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*-. [svn-r29378] Bring alpha2 in line with revise_chunks (up to r29365)Dana Robinson2016-03-091-88/+199
|\ \ | | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ C++ and Fortran autotools parallel w/ Fortran CMake serial w/ C++ and Fortran
| | * [svn-r29050] Setting --enable-build-mode=debug now creates an H5_DEBUG_BUILD ↵Dana Robinson2016-02-051-0/+1
| | | | | | | | | | | | | | | | | | definition. Tested on: linux VM (minor change)
| | * [svn-r29011] LFS changes in the autotools and library.Dana Robinson2016-01-281-22/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * We assume that fseeko and ftello exist. * The *64 IO functions and types are no longer explicitly used. We now rely on a mapping provided by _FILE_OFFSET_BITS (or its equivalent). * _LARGEFILE(64)_SOURCE is no longer exposed via AM_CPPFLAGS. The CMake files have not yet been updated but CMake is still functional. The CMake configure files will just run a few unecessary tests and create unneeded #defines until they are updated in a few days. Tested on: Linux, OS X, Solaris, z/OS
| | * [svn-r28996] Autotools configure updates to allow separation of build type, ↵Dana Robinson2016-01-271-228/+571
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | debug symbols, asserts, profiling, and optimization. Also much refactoring, improved help, and --enable-<foo> options will now emit errors on nonsense (e.g.: --enable-foo="asdfasdf"). The libhdf5.settings.in file was also reformatted. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial and parallel autotools w/ various options
| | * [svn-r28995] Removed unused packages from list in --enable-debug=<pkgs> ↵Dana Robinson2016-01-271-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | configure option (also updated CMake). Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools serial CMake (CMake 3.3.2)
| | * [svn-r28982] Fixed H5ST_dump signature problem and added st to the list ofDana Robinson2016-01-271-1/+1
| | | | | | | | | | | | | | | | | | | | | packages with extra debugging output. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools
| | * [svn-r28972] Removed option to clear file buffers from autotools, CMake, and ↵Dana Robinson2016-01-261-26/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | library. Buffers that will be written to disk will now always be cleared since not doing this has huge security implications. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0, x86_64) gcc 5.2.1 serial autotools parallel autotools (MPICH 3.1.4) serial CMake
| | * [svn-r28878] Removed some duplicated comment lines from configure.ac.Dana Robinson2016-01-131-3/+0
| | | | | | | | | | | | Tested on: N/A
| | * [svn-r28777] Description:Quincey Koziol2016-01-031-0/+31
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add --enable-memory-alloc-sanity-check option to configure, to track and sanity check memory allocations within the library. This is orthogonal to the --enable-using-memchecker option and can be used with/without it. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| | * [svn-r28730] Snapshot version 1.9 release 233HDF Tester2015-12-281-1/+1
| | |
| * | [svn-r29291] Merge of r29226-29259 from trunk.Dana Robinson2016-03-061-88/+199
| | | | | | | | | | | | | | | | | | | | | Mostly java JNI + a few smaller merges. Tested on: h5committest.new jam w/ java
* | | [svn-r29224] Brought alpha2 branch in sync with revise_chunks (up to r29219)Dana Robinson2016-02-291-276/+586
|\ \ \ | |/ / | | | | | | | | | | | | | | | | | | | | | | | | | | | Note: generated autotools files are from a VM and not THG machines. These will be updated immediately after check-in. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (MPICH 3.1.4) w/ Fortran CMake serial (cmakehdf5 w/ CMake 3.3.2)
| * | [svn-r29205] Merge from trunk:Dana Robinson2016-02-251-0/+2
| | | | | | | | | | | | | | | | | | | | | r28635, 28902, 29030, 29034, 29035, 29119, 29132, 29158 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (debug w/ C++ & Fortran)
| * | [svn-r29148] Merged autotools LFS changes (r29011) from trunk.Dana Robinson2016-02-181-22/+0
| | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (debug w/ C++ & Fortran) autotools parallel (MPICH 3.1.4, debug w/ Fortran)
| * | [svn-r29146] Merged autotools changes from the trunk:Dana Robinson2016-02-181-53/+61
| | | | | | | | | | | | | | | | | | | | | | | | r29050, 29090, 29127, 29129, 29131, 29134, 29139, 29142 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (debug/release w/ C++ & Fortran) autotools parallel (MPICH 3.1.2, debug w/ Fortran)
| * | [svn-r29099] Merged r29094 from trunk. Fixes H5B slowdown.Dana Robinson2016-02-121-1/+6
| | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial CMake serial
| * | [svn-r29016] Merge of r28936, 28949, 28960-29009 from trunk.Dana Robinson2016-01-291-253/+570
| | | | | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ Fortran and C++ autotools parallel (MPICH 3.1.4) w/ Fortran CMake serial (3.3.2, via cmakehdf5)
| * | [svn-r28879] Merge of r28878 from trunk (minor comment fix in configure.ac).Dana Robinson2016-01-131-3/+0
| | | | | | | | | | | | Tested on: N/A
| * | [svn-r28782] Description:Quincey Koziol2016-01-041-0/+31
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r28777 from trunk to revise_chunks branch: Add --enable-memory-alloc-sanity-check option to configure, to track and sanity check memory allocations within the library. This is orthogonal to the --enable-using-memchecker option and can be used with/without it. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r28587] Removed Perl check from configure.ac to bring in line with trunk.Dana Robinson2015-12-111-10/+0
| | | | | | | | | | | | | | | Tested on Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * | [svn-r28492] Merge r28488 from trunk (AC_CHECK_SIZEOF macro fix).Dana Robinson2015-12-031-44/+44
| | | | | | | | | | | | | | | Tested on Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * | [svn-r28386] Maintenance: Bumped version number by setting suffix to swmr3 ↵Elena Pourmal2015-11-181-1/+1
| | | | | | | | | | | | after creating a tar ball for DLS.
