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* [svn-r12669] Description:Quincey Koziol2006-09-151-0/+6
| | | | | | | | Use a slightly less efficient method of computing the log2() on SGI IRIX64, in order to avoid a compiler bug when optimizations are turned on. Tested on: SGI IRIX64 6.5 (atlantia)
* [svn-r12640] Frank Baker2006-09-041-0/+16
| | | | | | | | Description: Add per-directory abbreviated copyright notices (abbreviated COPYING files pointing to full notices). Tested: MANIFEST verified; not otherwise tested.
* [svn-r12636] Purpose:Albert Cheng2006-08-291-5/+20
| | | | | | | | | | Improve default settings. Use mpicc, mpif90, mpirun as the default $CC, $FC, and $RUNPARALLEL if enable-parallel. Tested: in TG-NCSA both serial and parallel.
* [svn-r12609] Description:Quincey Koziol2006-08-221-6/+30
| | | | | | | | | | Comment out the use of the "-Wpadded" flag, it's generating far too many warnings that are impossible to correct and probably making it harder to see other warnings that are more important. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12608] Checked in External Link C examples.James Laird2006-08-221-1/+1
| | | | | | | | Since these examples need to follow filesystem paths, the Makefiles need to create directories in the examples directory; added this to the Makefile.am. Tested on Windows, mir, juniper
* [svn-r12584] Mentioned VFD in test output to make it easier to tell which ↵James Laird2006-08-171-7/+6
| | | | | | | | | VFD is being used when a test is run. Running reconfigure also regenerated error header files (because someone edited them manually?).
* [svn-r12579] Description:Elena Pourmal2006-08-151-1/+5
| | | | | | | | | | | -O3 flag causes compilation problems on most of the platforms with Intel compiler. The problem exists in all vesrions of icc compiler up to the newest 9.1 Solution: Use less agressive default setting O2 to avoid headache Platforms tested: Linux 2.6 ia64 at UCAR (hal), cobalt (NCSA)
* [svn-r12519] Fixed "make check-vfd"James Laird2006-07-311-2/+3
| | | | | | | | | | "make check-vfd" will now run all tests in the test directory with different file drivers (at least, all of those tests that use the testing framework's FAPL). Tests that fail will be skipped. This is not a perfect fix, but is better than nothing. Along with this change, check-vfd should be added to the Daily Tests.
* [svn-r12434] Purpose: MaintenanceElena Pourmal2006-06-221-0/+95
| | | | | | | | | | | | Description: Added support for HPUX11.23 Solution: Added configuration file for the system. Both C, C++, F90, HL 32-bit and 64-bit are supported. Known problems: C++ library will not build in 64-bit mode if shared is enabled. Platforms tested: HPUX 11.23 at UMKC Misc. update:
* [svn-r12431] Purpose:James Laird2006-06-212-17/+17
| | | | | | | | | | | | | | Configuration feature Description: 'make install' now tests both static and shared libraries if both are installed. Solution: Previously, shared libraries were only tested when static libraries were not installed. Also cleaned up line in commence.am that was including HL library in all Makefiles. Platforms tested: mir (Makefile change only)
* [svn-r12344] Purpose:Albert Cheng2006-05-121-1/+4
| | | | | | | | | | | | | | | | | | | | Bug fix. Description: C++ testhdf5 failed when it tried to inspect the size of a file via the HDstat call. The reason was that the CFLAGS has -D_LARGE_FILES hardset in it while the CXXFLAGS does not. So, C is using an off_t that is 8 bytes while C++ is using off_t as 4 bytes. C is using a version of 64bits stat/off_t/etc while C++ uses the 32 bits version. Thus a failure. Solution: Added -D_LARGE_FILES to $CXXFLAGES so that both C and C++ are using the same version of stat/off_t/etc. Platforms tested: Tested in Copper only, both 32 and 64 bits since the changes affected the AIX platform only.
