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* [svn-r18701] ID 1853:Albert Cheng2010-05-041-0/+22
| | | | | | | | Added the configure option --enable-h5dump-packed-bits for the h5dump optional feature. Tested: Jam (default and --disable-h5dump-packed-bits).
* [svn-r18696] I added a macro definition if the system is Cygwin in ↵Raymond Lu2010-05-041-0/+1
| | | | | | | | | | configure.in. This macro is used to skip the data conversion test from unsigned long long to long double. The GCC on Cygwin seems to have rounding problem when doing conversion from unsigned long long to long double (Please bug #1813). Tested on jam. I'll test it on Cygwin after this checkin.
* [svn-r18688] Snapshot version 1.8 release 4 (snap20)HDF Tester2010-05-031-1/+1
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* [svn-r18658] Bug: 1764Albert Cheng2010-04-281-2/+3
| | | | | | | | | | | | | | | | | | | | | | | | Description: longjmp do not necessary restore signal that is blocked during the signal handling. This caused the Alignment test to fail quietly, resulting in wrong alignment information which will cause failures later. Solution: One can use sigsetjmp/siglongjmp to restore signal handling but not all systems such as Cray XT or VMS supports sigsetjmp. Backup solution is to use sigprocmask to reset the signal. Again, some systems may not support it either. Added code to try the first and then the second solution. Also added tests to verify if the signal_handler routines are working properly. Finally, added code to print results of the verification (in form of comments) to H5Tinit.c for inspection in case of failure. (Note that many platforms do not have alignment limits at all and ALIGNMNET code never raise the SIGBUS or SIGSEGV errors. In those cases, it does not matter whether the signal handlers work or not. Again, this can be deduced from the results comments near the end of the H5Tinit.c. If the sum of signal handlers called equals the total of verify, it means ALIGNMENT does not raise any signals.) Tested: htcommittested (linew is not accessible), jam(serial), Redstorm.
* [svn-r18646] In H5T_get_native_type of H5Tnative.c, I changed the way that ↵Raymond Lu2010-04-271-0/+3
| | | | | | | | | the offset, alignment, and size of nested compound type are calculated by using H5T_cmp_offset. The old way had a bug in it (see bug #1850). Tested on amani, linew, and jam.
* [svn-r18635] Description:Quincey Koziol2010-04-271-0/+2
| | | | | | | | | | | Bring r18634 from trunk to 1.8 branch: Clean up compiler warnings. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode (h5committested on trunk)
* [svn-r18591] Snapshot version 1.8 release 4 (snap19)HDF Tester2010-04-191-1/+1
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* [svn-r18546] Snapshot version 1.8 release 4 (snap18)HDF Tester2010-04-121-1/+1
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* [svn-r18467] Snapshot version 1.8 release 4 (snap17)HDF Tester2010-03-291-1/+1
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* [svn-r18434] Snapshot version 1.8 release 4 (snap16)HDF Tester2010-03-221-1/+1
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* [svn-r18422] Description:Quincey Koziol2010-03-181-0/+3
| | | | | | | | | | | | | | | | | | | | | | | Bring r18413:18420 from trunk to 1.8 branch: - unify srcdir query, etc. - Move libhdf5.settings string out of H5Tinit.c Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18408] Snapshot version 1.8 release 4 (snap15)HDF Tester2010-03-151-1/+1
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* [svn-r18351] Snapshot version 1.8 release 4 (snap14)HDF Tester2010-02-281-1/+1
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* [svn-r18307] Snapshot version 1.8 release 4 (snap13)HDF Tester2010-02-221-1/+1
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* [svn-r18255] Snapshot version 1.8 release 4 (snap12)HDF Tester2010-02-141-1/+1
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* [svn-r18234] Snapshot version 1.8 release 4 (snap11)HDF Tester2010-02-121-1/+1
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* [svn-r18219] Snapshot version 1.8 release 4 (snap10)HDF Tester2010-02-081-1/+1
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* [svn-r18203] Snapshot version 1.8 release 4 (snap9)HDF Tester2010-02-021-1/+1
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* [svn-r18201] Snapshot version 1.8 release 4 (snap8)HDF Tester2010-02-011-1/+1
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* [svn-r18161] Snapshot version 1.8 release 4 (snap7)HDF Tester2010-01-251-1/+1
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* [svn-r18121] Snapshot version 1.8 release 4 (snap6)HDF Tester2010-01-171-1/+1
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* [svn-r18101] SnapshotHDF Tester2010-01-101-1/+1
