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* [svn-r13925] Purpose: intermediate checkin for offsetof fix for PGI compiler.Mike McGreevy2007-06-281-7/+37
| | | | | | | | | | Description: added new configuration to generate a pubconf file in the c++/src directory, H5cxx_pubconf.h. When C++ compiler recognizes 'offsetof', the macro H5_CXX_HAVE_OFFSETOF is defined in the new pubconf file. tested: kagiso, smirom
* [svn-r13913] Maintenance after beta2 release: used bin/h5vers script to ↵Elena Pourmal2007-06-251-1/+1
| | | | change version number to 1.8.0-beta2poat1
* [svn-r13909] Mainetnance before createing beta2 tar ballhdf5-1_8_0-beta2Elena Pourmal2007-06-251-1/+1
| | | | Changed version number to 1.8.0-beta2
* [svn-r13893] Maintenance: Bump up version to beta2pre2 after creating a tar ↵Elena Pourmal2007-06-201-1/+1
| | | | ball for remote testing
* [svn-r13892] Maintenance: Changed library version to beta2pre1 in ↵Elena Pourmal2007-06-201-1/+1
| | | | | | | preparation for remote testing for the HDF5 1.8.0-beta2 release Platforms tested: kagiso (small change done by bin/h5vers script)
* [svn-r13865] Purpose: Adding a new macro, H5_HAVE_OFFSETOF.Mike McGreevy2007-06-141-0/+7
| | | | | | | | Description: When the compiler has the __offsetof__ extension, the H5_HAVE_OFFSETOF macro will be defined. When the compiler does not have the extension, the macro will remain undefined. Tested: kagiso
* [svn-r13850] Description:Quincey Koziol2007-06-111-2/+2
| | | | | | | | | | | Hook "default VFD" configure macros into library. Also, make "default VFD" default to sec2 instead of nothing. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Mac OS X/32 10.4.9 (amazon)
* [svn-r13849] Purpose: adding a --with-default-vfd= flag to configuration.Mike McGreevy2007-06-111-0/+29
| | | | | | | | Description: this flag will define the macro H5_DEFAULT_VFD in src/pubconf.h and set it to be either H5FD_SEC2 or H5FD_STDIO, depending on the value set with the configuration flag (either sec2 or stdio). Tested: kagiso, smirom, linew
* [svn-r13846] Purpose: To remove changes from version #13839 (regarding ↵Mike McGreevy2007-06-081-20/+0
| | | | | | | | DEFAULT_VFD). Description: Changes made during this checkin need to be greatly modified, so I'm removing them now rather than leaving them in and fixing them later.
* [svn-r13839] Purpose: creation of a DEFAULT_VFD macro in the ↵Mike McGreevy2007-06-071-0/+20
| | | | | | | | | | | test/Makefile. Description: a new configure flag has been created that will now set a macro in the test/Makefile. The flag is with-default-vfd=. When set to a virtual file driver (e.g. "--with-default-vfd=sec2"), the macro DEFAULT_VFD will hold this value. Tested: kagiso, smirom, linew
* [svn-r13829] Some systems (only SGI Altix ProPack 4 discovered so far) ↵Raymond Lu2007-06-021-0/+31
| | | | | | | | | | | | doesn't return correct file size from MPI_File_get_size. Bypass this problem by replacing it with stat. Add an option --disable-mpi-size in configure to indicate this function doesn't work properly. Add a test in testpar/t_mpi.c, too. If it returns wrong file size, print out a warning. Tested on kagiso (parallel) because already tested the same change to v1.6 on several platforms (kagiso, cobalt, copper, and sol).
* [svn-r13814] Description:Quincey Koziol2007-05-291-0/+65
| | | | | | | | | | | | | | Change back to clearing memory buffers by default, but give users option to disable this, for performance reasons (--disable-clear-file-buffers). Also, add configure option (--enable-using-memchecker) to conveniently control making the library "play nice" with memory checking tools like valgrind and purify. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13716] updated the help message of the --enable-debug to reflect its ↵Albert Cheng2007-05-011-2/+3
| | | | | | default now depends on the setting of --enable-production.