* [svn-r12329] Purpose:MuQun Yang2006-05-041-1/+4
| | | | | | | | | | | | | | | | | work-around solution for special cases in collective IO Description: For collective IO if some processes don't have any contributions to IO, even with the new SGI compiler(7.4.4m), the testing program will be hanged. Previously only thought it didn't work with old compiler. It turned out not to be true. Solution: Turned off the special flag: H5_MPI_SPECIAL_COLLECTIVE_IO_WORKS Platforms tested: UCAR IRIX 6.5 this file only affects IRIX 6.x system. No need to test at other platforms. Misc. update:
* [svn-r12325] James Laird2006-05-032-7/+8
| | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: The Daily Test errors were due to H5_CFLAGS not being included when configure tested the sizes of some values. Rolled back the offending changes. Solution: There is a "correct" solution to this problem, which is to ensure that the H5_CFLAGS are included in autoconf's tests. This rollback is only temporary until the "real" fix can be applied. Platforms tested: copper (problem only in aix config file)
* [svn-r12318] James Laird2006-05-016-22/+25
| | | | | | | | | | | | | | | | Purpose: H5CC feature Description: Made H5_CFLAGS change to several more configuration files. Solution: Moved nonessential flags from CFLAGS to H5_CFLAGS for several more platforms. If my guesses about which flags were nonessential were wrong, we'll have Daily Test errors. Platforms tested: mir, cray, copper, juniper (OS X)
* [svn-r12312] Purpose:James Laird2006-04-281-2/+2
| | | | | | | | | | | | | | | | H5_CFLAGS change Description: Made the threadsafe flags in config/freebsd H5_CFLAGS so that they are not passed on to h5cc. Solution: If user applications need the threadsafe flag to link properly against the threadsafe HDF5 library, we'll see linking errors in make-install when threadsafe is enabled, and can revert this change. Platforms tested: mir only (very minor change)
* [svn-r12302] Purpose: MaintenanceElena Pourmal2006-04-251-4/+4
| | | | | | | | | | | | | Description: In the past we had Fortran support only for 64bit mode on IRIX64-6.5. This feature was hardcoded in the IRIX configuration file. New automatic Fortran datatypes configuration should support both 32bit and 64bit modes. I finally verified that it worked. Solution: Removed -64 flag from the configuration file. Platforms tested: UCAR IRIX64-6.5 in 32 and 64bit modes. Misc. update:
* [svn-r12301] Purpose:James Laird2006-04-257-54/+54
| | | | | | | | | | | | | | H5_CFLAGS change Description: Converted a few platforms to use H5_CFLAGS to "test the waters" Solution: Modified a few config/* files to use H5_CFLAGS for non-essential flags. Platforms tested: mir, heping
* [svn-r12295] Purpose:James Laird2006-04-212-5/+5
| | | | | | | | | | | | | | | | | | | Several bug fixes Description: Added config file for Cray X1 (previous file was misnamed) Simplified some code in hyperslab.c test that seemed to have been confusing compiler on Cray X1. Fixed typo in config/commence.am Cleaned up hl/src/Makefile.am Solution: All four fixes should be straightforward. The failure on Cray was very difficult to debug, but involved arithmetic errors. This change seems to fix it. Platforms tested: heping, copper, sol, some Cray X1 (more testing when system comes back up)
* [svn-r12276] Purpose: Maintenance/typo fix/1.8.0-alpha0 releaseElena Pourmal2006-04-181-1/+1
| | | | | | | | | | | | | | | | | | | | | | Description: Here is what I did: modified MANIFEST according Quincey's instructions to fix the problem exposed by bin/release (compilation fails because some header files were not included in the distribution) fixed small typo and modified include_HEADERS line in src/Makefile.am to address the problem exposed by bin/release ran bin/h5vers to change version number to 1.8.0-alpha0 ran bin/release to release tar ball to the ftp server Solution: Platforms tested: mir MANY,MANY,MANY times Misc. update:
* [svn-r12229] Purpose:Pedro Vicente Nunes2006-04-121-0/+3
| | | | | | | | | | | | | | | | | | | | | new feature Description: 1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library 2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in) 3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h Solution: Platforms tested: linux 32, 64 AIX solaris with fortran and c++ (one packet table example fails) Misc. update:
* [svn-r12154] Purpose:James Laird2006-03-241-2/+8
| | | | | | | | | | | | | | | Removed -march flag Description: The -march optimization flag is bad in some circumstances Solution: Prevented HDF5 from adding the -march archicture-specific optimization flag, so that users could have one version of HDF5 used by several different machines. Platforms tested: heping (one of the few platforms that affected by this small change)
* [svn-r12149] Purpose:James Laird2006-03-232-7/+1
| | | | | | | | | | | | | | | | Bug fix Description: Previous checkin did a bad thing; 'make clean' failed in example directories. Solution: Fixed commence.am so that examples no longer break, and fixed a mistake in conclude.am. Platforms tested: heping (minor makefile change) Misc. update:
