mentioned: Always #define HDfprintf as fprintf in this header. I believe this will fix the Windows build error that Allen reported. Provide an HDvasprintf implementation only if it isn't #defined. This should fix the mingw compilation issue that Allen reported. Fix va_list usage in the vasprintf(3) implementation. Promote format-string warnings to errors. Use the portable `-eq` operator instead of the bash-ism `==`. Fixes the tests on NetBSD, where /bin/sh != bash. Restore a literal percent sign ("%%") that I accidentally deleted. Fix code that made GCC complain about a NULL or `unsigned char *` arguments for "%s". Take pains to provide UINT64_MAX in all conditions. Correct a couple of format strings. ...
| * Merge remote-tracking branch 'hdffv/develop' into rebased-fprintf-experimentDavid Young2020-09-272-4/+151
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| * \ Merge remote-tracking branch 'hdffv/develop' into rebased-fprintf-experimentDavid Young2020-09-252-1/+13
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| * | | Test the format string "ll" before "l", "L", and "q", like theDavid Young2020-09-171-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./configure script does. This ought to fix the compilation failure in test/dt_arith.c that Allen told me about: /home/buildbot/bb-workers/centos8-vm01/hdf5trunk-StdShar-code-centos8/build/hdfsrc/test/dt_arith.c: In function ‘test_conv_int_1’: /home/buildbot/bb-workers/centos8-vm01/hdf5trunk-StdShar-code-centos8/build/hdfsrc/test/dt_arith.c:2500:34: error: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘long long int’ [-Werror=format=] HDfprintf(stdout," %29"H5_PRINTF_LL_WIDTH"d\n", *((long long*)aligned));
| * | | Merge remote-tracking branch 'hdffv/develop' into rebased-fprintf-experimentDavid Young2020-09-037-3/+41
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| * \ \ \ Merge remote-tracking branch 'hdffv/develop' into rebased-fprintf-experimentDavid Young2020-07-303-2/+4
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| * \ \ \ \ Merge branch 'rebased-fprintf-experiment' into fprintf-developDavid Young2020-07-091-1/+1
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| | * | | | | Promote format-string warnings to errors.David Young2020-07-071-1/+1
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* | | | | | | Remove setting from cacheinit fileAllen Byrne2020-09-281-2/+0
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