* [svn-r13703] Feature:Albert Cheng2007-04-271-1/+11
| | | | | | | | Change --enable-debug default to no if producton is enabled. Platform tested: kagiso just doing configure with various combinations of option and varified the output.
* [svn-r13692] Snapshot version 1.8 release 0 (beta1post0)HDF Tester2007-04-231-1/+1
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* [svn-r13685] Description:Quincey Koziol2007-04-181-1/+1
| | | | Update the version string to "1.8.0-beta1post0"
* [svn-r13683] Description:hdf5-1_8_0-beta1Quincey Koziol2007-04-181-1/+1
| | | | | Change the release string for the beta1 release, so the tag in subversion is correct.
* [svn-r13633] PurposeAlbert Cheng2007-04-111-0/+3
| | | | | | | | | | New feature Description: Added test scripts to test the compiler scripts (h5cc, h5fc and h5c++) Tested platform: Kagiso (serial and pp)
* [svn-r13588] A support of files bigger than 2GB for STDIO driver. Configure ↵Raymond Lu2007-04-041-2/+2
| | | | | | | | will check if fseeko is available. Using it instead of fseek can support big files because the offset is of type off_t not long int. Also added the test for STDIO in big.c.
* [svn-r13523] DescriptionAlbert Cheng2007-03-161-4/+4
| | | | | | | | | Switch the default setting for configure from --enable-production/--disable-debug to --disable-production/--enable-debug. Platform Tested: In kagiso with fortran and C++. No commit test because changes happened in configure and it is straight forward.
* [svn-r13476] Snapshot version 1.8 release 0 (alpha6snap2)HDF Tester2007-03-081-1/+1
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* [svn-r13475] There's a configure issue linking szip's shared libraries when ↵Mike McGreevy2007-03-081-25/+48
| | | | | | | | | | | | running on kagiso. The static szip libraries are working as intended, but when shared szip libraries are present and intended for use they cannot be opened. A check has been implemented to test if shared szip libraries are functional on current platform. If they are not, and the user is trying to use them, szip is now disbaled and the user is informed. This issue occurs on kagiso, and the resolution was tested on kagiso.
* [svn-r13432] Changed the detection of alignment requirement for Direct I/O ↵Raymond Lu2007-02-281-40/+0
| | | | | | from configuration to run-time detection in H5FD_direct_open in H5FDdirect.c.
* [svn-r13355] Updated copyright notice to THG version.Albert Cheng2007-02-201-3/+4
| | | | | | Changed support email address to help@hdfgroup.org. Tested: Just visual verification since they are
* [svn-r13276] Snapshot version 1.8 release 0 (alpha6snap1)HDF Tester2007-02-111-1/+1
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* [svn-r13247] Replaced /bin/rm in configure with just rm. This should have ↵James Laird2007-02-061-5/+5
| | | | | | | | | no effect on any platform, since configure already uses rm, but it will prevent a bug in the (bizarre) case that a system has rm somewhere other than /bin. Tested on smirom and kagiso.
* [svn-r13225] Purpose: bug fix.Albert Cheng2007-01-301-0/+1
| | | | | | | | Description: The lone colon test left behind the a.out file. Added a /bin/rm to clean it up. Platform tested: Kagiso only since it is a trivial change.
* [svn-r13216] Snapshot version 1.8 release 0 (alpha6snap0)HDF Tester2007-01-291-1/+1
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* [svn-r13208] Changed the minor release string to alpha6snap0 for pre-alpha6 ↵Albert Cheng2007-01-271-1/+1
| | | | snapshot releases.
* [svn-r13198] Fiddled with the syntax of the configure test for srcdir="foo", ↵James Laird2007-01-251-4/+2
| | | | | | | | which should hopefully fix problems on copper and duty. Tested on copper, duty, kagiso, Cygwin.
* [svn-r13195] Snapshot version 1.8 release 0 (alpha5snap0)HDF Tester2007-01-251-1/+1
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* [svn-r13184] Changed release version to alpha5snap0 to restart snapshot release.Albert Cheng2007-01-231-1/+1
| | | | | Platforms tested: Eyeballed the svn diff output. Looked good.
