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* Merge remote-tracking branch 'hdf5/develop' into add-werror-and-squash-someDavid Young2019-11-081-0/+25
|\ | | | | | | to pick up the NetBSD-compatibility changes that I recently merged.
| * Let us override the examples directory using --with-examplesdir=DIR.David Young2019-10-031-0/+22
| | | | | | | | | | | | | | | | | | This is handy for NetBSD where HDF5 examples are installed by convention in $prefix/share/examples/hdf5/ rather than in ${prefix}/share/hdf5_examples/, which is the HDF5 default. Place hdf5_examples/ under ${datarootdir} which on most systems will be ${prefix}/share/, anyway.
| * Make the HDF5 configure script grok NetBSD.David Young2019-10-031-0/+3
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* | Change some GCC warnings to errors. Fix code to quiet some warnings.David Young2019-11-051-0/+4
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* Remove file scriptAllen Byrne2019-09-251-1/+0
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* Update versioning to next major versionAllen Byrne2019-09-251-5/+11
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* Update develop branch version to 1.13.0 after creation of hdf5_1_12Larry Knox2019-09-251-1/+1
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* Revert "Moved NDEBUG guards to H5EA_DEBUG in H5EA package."Dana Robinson2019-09-241-2/+2
| | | | This reverts commit 431123503d387bce30b1f6db7dc4ad3a33bc51bb.
* Moved NDEBUG guards to H5EA_DEBUG in H5EA package.Dana Robinson2019-09-171-2/+2
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* Untangle #ifdef mess in ROS3 code.Dana Robinson2019-08-201-0/+5
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* Added the map (H5M) APIDana Robinson2019-08-131-0/+26
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* Squashed commit of the following:Larry Knox2019-07-251-0/+125
| | | | | | | | | | | Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
* Fixed libhdf5 settings file for both autotools & CMakeDhvanil Popat2019-06-251-1/+1
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* Moved h5cc.in and h5redeploy.in from tools/misc to bin directory. TheyLarry Knox2019-06-141-1/+2
| | | | | | | should always be built and installed whether tools are enabled or disabled. Also added Makefile.am to bin to build h5redeploy and to install and uninstall them. h5cc is created from h5cc.in by configure.
* Modified Makefile.ams for h5repack, h5watch and gif2h5 to allowLarry Knox2019-06-121-2/+2
| | | | | | | disabling tests. Moved h5cc.in from tools/src/misc to src directory to always create h5cc whether or not tools are enabled. Added configuration status of tools and tests to libhdf5.settings.
* Add options to enable or disable building tools and tests. The defaultLarry Knox2019-06-061-4/+50
| | | | is enabled for each.
* Snapshot version 1.11 release 5.hdftest2019-05-021-1/+1
| | | | Update version to 1.11.6.
* Merge branch 'develop' of ↵Songyu Lu2019-04-041-2/+2
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| * Snapshot version 1.11 release 4.hdftest2019-04-011-2/+2
| | | | | | | | Update version to 1.11.5.
* | This commit basically has the following changes:Songyu Lu2019-04-041-0/+2
|/ | | | | | 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
* Updated sec2, log, and core VFDs to use pread/pwrite whenDana Robinson2019-01-311-2/+44
| | | | available (can be controlled via a configure/CMake option)
* Merge pull request #1450 in HDFFV/hdf5 from ↵Ray Lu2019-01-081-0/+24
|\ | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:TRILAB-98-dt_arith-and-cpp_testhdf5-tests to develop * commit 'b02de315b93ac29d2483a91d526b110a25073505': NNSA Tri-LabsTRILAB-98: Another two test cases out. NNSA Tri-Labs TRILAB-98: Taking out a few more test cases. NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu). All failing cases involve long double data type.
| * NNSA Tri-Labs TRILAB-98: Taking out a few more test cases.Songyu Lu2019-01-081-3/+3
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| * NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on ↵Songyu Lu2019-01-081-0/+24
| | | | | | | | sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu). All failing cases involve long double data type.