* [svn-r12143] Purpose:James Laird2006-03-231-0/+4
| | | | | | | | | | | | | | Bug fix Description: make check-clean didn't clean results of example tests Solution: Fixed Makefiles so that check-clean recurses into example directories. Also a little Makefile cleanup. Platforms tested: mir, modi4, heping, copper
* [svn-r12083] Snapshot version 1.7 release 58HDF Admin2006-03-131-1/+1
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* [svn-r12045] Purpose:MuQun Yang2006-03-091-0/+28
| | | | | | | | | | | | | Setting appropriate macro during configuration. Description: We found special collective IO doesn't work in mpich 1.2.5 and 1.2.6. Solution: Use this script to detect this during configuration and set the correct macro. Platforms tested: heping,mir and copper Misc. update:
* [svn-r11962] Purpose:MuQun Yang2006-02-211-1/+1
| | | | | | | | | | | | | The previous check-in seems fixing the non-selection failure at heping. Description: release the special_collective_io_works macro at this platform. Solution: Platforms tested: heping mpich 1.2.6 Misc. update:
* [svn-r11954] MuQun Yang2006-02-171-0/+1
| | | | | | | | | | | | | | | | | | | | Purpose: bug fix Description: modi4's sgi compiler is too old to support collective IO when there are no contributions from some processes. Solution: Disable mpi_special_collective_io_work macro. Platforms tested: NCAR SGI MODI4 COOPER Misc. update:
* [svn-r11942] Purpose:MuQun Yang2006-02-162-0/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add collective chunk IO supports Description: Added a macro hdf5_mpi_special_collective_io_works to filter out some mpi-io packages that don't support collective IO for no IO contributions in some processes. Solution: 1. "hdf5_mpi_special_collective_io_works=${hdf5_mpi_special_collective_io_works= 'no'}" has been added at the end of file ia64-linux-gnu and linux-gnulibc1 2. Some comments are added in ia64-linux-gnu and linux-gnulibc1. 3. Documents are added inside RELEASE.txt. Platforms tested: Parallel: IBM AIX 5.2(copper) Linux (heping) mpich-1.2.6 SDSC Teragrid mpich-1.2.5 Linux(Tungsten) mpich-1.2.6 Altix(NCSA cobalt) Seq: Linux(heping) Misc. update:
* [svn-r11884] Snapshot version 1.7 release 57HDF Admin2006-01-221-1/+1
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* [svn-r11880] Snapshot version 1.7 release 56HDF Admin2006-01-151-1/+1
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* [svn-r11852] Purpose:Quincey Koziol2006-01-021-3/+44
| | | | | | | | | | | Code cleanup/update Description: Update compiler flags for gcc 4.1.x & start cleaning up some of the C++ compatibility Platforms tested: FreeBSD 4.11 (sleipnir) w/gcc 4.1 and/or g++
* [svn-r11851] Purpose:James Laird2006-01-021-3/+3
| | | | | | | | Updated documentation. Description: Updated libtool library version and release notes for attribute character encoding change.
* [svn-r11848] Snapshot version 1.7 release 55HDF Admin2006-01-011-1/+1
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* [svn-r11836] Snapshot version 1.7 release 54HDF Admin2005-12-251-1/+1
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* [svn-r11834] Purpose:Quincey Koziol2005-12-241-1/+1
| | | | | | | | | | | | Bug fix Description: Tone down the optimization flags for gcc 4.2.x in the same way as we do for all the other gcc 3/4 builds, to avoid datatype conversion issues. Platforms tested: FreeBSD 4.11 (sleipnir) w/gcc 4.2 Not tested by h5committest
* [svn-r11795] Snapshot version 1.7 release 54HDF Admin2005-12-141-1/+1
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* [svn-r11791] Purpose:James Laird2005-12-131-0/+74
| | | | | | | | | | | Bug fix Description: Fogot to commit file config/examples.am in previous checkin. Solution: The examples.am file contains common Makefile rules for the example directories.
* [svn-r11784] Purpose:Albert Cheng2005-12-111-26/+15
| | | | | | | Customize more for the red-storm platform. Platforms tested: Red-storm.
* [svn-r11782] Purpose:Albert Cheng2005-12-111-0/+12
| | | | | | | | | | | | | | bug fix. Description: Mpich2 also has the derived type errors but some mpich2 gave no verison number and some gave 1.0.2. Solution: Added those two cases to catch mpich2 that had these sort of errors. Platforms tested: heping using mpich and mpich2.
* [svn-r11768] Purpose:Albert Cheng2005-12-071-0/+0
| | | | | | | | | | | | Feature. Description: Removed the entry for tflops which has retired. Added a special --host entry for redstorm. This allows "configure --host=redstorm" for building in RedStorm. Platforms tested: Red Storm.
* [svn-r11761] Purpose:Albert Cheng2005-12-051-1/+1
| | | | | | | | | | | | | Unstable format version marker. Description: This marks the Check in baseline for compact group revisions, which radically revises the source code for managing groups and object headers. Earlier versions (1.7.52 or earlier) have the original format. This version and later have the unstable format until further notice. Platforms tested: h5committested.