| * | [svn-r28374] Added a script to automate the initial VDS + SWMR test.Dana Robinson2015-11-171-1/+2
| | | | | | | | | | | | | | | Tested on Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * | [svn-r28309] Changed prefix to swmr2 after creating a snapshot for DLS.Elena Pourmal2015-11-091-1/+1
| | | | | | | | | | | | | | | Tested on platypus. There were several issues with the bin/release and bin/h5vers scripts, but tar ball and versions look OK after manual inspections.
| * | [svn-r28218] Merge of r28138, 28196, and 28204 from trunk.Dana Robinson2015-10-261-0/+12
| | | | | | | | | | | | | | | | | | | | | | | | hbool_t changes Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) gcc 4.9.2 serial w/ Fortran and C++ parallel (MPICH 3.1.4) w/ Fortran
| * | [svn-r28099] Description:Quincey Koziol2015-10-161-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | Bring r27958 from trunk to branch. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r28068] Removed duplicated Perl check from configure.Dana Robinson2015-10-141-5/+0
| | | | | | | | | | | | | | | | | | Updated the testflushrefresh script to correctly use Perl. Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) gcc 4.9.2
| * | [svn-r28035] Description:Quincey Koziol2015-10-121-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | Bring r27767 & r27968 from trunk to branch. Tested on: MacOSX/64 10.10.5 (amazon) w/serial (h5committest not required on this branch)
| * | [svn-r28028] Description:Quincey Koziol2015-10-111-1/+11
| | | | | | | | | | | | | | | | | | | | | | | | | | | Merge r27339, 27372, 27412, 27432, 27511, 27551, 27622, 27690 from trunk to branch (snapshots) Tested on: MacOSX/64 10.10.5 (amazon) w/serial (h5committest not required on this branch)
| * | [svn-r27985] Minor fixes to get testflushrefresh.sh to work correctly:Dana Robinson2015-10-071-0/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - configure now checks for Perl (removed in the trunk and pushed here). - Removed the svn:executable property from some .in scripts. - Removed some bash-isms from a few test scripts. Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) gcc 4.9.2
| * | [svn-r27964] Merge of misc. changes from trunkDana Robinson2015-10-061-52/+63
| | | | | | | | | | | | | | | | | | | | | r27771, 27772, 27773, 27832, 27900 Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) w/ gcc 4.9.2 (serial only)
| * | [svn-r27960] Autogen merges from trunk.Dana Robinson2015-10-061-38/+10
| | | | | | | | | | | | | | | | | | | | | r27794, 27795, 27802, 27812, 27819, 27826, 27828, 27829, 27878 27880, 27898, 27902 Tested on: local Linux
| * | [svn-r27859] Merged revisionsDana Robinson2015-09-221-1/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 27625, 27627, 27647, 27648, 27661, 27668, 27670, 27671, 27674, 27676, 27703, 27716, 27720, 27747, 27754, 27755 from the trunk. Mostly CMake and Fortran changes. Tested on: jam (w/ gcc/gfortran 4.9.3)
| * | [svn-r27857] Merged revisions 27612-4, 27618, 27663, 27682, 27728 from the ↵Dana Robinson2015-09-221-57/+57
| | | | | | | | | | | | | | | | | | trunk. Tested on: jam (w/ gcc/gfortran 4.9.3)
| * | [svn-r27855] Merged revisions:Dana Robinson2015-09-221-23/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 27509, 27515, 27517, 27521, 27524, 27525, 27537, 27555, 27570, 27575, 27585, 27586, 27590, 27591, 27592 from the trunk. Minor CMake and Fortran changes Tested on: jam (w/ gcc/gfortran 4.9.3)
| * | [svn-r27853] Merged r27488-27500 from the trunk.Dana Robinson2015-09-221-96/+199
| | | | | | | | | | | | | | | | | | | | | Fortran 2003 changes Tested on: jam serial (w/ gcc/gfortran 4.9.3) jam parallel (fortran tests, parallel tests have known failure)
| * | [svn-r27786] Bring revisions #27237 - 27262 from trunk to revise_chunks.Vailin Choi2015-09-141-1/+1
| | | | | | | | | | | | Tested on jam, moohan, kite, platypus.