* | HDFFV-10443: Add "field" parameter to H5Oinfo* and H5Ovisit* APIs.Scot Breitenfeld2019-01-081-0/+9
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Vailin Choi2019-01-021-0/+2
|\ | | | | | | | | | | | | | | develop Resolve conflicts: Conflicts: test/Makefile.am
| * Merge pull request #1400 in HDFFV/hdf5 from ↵Dana Robinson2018-12-311-0/+1
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:openmpi_tweaks to develop * commit 'd6c2a96ac2f103d90b96d5b39814810e6a31ef99': Updated the parallel install docs. Eliminated the need for a separate script variable. Added a helpful message to the flush script. Added a shell script so we can run the parallel flush test on OpenMPI.
| | * Eliminated the need for a separate script variable.Dana Robinson2018-12-311-6/+1
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| | * Merge branch 'develop' into openmpi_tweaksDana Robinson2018-12-311-34/+0
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| | * | Added a shell script so we can run the parallel flush testDana Robinson2018-12-201-1/+7
| | | | | | | | | | | | | | | | on OpenMPI.
| * | | Merge branch 'develop' into yay_pluginsDana Robinson2018-12-281-34/+0
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| * | | Added a simple test for registration of VOL connector plugins.Dana Robinson2018-12-271-0/+1
| | |/ | |/| | | | | | | | | | Autotools only for right now, but this will be fleshed out in future work.
* | | Changes based on feedback from pull request.Vailin Choi2018-12-311-1/+1
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* | | Fix for HDFFV-10659: The library abort with "infinite loop closing library"Vailin Choi2018-12-281-1/+1
| |/ |/| | | | | | | | | | | | | after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
* | Squash merge of MDC logging changes.Dana Robinson2018-12-211-34/+0
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* Snapshot version 1.11 release 3.hdftest2018-11-051-1/+1
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-09-211-1/+1
|\ | | | | | | | | | | * commit 'f03758613a6ec83e5ddd664590d162ccc888f13e': Snapshot version 1.11 release 2. Normalization with vol_integration (test code and H5Xtest.c)
| * Snapshot version 1.11 release 2.hdftest2018-09-201-1/+1
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* | Correct $withval usage in configureAllen Byrne2018-09-201-9/+9
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* Correct default API version for develop to 112.Larry Knox2018-08-301-1/+1
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* HDFFV-10552 Add missing HDF5_USE_110[2]_API_DEFAULT optionAllen Byrne2018-08-171-3/+10
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* Merge pull request #1167 in HDFFV/hdf5 from ↵Jordan Henderson2018-08-021-0/+63
|\ | | | | | | | | | | | | | | | | | | ~JHENDERSON/hdf5:bugfix/MPI2_only_fixes to develop * commit '9aa2eaeb9ed9c94f63973cb55f13de256558497c': Add Autotools and CMake checks for big I/O MPI-3 functions Add hdf5settings section for parallel compression status in CMake builds Switch to CheckSymbolExists in CMake Add configure check for MPI_Mprobe and MPI_Imrecv functions
| * Add Autotools and CMake checks for big I/O MPI-3 functionsJordan Henderson2018-07-311-0/+32
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| * Add configure check for MPI_Mprobe and MPI_Imrecv functionsJordan Henderson2018-07-261-0/+31
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add line to libhdf5settings file for status of Parallel writes to filtered datasets status Surround Parallel Compression code in MPI_VERSION >= 3 checks Add disabled message for Parallel Compression built w/ MPI-2 Modify Parallel Compression tests to only run the parallel filtered read tests when parallel filtered writes are disabled Update big I/O code to handle being built with MPI-2 Add checks to CMakeLists.txt for MPI_Mprobe and MPI_Imrecv
* | Removed FORTRAN_SIZEOF_LONG_DOUBLE from public .h filesM. Scot Breitenfeld2018-07-301-1/+0
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* Merge branch 'develop' of ↵Larry Knox2018-07-181-1/+1
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop
| * Fixed HDFFV-10404Binh-Minh Ribler2018-07-131-1/+1
| | | | | | | | | | | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* | Apply Cygwin pathches from Marco Atzeri.Larry Knox2018-07-181-13/+0
|/ | | | Commit Joe Lee's typo corrections for src/H5MF.c.
* Revert "Merge pull request #1116 in HDFFV/hdf5 from ↵hdftest2018-06-241-1/+1
| | | | | | | ~HDFTEST/hdf5_hft:hdf5_1_10 to develop" This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
* Snapshot version 1.10 release 3 (snap3)hdftest2018-06-241-1/+1
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