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* Remove unused cruft from bin dir (#3071)Dana Robinson2023-06-072-4/+4
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* Move config/cmake_ext_mod content to config/cmake (#3062)Dana Robinson2023-06-0718-713/+689
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* Bring key changesets from develop (#3052)Dana Robinson2023-06-064-0/+11
| | | | | | | | | * Bump GitHub action macOS version to 13 (#2999, #3009) * Bump GitHub action gcc/g++/gfortran version to 12 (#3015) * Bump Autoconf version to 2.71 (#2944) * Fix missing h5_reset() calls in accum test (#3001) * Only run ttsafe in GitHub thread-safe actions (#2777) * Fix Java debug asserts on Windows (#3012) * Fix long double dt_arith bug on macOS (#3038)
* Update actions and change defaults of compression (fix vars) (#3043)Allen Byrne2023-06-056-50/+30
| | | | | | | | | * Update actions and change defaults of compression (fix vars) * disable TS and parallel * remove parallel for TS * Correct list of default options
* Hdf5 1 12 dt action (#2965)Allen Byrne2023-05-181-4/+4
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* Fix CMake generator expression syntax (#2940)Allen Byrne2023-05-121-3/+3
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* Correct usage of CMAKE_BUILD_TYPE (#2868)Allen Byrne2023-05-023-23/+20
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* Correct compression install files (#2847)Allen Byrne2023-04-302-8/+22
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* Add support for CMakePresets and fix example download (#2819)Allen Byrne2023-04-301-0/+491
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* Fix CMake for version less then 3.18 (#2651)Allen Byrne2023-03-304-26/+44
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* Update cross compile checks and files #2497 (#2565)Allen Byrne2023-03-292-87/+93
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* Change libaec URL to actively maintained repo GH#2552 (#2561)Allen Byrne2023-03-182-3/+3
| | | | | * Change libaec URL to actively maintained repo GH#2552 * Remove duplicated https
* Update Copyright headers. (#2534)Larry Knox2023-03-1329-29/+0
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* Fix new codespell issues (#2521) (#2530)Larry Knox2023-03-101-1/+1
| | | | | | | | | | | | | * Fix new codespell issues (#2521) * Fix new codespell issues * Have codespell ignore ./config/sanitizer/sanitizers.cmake * Fix typo in genparser. --------- Co-authored-by: Mark Kittisopikul <mkitti@users.noreply.github.com>
* 1.12 Add fetchcontent for compression libs and fix cmake config #2487 (#2493)Allen Byrne2023-03-0116-87/+1987
| | | | | | | * Add fetchcontent for compression libs and fix cmake config #2487 * Add CI test for FetchContent * Use LINK_COMP_LIBS instead of STATIC_LIBRARY for depends
* Remove space from toolchain name #2482 (#2484)Allen Byrne2023-02-211-0/+0
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* Merge toolchain lowercase names and updates #2426 (#2468)Allen Byrne2023-02-179-24/+55
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* 1.12 Merge Correct pkgconfig variables and libraries #2259 (#2478)Allen Byrne2023-02-172-2/+2
| | | | | * Merge Correct pkgconfig variables and libraries #2259 * Fix spacing
* CMake: Find MPI in HDF5 CMake config (#2400) (#2411)Larry Knox2023-01-251-0/+2
| | | Co-authored-by: kwryankrattiger <80296582+kwryankrattiger@users.noreply.github.com>
* 1.12 Merge HDFGroup#2175 Implement option for using CMake GNUInstallDirs (#2221)Allen Byrne2022-11-047-44/+117
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* Merge #2198 correct CMake MPI linking (#2215)Allen Byrne2022-11-041-2/+2
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* Update examples reference to single-source version 2.0.1 (#2108)Allen Byrne2022-09-243-31/+32
| | | Also fix github URL refs
* Spelling fixes for codespell (#2038)Dana Robinson2022-08-182-3/+3
| | | | | | | * Spelling fixes for codespell * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Correct target name for szaec lib - merge #2000 (#2001)Allen Byrne2022-08-173-10/+11
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* Merge UG from 1.10 and add prelim vol section (#1980)Allen Byrne2022-08-091-0/+1
| | | | | | | * Merge UG from 1.10 and add prelim vol section * Spelling fixes * Merge format and autotools javadoc from 1.10
* fortran module folder from GH#1411 #1922 (#1942)Allen Byrne2022-07-272-1/+20
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* Revert "1.12 eliminate unnecessary errors in the error stack (#1880)" (#1935)Larry Knox2022-07-261-5/+5
| | | This reverts commit f6997681335f0b5fe2e8904f9108a71c5200fb2d.