| * | [svn-r27763] Merges from trunk:Dana Robinson2015-09-121-67/+47
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - tools: 27238, 27252, 27267, 27656 - inline markup: 27278 - bin/bbrelease: 27280, 27283, 27624 - h5vers: 27475 - C++ Doxygen: 27494-6 - FUNC_ENTER macro bug: 27581 - H5is_library_threadsafe: 27587, 27601 - release_docs: 27597 - Autotools freshening: 27641, 27653, 27675, 27686, 27692, 27699, 27722 27731, 27734, 27752 - MANIFEST comments: 27642 Tested on: ostrich & koala various combinations of --enable-threadsafe
| * | [svn-r27758] Implementation for "h5format_convert" tool to convert a chunked ↵Vailin Choi2015-09-111-0/+2
| | | | | | | | | | | | | | | | | | dataset's indexing type to v1 B-tree indexing type. Code review pending.
| * | [svn-r27604] Added (putative) Windows and fcntl-based flock implementations.Dana Robinson2015-08-281-1/+1
| | | | | | | | | | | | | | | | | | Fixes SWMR-18 Tested on: jam and emu (Windows pending CMake changes)
| * | [svn-r27477] Fixed out-of-date MANIFEST.Dana Robinson2015-08-071-3/+3
| | | | | | | | | | | | Tested on: bin/chkmanifest
| * | [svn-r27439] Merged r27428 from trunk.Albert Cheng2015-07-281-0/+153
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix: DAILYTEST-170 Description: XL compilers in ostrich (PowerPC64 linux) fail in test/dt_arith because of the removal of the LLONG_TO_LDOUBLE_CORRECT (removed in r26625) and LDOUBLE_TO_LLONG_ACCURATE (removed in r26623). Solution: Reverse revisions r26623: bring back LDOUBLE_TO_LLONG_ACCURATE configure macro r26625: bring back LLONG_TO_LDOUBLE_CORRECT configure macro r26627: bring back WANT_DATA_ACCURACY configure macro which is used together with the above two macros. This also brings back the enable-dconv-accuracy configure option. Tested: platypus & kituo, using --enable-fortran, --enable-cxx. Also in Ostrich using both GCC and XL compilers.
| * | [svn-r27414] Added platform-independent flock wrappers. When flock is not ↵Dana Robinson2015-07-201-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | present on the system, HDflock becomes a no-op. No Windows implementation of flock has been included. Wflock is currently an empty function. Only the Autotools are supported. CMake in this branch still needs a lot of work. Also fixed a few implicitly defined function warnings due to missing headers. Tested on: jam, emu (Solaris passes make check now)
| * | [svn-r27409] Post release maintenance: increase version number to 1.9.222-swmr1.Albert Cheng2015-07-181-1/+1
| | | | | | | | | | | | Tested: platypus and moohan (CentOS 6 & 7)
| * | [svn-r27335] Bring revisions #24679, #24736 from revise_chksum_retry branch ↵Vailin Choi2015-07-041-1/+0
| | | | | | | | | | | | | | | | | | to revise_chunks. Tested on jam, koala, ostrich, platypus.
| * | [svn-r27288] Bring revision #24622 from revise_chksum_retry branch to ↵Vailin Choi2015-06-261-1/+2
| | | | | | | | | | | | | | | | | | revise_chunks. h5committested. #test-p fails but will be fixed with merges later: #26569 (revise_chksum_retry) + v3 metadata cache #27237 (trunk).
| * | [svn-r27258] Bring revisions #27142 - #27198 from trunk to revise_chunks. ↵Vailin Choi2015-06-201-1/+1
| | | | | | | | | | | | h5committested.
| * | [svn-r27257] Bring revisions #27084 - #27142 from trunk to revise_chunks. ↵Vailin Choi2015-06-201-1/+1
| | | | | | | | | | | | Tested on jam, koala, ostrich.
| * | [svn-r27016] Bring revisions #26986 - #27003 from trunk to revise_chunks. ↵Vailin Choi2015-05-051-1/+1
| | | | | | | | | | | | h5committested.
| * | [svn-r27001] Bring revisions #26837 - #26843 from trunk to revise_chunks.Vailin Choi2015-05-041-0/+21
| | | | | | | | | | | | h5committested.
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