* [svn-r11741] Purpose:James Laird2005-11-181-6/+16
| | | | | | | | | | | | | | | | | Bug fix Description: Fortran type generation was broken in two ways. Fixed both. Solution: Firstly, there were a couple of path problems. Fixed a typo and specified the full path of a file. Secondly, the dependencies weren't right when building with HDF5-specific commands (make lib, make check-s, etc.). Tweaked dependencies to fix the problem. Platforms tested: mir, modi4, sleipnir
* [svn-r11738] Purpose:James Laird2005-11-181-0/+4
| | | | | | | | | | | | | | | | | | | Configure feature Description: Added 'make trace' target. Solution: Added tracing to 1.7. This was done automatically in 1.6, but left out of 1.7 until now (oops!). Tracing in 1.7 only happens manually, when the user types 'make trace.' Tracing automatically requires more framework than it's worth. I also fixed a couple of tracing bugs and ran trace. Platforms tested: mir, sleipnir, modi4 Misc. update:
* [svn-r11737] Purpose:James Laird2005-11-172-1/+9
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix Description: Before this checkin, 'gmake check-s' would fail if there was a file in the current directory named 'check-s'. This is fixed under gmake (not sure how to fix for other makes). Solution: check, progs, install, etc. are what gmake calls "phony" targets, which means that no file should be created. These targets can be specified by a line of the form .PHONY: check progs install ... Automake adds this line for targets it knows about, but HDF5 has a lot of custom rules. This checkin adds a .PHONY line for those rules. I believe that only gmake recognizes the .PHONY line (at least, pmake doesn't seem to), but a partial solution is better than none. This error should occur very rarely anyway (the user has to manually create files with names like 'build-check-s' or '_test'). Platforms tested: mir, sleipnir, modi4
* [svn-r11646] Purpose:James Laird2005-10-311-4/+16
| | | | | | | | | | | | | | | | | | Bug fix/feature Description: Added support for -shlib in h5fc and h5c++. Made check-install use -shlib when only shared libraries have been installed. Solution: h5fc and h5c++ didn't recognize -shlib. Stole code from h5cc to link against shared libraries. When static libraries are disabled, the examples Makefiles will automatically use the -shlib option to link against shared libraries. Thus, --disable-static and make check-install should work together. Platforms tested: heping(disable-static, enable-static, fortran, c++), modi4 (disable-static, fortran, c++, parallel, enable-static)
* [svn-r11639] Purpose:Albert Cheng2005-10-311-1/+2
| | | | | | | | | | Cleanup Description: Removed the redundent use of -Minform,warn which is the default anyway. Platforms tested: Heping with pgi compilers.
* [svn-r11638] Purpose:Albert Cheng2005-10-311-2/+2
| | | | | | | | | | | | | | | | | | | Bug fix. Description: PGI v6.0-5 pgf90 compiler has a bug in Mstandard that caused compiling of legal logical value to fail. We also have second thought of imposing -Mstandard and -Mdclchk on users since these flags are included in h5fc. Solution: Removed -Mstandard until we can fix the v6.0-5 compiler error and moved -Mdclchk to DEBUG_FFLAGS so that it is used during development mode but not imposed on users for production release. Platforms tested: heping: production and development mode using v6.0-4 compiler. mir: production and development mode using v6.0-4 compiler.
* [svn-r11614] Frank Baker2005-10-2843-43/+43
| | | | | | | Description: Correct typo in copyright notice. Platforms tested: Ran hdf5/bin/chkcopyright without errors.
* [svn-r11612] Purpose:James Laird2005-10-271-1/+1
| | | | | | | | | | | | | Bug fix Description: Failed parallel tests now cause make to exit with an error. Solution: Edited config/conclude.am to throw an error if parallel test programs fail. Platforms tested: heping, modi4
* [svn-r11610] Purpose:Albert Cheng2005-10-263-31/+46
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: The previous way of detecting the MPICH version fails if the suspected $CC does not give the expected MPICH version information. Though no consequence, it generates error messages that alarm users. Also, mpich2 gives the version information as if it were mpich v1.0.2 which was incorrectly included as an earlier version of the origianl mpich. Solution: Implemented a more robust code to detect the version and narrow the recognition down to v1.2.0-v1.2.5. Also, the code were duplicated in two files (linux-gnulibc1 and ia64-linux-gnu). Combined them into a new file called mpich. Platforms tested: Tested in heping using mpicc and mpich2/mpicc and also in tg-ncsa. Misc. update: Updated MANIFEST.
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