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* Merge remote-tracking branch 'hdffv/develop' into rebased-fprintf-experimentDavid Young2020-09-031-6/+56
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| * 1. HDFFV-10830 part 2, move AC_CHECK_HEADERS([szlib.h] afterLarry Knox2020-08-161-6/+6
| | | | | | | | | | | | | | | | AC_CHECK_LIB([sz], [SZ_BufftoBuffCompress] to avoid compiling H5Z.c with szlib.h after its path is removed from AM_CPPFLAGS. 2. Remove unnecessary links to ${HDF5_TOOLS_LIB_TARGET} in utils/mirror_vfd/CMakeLists.txt that prevent building HDF5 with tools disabled.
| * Squash merge of file locking fixesDana Robinson2020-08-031-0/+50
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* | Merge remote-tracking branch 'hdffv/develop' into rebased-fprintf-experimentDavid Young2020-07-301-7/+4
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| * Removed POSIX #defines from configure on Solaris.Dana Robinson2020-07-141-6/+0
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| * Merge branch 'develop' of ↵Larry Knox2020-07-101-0/+7
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop
| * | Remove path to szip header file from AM_CPPFLAGS when configure check of ↵Larry Knox2020-07-101-1/+4
| | | | | | | | | | | | | | | | | | libsz fails. Fix for HDFFV-10830.
* | | Merge branch 'rebased-fprintf-experiment' into fprintf-developDavid Young2020-07-091-1/+1
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| * | Squash my changes on branch `fprintf-experiment` into one commit forDavid Young2020-07-071-1/+1
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | reapplication to my new warnings branch, `warnings-again`. These changes are included: commit 915551b7bf64e777dd2007386ec77b1d117770da Merge: 63858c2 a8892bb Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:39:49 2019 -0600 Merge remote-tracking branch 'hdf5/develop' into fprintf-experiment commit a8892bb42d6f6e4fbc30fae0eb2b957f81c938b9 Merge: 5c911d8 f907b51 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:33:54 2019 -0600 Merge pull request #2055 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop * commit 'f907b511d06612dafc7814a7c30f2f3d2b76d52b': Oops, remove more C99 designated initializers for VS 2010 compatibility. commit 63858c22e168acaec0af8ced6641f26102cc6bb0 Merge: 20ae787 5c911d8 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:04:42 2019 -0600 Merge remote-tracking branch 'hdf5/develop' into fprintf-experiment commit 5c911d8baf3ee7fe654269088eebdf07f59a8192 Merge: b8a5671 62208b0 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 16:58:27 2019 -0600 Merge pull request #2030 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop * commit '62208b056a09c01855fbac7f75146be58ad6bfe5': (44 commits) Add an #include to get a function declaration. Don't use C99 designated initializers, they're not compatible with Visual Studio 2010. Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*. This is more code that may not compile with VS2010, *sigh sigh*. Always warn on maybe-uninitialized. -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using. Only promote maybe-uninitialized warnings to errors on GCC 8. Even on GCC 8, there may be false positives at low optimization levels? I need to check. Only use -Werror=cast-function-type with GCC 8 and later. Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags. Add new source files to CMakeLists.txt. Mention the -Werror= flags in libhdf5.settings.in. free -> HDfree Promote decleration-after-statement warnings to errors. Quiet decleration-after-statement warnings. Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements. Document H5D__chunk_mem_xfree_wrapper(). Undo accidental test deletion. Oops, delete a debug printf that snuck in here. Undo my changes to the HD macros, hadn't really intended those to be on this branch.... Make errors of some more warnings. Move disabled warnings to DEVELOPER_WARNING_CFLAGS. Put just one warning option on a line, and sort some of the options. Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *. Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char to structs containing those arrays. Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc. ... commit 20ae7877e33931b95e8c3502b027d6c3fe94a11f Merge: 46f8c61 edd5297 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:34:09 2019 -0600 Merge remote-tracking branch 'origin/add-werror-and-squash-some' into fprintf-experiment commit 46f8c613d5117a8be5bc8385a072daa0b4262f06 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:29:00 2019 -0600 GCC really wants us to use `ll` to format `long long`, so try to make that work before any other format modifier. Seems like we're not compiling the autoconf test program with -Werror=format ? Probably should. commit eee35b8ef3759c391327cd48a9b3c56b6f8abc99 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:28:05 2019 -0600 It's hard to know just how wide an HDoff_t will be, and I don't think POSIX or C standards provide a PRI macro for it, so cast to intmax_t and format using PRIdMAX. commit 86eab12df7a89b546a38e99f8178dd2adbcb3433 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:26:25 2019 -0600 URemove some casts.se the right format string for the argument. Here and there stop casting a printf argument. commit f722f7cbecbaa99449941484b014426f62f1bed5 Merge: 58e3743 6d5ec83 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 14:44:16 2019 -0600 Merge branch 'add-werror-and-squash-some' into fprintf-experiment commit 58e3743b7faa9836606ee91798fe80dfc0040da7 Author: David Young <dyoung@hdfgroup.org> Date: Wed Nov 20 21:07:21 2019 -0600 Remove custom HDfprintf implementation, using the standard library's, instead. Take a swipe at repairing fprintf format strings, mainly replacing "%Hu" with "%" PRIuHSIZE, "%a" with "%" PRIuHADDR, "%Zu" with "%zu". Here and there remove an awkward cast of a printf argument to `long long` and use PRI[doux]8, PRI[doux]32, or PRI[doux]64, instead. Change occurrences of "%t" to "%s" and perform a suitable change of argument, `cond` -> `cond ? "TRUE" : "FALSE"`. Some occurrences of %Hu, %a, and %t remain, they just weren't flagged by the compiler because of #ifdef'age. commit d4366909293fa970c23512ac80e5d865d76cddbf Author: David Young <dyoung@hdfgroup.org> Date: Wed Nov 20 20:54:32 2019 -0600 Promote format-string warnigns to errors.
* | Fixes Autotools builds on Solaris after monotonic timer changesDana Robinson2020-07-071-0/+7
|/ | | | | | | | clock_gettime() wasn't being found, so some configure changes were needed to set an appropriate POSIX level and use a C99 compiler. This required several compiler flag changes. Autotools only
* Add missing '"'.Larry Knox2020-07-021-1/+1
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* Lib files needed are now copied to a subdirectory in the java/testLarry Knox2020-07-021-1/+4
| | | | | | directory, and on Macs the loader path for libhdf5.xxxs.so is changed in the temporary copy of libhdf5_java.dylib. Fix for HDFFV-11063
* Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2020-06-261-95/+546
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| * Add c++ to --enable-sanitize-checks option.buildbot2020-06-101-0/+2
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| * Add flags from config/clang-warnings/*general files to H5 C and CXX flags ↵Larry Knox2020-06-061-12/+14
| | | | | | | | | | | | | | for all versions of Clang and Clang++ compilers. Switched from cut to awk in testcheck_version.sh.in to avoid dependence on tab vs. " " in version definitions in H5public.h.
| * Add files for adding warning flags for clang compilers in autotoolsLarry Knox2020-06-021-0/+52
| | | | | | | | configure.
| * Add C++ warnings treated as error for autotools builds.Larry Knox2020-04-231-1/+2
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| * Add enable-mirror-vfd flag to configure options.Jacob Smith2020-04-081-12/+26
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| * Merge branch 'develop' of ↵Jacob Smith2020-04-071-1/+5
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into feature/vfd_splitter_mirror_a
| | * Incorporate the H5_ECFLAGS into the library CFLAGS. Now a bunch of errors willDavid Young2020-02-251-0/+4
| | | | | | | | | | | | | | | occur. Next commit will demote the warnings promoted to errors back to warnings again.
| * | Add Splitter VFD to library.Jacob Smith2020-03-131-0/+34
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * "Simultaneous and equivalent" Read-Write and Write-Only channels for file I/O. * Only supports drivers with the H5FD_FEAT_DEFAULT_VFD_COMPATIBLE flag for now, preventing issues with multi-file drivers. Add Mirror VFD to library. * Write-only operations over a network. * Uses TCP/IP sockets. * Server and auxiliary server-shutdown programs provided in a new directory, `utils/mirror_vfd`. * Automated testing via loopback ("remote" of localhost).
| * Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings ↵David Young2019-11-271-4/+0
| | | | | | | | level and fixing some code.' (commit 5c911d8baf3)"
| * Merge remote-tracking branch 'hdf5/develop' into add-werror-and-squash-someDavid Young2019-11-081-0/+25
| |\ | | | | | | | | | to pick up the NetBSD-compatibility changes that I recently merged.
| | * Let us override the examples directory using --with-examplesdir=DIR.David Young2019-10-031-0/+22
| | | | | | | | | | | | | | | | | | | | | | | | | | | This is handy for NetBSD where HDF5 examples are installed by convention in $prefix/share/examples/hdf5/ rather than in ${prefix}/share/hdf5_examples/, which is the HDF5 default. Place hdf5_examples/ under ${datarootdir} which on most systems will be ${prefix}/share/, anyway.