* 1.12 eliminate unnecessary errors in the error stack (#1880)Allen Byrne2022-07-181-5/+5
| | | | | | | | | | | * Eliminate unnecessary error output * Fix merge typo * fix format * Fix object address to tokens * Fix conflict
* 1.12 HDFFV-11310 implement JNI VL support for primitive types (#1856)Allen Byrne2022-07-121-5/+5
| | | | | | | | | | | | | | | * HDFFV-11310 - implement VL read/write using List of Lists * Fix function name typo * Add JIRA issue * Correct note to match change in code. * HDFFV-11318 add VL references as byte arrays * Fix unreleased allocations * Fix format
* Hdf5 1 12 sync (#1794)Allen Byrne2022-06-129-11/+17
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* Use windows ENV var for default install dir setting #1763 (#1767)Allen Byrne2022-05-172-2/+2
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* So number updates to match 1.12.2 release. (#1635)Larry Knox2022-04-151-17/+17
| | | | | | | | | * Undo increment of max_idx for addition of 1.14 verrsion from develop in make_vers. max_idx must match 1.12 version, otherwise build error results with --disable-deprecated-symbols. * Update Platforms tested and standardize indentation in RELEASE.txt. * Update so numbers to match 1.12.2 release.
* Update version to 1.12.3-1 after creating hdf5_1_12_2 releaseLarry Knox2022-04-081-2/+2
| | | | | preparation branch. Clean release note entries from RELEASE.txt.
* 1.12: Brings 1.12 compiler options in line with develop (#1611)Dana Robinson2022-04-0710-85/+69
| | | | | * Brings 1.12 compiler options in line with develop * Revert 'since' doxygen field in H5public.h
* 1.12: Brings C++ wrappers in line with develop, minus C++11 bits (#1604)Dana Robinson2022-04-075-112/+2
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* Misc fixes from develop nov21 - feb22 (#1580)Larry Knox2022-04-054-65/+63
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Make default to build high-level tools the same as default for (#1234) high-level library. * Updated README.txt to README.md (#1375) * H5Lexists docs: Removed reference to 1.8.16 since the change is the 1.8.x releases, HDFFV-11289 * H5Oget_info_by_name, name can be any object, not just a group * Converted README.txt to README.md and updated files referring to README.txt to README.md. * removed references to README.txt * updated MANIFEST * Snprintf2 (#1399) * Replaced many uses of sprintf with safer snprintf Many very straightforward, but in a few cases added a length parameter to some private functions, because buffer length was otherwise unknowable. * Removed unnecessary use of static on small buffers This improves thread safety. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Replaced several uses of sprintf with safer snprintf (#1383) * Replaced several uses of sprintf with safer snprintf * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Used clang-tidy to change all floating point f suffixes to F (#1359) * Added another missing override keyword on a dtor (#1384) * Creating FUNDING.yml (#1427) * Creating FUNDING.yml Will add sponsor this project widget to the repo's page. * Correct file name Add sponsor widget; filename typo fixed. * Update MANIFEST * Fixed AbstractDs::getVarLenType documentation (#1441) * Committing clang-format changes * Open bsd fixes (#1195) * Fix end of line alignment. Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org> Co-authored-by: Sean McBride <sean@rogue-research.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: loricooperhdf <lori.cooper@hdfgroup.org> Co-authored-by: myd7349 <myd7349@gmail.com>