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* [svn-r18062] SnapshotHDF Tester2010-01-041-1/+1
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* [svn-r18058] SnapshotHDF Tester2009-12-271-1/+1
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* [svn-r18049] SnapshotHDF Tester2009-12-211-1/+1
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* [svn-r18014] SnapshotHDF Tester2009-12-141-1/+1
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* [svn-r17975] SnapshotHDF Tester2009-12-071-1/+1
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* [svn-r17941] Description:Quincey Koziol2009-12-011-1/+2
| | | | | | | | | | | | Bring r17939 from trunk to 1.8 branch: Handle external links from symlinked files by adding another check to look for "child" files for links from the actual location of the "parent" file, instead of from the location of the symlink. Tested on: FreeBSD/32 6.3 (duty) (h5committested on trunk)
* [svn-r17925] Description:Quincey Koziol2009-11-231-6/+4
| | | | | | | | | | | | | | | | | Bring r17924 from trunk to 1.8 branch: Add detection for POSIX lstat() routine to configure script (mostly for non-UNIX/Linux machines) and add macro wrapper for it. Alphabetatize the system/library calls we test for, to make them easier to read. Removed the sigaction() detection & macro wrappers, since it's not used by the distribution currently. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17709] Maintenance: Changed version number to 1.8.4-snap0Elena Pourmal2009-10-211-1/+1
| | | | Updated RELEASE.txt and HISTORY.txt file accordingly.
* [svn-r17677] Snapshot version 1.8 release 3 (snap13)Larry Knox2009-10-191-1/+1
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* [svn-r17676] Purpose:Mike McGreevy2009-10-191-6/+23
| | | | | | | | | | | | | Configure Cleanup Description: Make all AM_CFLAGS visible in CFLAGS during configure so all checks have full visibility of any set flags. Tested: h5committest
* [svn-r17665] Remove -D_POSIX_SOURCE from CPPFLAGS in h5cc. This flag breaks ↵Larry Knox2009-10-171-1/+1
| | | | | | netcdf4 when compiling with h5cc and is not missed by hdf5-examples or hdfeos5. Tested: jam.
* [svn-r17664] Purpose:Mike McGreevy2009-10-161-230/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | configure cleanup Description 1. Removed check that disables shared libraries when pgcc is used. Apparently they previously did not work with libtool 1.5.14 and on mir, neither of which is in use anymore. Testing on jam and amani appear fine, so this check is unnecessary. 2. Removed check that disables shared C++ libraries when -xarch is used to enable 64 bit mode. We now use m64 flag to build 64 bit binaries, so we shouldn't explicitly disable shared C++ libraries if -xarch is discovered. 3. Removed old configure output summary section from configure.in, since we now use the libhdf5.settings file. 4. Updated powerpc-ibm-aix5.x config file to once again put c99 flag into H5_CFLAGS (and thus NOT get into h5cc), as decided in our dev meeting. Tested: h5committest full build with pgcc on jam / amani
* [svn-r17655] Purpose:Mike McGreevy2009-10-151-25/+25
| | | | | | | | | | | | Configure cache-val cleanup Description: Corrected some misnamed cache values in configure / config files. Tested: h5committest
* [svn-r17648] Maintenance: Configure didn't cleanup Fortran module file; fixed.Elena Pourmal2009-10-151-1/+1
| | | | | | | Platforms tested: jam (trivial change) Note: Most of the Fortran compilers create module files with "mod" extension. In the past, I believe, there were systems (Cray?) that used different extensions. We should add those to the current fix when we find them.
* [svn-r17645] Purpose:Mike McGreevy2009-10-151-33/+92
| | | | | | | | | | | | | | | Merge from Trunk Description: Merging all of my CFLAGS-related changes from trunk to 1.8 This includes revision #s: 17616, 17625, 17627, 17639, and 17643. Tested: h5committest and some additional checks on our FreeBSD as well as NCSA's machines.
* [svn-r17568] Purpose:Mike McGreevy2009-10-011-0/+2
| | | | | | | | | | | | | | | | | | | | | Configure Fix Description: Modified configure to set FC and CXX to "no" when fortran and c++ are not being compiled, respectively. This will prevent configure from running some checks on these compilers when they are not being used. This fixes a problem that was occuring when FC and/or CXX are set to a nonexistant or invalid compiler. Even if the languages were disabled, a libtool test would fail, thus preventing libtool from properly linking any libraries, yet configure would not flag an error message due to this because the languages were disabled. Tested: - h5committest (jam, smirom, linew) - manually eyeballed configure output and logfile.