| | * Make the HDF5 configure script grok NetBSD.David Young2019-10-031-0/+3
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| * | Change some GCC warnings to errors. Fix code to quiet some warnings.David Young2019-11-051-0/+4
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| * Remove file scriptAllen Byrne2019-09-251-1/+0
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| * Update versioning to next major versionAllen Byrne2019-09-251-5/+11
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| * Update develop branch version to 1.13.0 after creation of hdf5_1_12Larry Knox2019-09-251-1/+1
| | | | | | | | branch.
| * Revert "Moved NDEBUG guards to H5EA_DEBUG in H5EA package."Dana Robinson2019-09-241-2/+2
| | | | | | | | This reverts commit 431123503d387bce30b1f6db7dc4ad3a33bc51bb.
| * Moved NDEBUG guards to H5EA_DEBUG in H5EA package.Dana Robinson2019-09-171-2/+2
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| * Untangle #ifdef mess in ROS3 code.Dana Robinson2019-08-201-0/+5
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| * Added the map (H5M) APIDana Robinson2019-08-131-0/+26
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| * Squashed commit of the following:Larry Knox2019-07-251-0/+125
| | | | | | | | | | | | | | | | | | | | | | Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
| * Fixed libhdf5 settings file for both autotools & CMakeDhvanil Popat2019-06-251-1/+1
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| * Moved h5cc.in and h5redeploy.in from tools/misc to bin directory. TheyLarry Knox2019-06-141-1/+2
| | | | | | | | | | | | | | should always be built and installed whether tools are enabled or disabled. Also added Makefile.am to bin to build h5redeploy and to install and uninstall them. h5cc is created from h5cc.in by configure.
| * Modified Makefile.ams for h5repack, h5watch and gif2h5 to allowLarry Knox2019-06-121-2/+2
| | | | | | | | | | | | | | disabling tests. Moved h5cc.in from tools/src/misc to src directory to always create h5cc whether or not tools are enabled. Added configuration status of tools and tests to libhdf5.settings.
| * Add options to enable or disable building tools and tests. The defaultLarry Knox2019-06-061-4/+50
| | | | | | | | is enabled for each.
| * Snapshot version 1.11 release 5.hdftest2019-05-021-1/+1
| | | | | | | | Update version to 1.11.6.
| * Merge branch 'develop' of ↵Songyu Lu2019-04-041-2/+2
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| | * Snapshot version 1.11 release 4.hdftest2019-04-011-2/+2
| | | | | | | | | | | | Update version to 1.11.5.
| * | This commit basically has the following changes:Songyu Lu2019-04-041-0/+2
| |/ | | | | | | | | | | 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
| * Updated sec2, log, and core VFDs to use pread/pwrite whenDana Robinson2019-01-311-2/+44
| | | | | | | | available (can be controlled via a configure/CMake option)
| * Merge pull request #1450 in HDFFV/hdf5 from ↵Ray Lu2019-01-081-0/+24
| |\ | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:TRILAB-98-dt_arith-and-cpp_testhdf5-tests to develop * commit 'b02de315b93ac29d2483a91d526b110a25073505': NNSA Tri-LabsTRILAB-98: Another two test cases out. NNSA Tri-Labs TRILAB-98: Taking out a few more test cases. NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu). All failing cases involve long double data type.
| | * NNSA Tri-Labs TRILAB-98: Taking out a few more test cases.Songyu Lu2019-01-081-3/+3
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| | * NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on ↵Songyu Lu2019-01-081-0/+24
| | | | | | | | | | | | sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu). All failing cases involve long double data type.
| * | HDFFV-10443: Add "field" parameter to H5Oinfo* and H5Ovisit* APIs.Scot Breitenfeld2019-01-081-0/+9
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Vailin Choi2019-01-021-0/+2
| |\ | | | | | | | | | | | | | | | | | | | | | develop Resolve conflicts: Conflicts: test/Makefile.am
| | * Merge pull request #1400 in HDFFV/hdf5 from ↵Dana Robinson2018-12-311-0/+1
| | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:openmpi_tweaks to develop * commit 'd6c2a96ac2f103d90b96d5b39814810e6a31ef99': Updated the parallel install docs. Eliminated the need for a separate script variable. Added a helpful message to the flush script. Added a shell script so we can run the parallel flush test on OpenMPI.
| | | * Eliminated the need for a separate script variable.Dana Robinson2018-12-311-6/+1
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