* 1.12 New References for Dimension Scales (#1139) (#1574)Larry Knox2022-04-022-25/+29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * New references for Dimension Scale APIs (#1139) * Enable usage of new-style references with dimension scale APIs * Add API to check if an object ID represents a native connector object * Modified code to use new function H5DSwith_new_ref to determine if new references should be used with Dimension Scales. The new function return TRUE if non-native connector is used or if H5_DIMENSION_SCALES_WITH_NEW_REF varible is define at configure time (--enable-dimension-scales-with-new-ref). Tested on jelly. ToDo: generate testing file on BE system and enable the test; add flag to CMake; test netCDF-4 with the new references. * Adding new test files generated on BE system (hedgehog) created by 32 and 64-bit library. test_ds chokes on test_ds_le_new_ref.h5 on BE system; test passes for test_ds_be_new_ref-32bit.h5 for the 32-bit library and fails for the 64-bit library, and vice versa. I am checking the files for further investigation; but current implementation of the new references is not portable between LE and BE systems, and 32 and 64-bit systems. * Minor fixes for testing issues * Update test_ds.c Enabled broken test; tests pass now. * Update RELEASE.txt Documented new option to use new references with the HDF5 dimension scales APIs (H5DS*). * Update MANIFEST for new 32-bit new-style references test file for H5DS APIs * Update 'dimension scales w/ new-style refs' feature based on review Co-authored-by: Elena <epourmal@hdfgroup.org> * Fix H5DS warnings related to new H5DSwith_new_ref and H5VLobject_is_native APIs (#1184) Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Elena <epourmal@hdfgroup.org>
* Update command format, avoid policy warning (#1551)Allen Byrne2022-04-011-3/+3
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* Hdf5 1 12 parallel compression merge (#1529)jhendersonHDF2022-03-282-4/+4
| | | | | | | | | | | | | | | | * Fix the function cast error in H5Dchunk.c and activate (#1170) `-Werror=cast-function-type`. Again. * Parallel Compression improvements (#1302) * Fix for parallel compression examples on Windows (#1459) * Parallel compression adjustments for HDF5 1.12 * Committing clang-format changes Co-authored-by: David Young <dyoung@hdfgroup.org> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Windows and *nix use different forms for warnings #1515 (#1524)Allen Byrne2022-03-253-4/+5
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* Change ENV to CMake var #1520 (#1521)Allen Byrne2022-03-251-2/+1
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* 1.12 Fix release check version logic #1438 (#1493)Allen Byrne2022-03-121-2/+2
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* 1 12 Add -showconfig to h5cc scripts to dump libhdf5.settings file (#1482)Allen Byrne2022-03-111-1/+22
| | | | | | | * Merge Add -showconfig to h5cc scripts to dump libhdf5.settings file * Added note * Fix comments
* 1.12 Update HDF5_ROOT usage (#1486)Allen Byrne2022-03-111-1/+1
| | | | | * Update HDF5_ROOT usage * Fix typo
* 1 12 Merge SZ plugin changes from develop (#1455)Allen Byrne2022-02-2420-49/+51
| | | | | | | * Merge SZ plugin changes from develop * Update examples version * Update examples version
* Merge Update the java slf4j logging jars to latest 1.7.33 (#1370)Allen Byrne2022-01-241-2/+2
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* Fix cmake dynamic analysis on windows (#1374)Allen Byrne2022-01-242-5/+21
| | | | Fix sanitizer flag form on windows Add search paths to windows code-coverage
* Merge Fix Fortran REGEX and newlines #1226 (#1228)Allen Byrne2021-12-023-9/+9
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* Merge Github #969 Use stdout instead of file for configure check #1089 (#1204)Allen Byrne2021-11-192-54/+26
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* Merge Fix Java VOL tests #1158 (#1160)Allen Byrne2021-11-033-303/+7
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