* [svn-r17548] ↵Albert Cheng2009-09-291-0/+1
| | | | | | | | | | | | | | | | ------------------------------------------------------------------------ r17543 | acheng | 2009-09-28 23:43:22 -0500 (Mon, 28 Sep 2009) | 8 lines New test: (Bug ID 1656): Add new tests (tcheck_version, testcheck_version.sh) to verify H5check_version() does issue warnings and abort accordingly. Changed H5check_version() to suppress the warning message totally if $HDF5_DISABLE_VERSION_CHECK is 2 or higher. (Old behavior treated 3 or higher the same as 1, that is to print a warning and allows the program to continue. Tests: H5committed tested plus jam serial tested.
* [svn-r17540] Snapshot version 1.8 release 3 (snap12)Larry Knox2009-09-271-1/+1
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* [svn-r17501] Snapshot version 1.8 release 3 (snap11)Larry Knox2009-09-201-1/+1
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* [svn-r17499] Purpose:Albert Cheng2009-09-181-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Stage 2 implementation of embedded library information feature. H5.c: added code to print the embedded library information when there is a library versions mis-match occurs. This ensures the library information string is included in the executable. Also modifies the code so that the Library mismatch warning string is included only once in the executable. H5private.h: Added a global reference to the libinfo string variable to prepare for possible stage 3 implementation of a public API. test/testlibinfo.sh.in: A new test added to verify the library information is indeed included in the executables. configure.in: configure: Added entry to auto-generate test/testlibinfo.sh. H5detect.c: Modified the libhdf5settings generating code to allow it to insert the strings to a file other than stdout. This maybe needed in stage 3 implementation. MANIFEST: updated with the newly added file of testlibinfo.sh.in. Tested: h5committest passed. Also passed jam in serial mode.
* [svn-r17472] Snapshot version 1.8 release 3 (snap10)Larry Knox2009-09-131-1/+1
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* [svn-r17453] Snapshot version 1.8 release 3 (snap9)Larry Knox2009-09-061-1/+1
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* [svn-r17441] Purpose:Mike McGreevy2009-08-311-19/+26
| | | | | | | | | | | | | | | | | | | | | Merge from trunk Description: Merged revisions 17228 and 17440 from trunk to 1.8 Specifically, this brings support of --enable-static-exec flag into 1.8 Tested: Manually on jam, linew, smirom, liberty, plus h5committest. Currently, there is no automatic regression test that exists due to portability issues. Behavior is both different and undefined on certain systems (and while 'nm' command seems to exist on all machines, behavior is confirmed to be different on Mac, possibly others). Solution will be to set up some sort of framework in daily tests to build statically, remove shared paths, and verify executables can function.
* [svn-r17439] Purpose:Mike McGreevy2009-08-311-10/+10
| | | | | | | | | | | | | | | | | | | | | | Updating autotools Description: Bring revisions 17345 and 17357 from trunk to 1.8, specifically: - Automake upgraded to 1.11 - Autoconf upgraded to 2.64 - bin/reconfigure script edited to use new versions (on jam), and run to generate new configure script and Makefile.in's. - configure.in script edited to add "_cv_" to all AC_CACHE_VAL strings (in order to comply with new autoconf standard). - bin/install-sh script replaced with new version as provided by automake. Tested: - All issues on trunk were resolved, so only tested on jam and linew. Any other outliers should be caught by daily tests.
* [svn-r17437] Snapshot version 1.8 release 3 (snap8)Larry Knox2009-08-301-1/+1
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* [svn-r17410] Snapshot version 1.8 release 3 (snap7)Larry Knox2009-08-231-1/+1
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* [svn-r17387] I added a detection for the correctness of converting from ↵Raymond Lu2009-08-191-0/+50
| | | | | | | | | | unsigned long to float in the configure.in. The Pathscale compiler on Sandia's Linux machine misinterprets the values of unsigned long as negative during the conversion to float, when the first bit of unsigned long is on. Tested on jam. Need to test it on Sandia's machine.
* [svn-r17368] Snapshot version 1.8 release 3 (snap6)Larry Knox2009-08-161-1/+1
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