* [svn-r13181] Added a configure check to prevent a failure on Cygwin.James Laird2007-01-231-0/+20
| | | | | | | | | | | | | | It seems that while Cygwin supports the time command, it has trouble with the syntax srcdir="../../hdf5/test" time ./testhdf5 and complains. The solution is to test the above case in configure and not to use the time command if it fails; Cygwin is fine with srcdir="../../hdf5/test" ./testhdf5 Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility problem since every platform but Cygwin is already fine with the current syntax.
* [svn-r13138] Description:Quincey Koziol2007-01-121-1/+1
| | | | | | | | | | | | | Auto-detect the support for the posix_memalign routine and disable the direct I/O VFD if posix_memalign is not supported. This should allow direct I/O to be auto-detected and disabled on FreeBSD. (Direct I/O itself works fine, but doesn't have the alignment requirements on FreeBSD that it has on Linux, so the code would have to be re-worked to not use posix_memalign and we don't need to support that right now). Tested on: FreeBSD/32 6.1 (duty) Linux/32 2.4 (kagiso)
* [svn-r13080] Description:Elena Pourmal2006-12-201-0/+9
| | | | | | | | | | | | | Maintenance for the HPUX 11.23 platform. Problem: C++ shared libraries are not supported for the 64bit mode (+DD64 compiler flag) Solution: Disable shared C++ library when +DD64 flag is detected. Platforms tested: sirius (HPUX 11.23 at UMKC) and kagiso
* [svn-r12929] Hopefully this really is a fix for the tg-login errors.James Laird2006-11-161-0/+4
| | | | | | | | | | | The version of libtool used by HDF5 isn't directly affected by the reconfigure script; instead, libtoolize --force must be used by hand. Libtool was the source of the problem, so rolling its version back to 1.5.14 should solve the issue (at least temporarily). Reconfigure should still work on both heping and kagiso. Tested on heping, kagiso, and tg-login3.
* [svn-r12887] A fix for linking issues.James Laird2006-11-101-17/+8
| | | | | | | | | | | | Should disable linking against shared libraries in Fortran for compilers that don't support shared libraries. Should also fix problem when the wrong Fortran file extension was specified. If these changes don't solve the Daily Test issues, I'll look at backing out the autotool version change until I have time to fix them. Tested on heping, kagiso, juniper.
* [svn-r12886] Fix (hopefully) for last night's failures on tg-login3.James Laird2006-11-091-0/+6
| | | | | | | | | | | | | | | | It seems that the latest version of libtool is linking against shared versions of the szip libraries in Fortran, rather than the static versions. ifort doesn't support shared libraries at all. To solve the problem, we avoid shared libraries entirely unless we're building shared Fortran libraries ourselves. If libtool always behaves like this now, it may cause similar problems on other machines. If you notice that a machine is breaking when it links against a shared library, let me know. Tested on kagiso; nothing new is broken. If Albert has time this afternoon I'll ask him to test on tg-login3 as well.
* [svn-r12870] Add a new macro H5_HAVE_DIRECT_ALIGN in configure.in. Some ↵Raymond Lu2006-11-061-1/+41
| | | | | | | systems like copper and sleipnir doesn't require alignment for Direct I/O. If this's true, write or read data just like sec2 does.
* [svn-r12741] Added support for direct I/O to check-vfd. The direct VFD is ↵James Laird2006-10-101-1/+6
| | | | | | | | | | only tested if it is enabled. Added Direct VFD status to the configure summary. Removed a line left over from pablo support. Oops!
* [svn-r12739] Added Direct I/O driver to VFD. It's only supported by SGI ↵Raymond Lu2006-10-101-0/+39
| | | | | | | | | | Altix (cobalt). There's a configure option --enable-direct-vfd/--disable-direct-vfd to enable/disable Direct I/O support. The default is enabled. There's a small test in test/vfd.c. Another way to test it is to set environment variable HDF5_DRIVER to "direct" and run "make check" in the test/ directory. There'll be some further improvement in the following checkin including allowing user to provide memory boundary value, file block size, and copying buffer size.
* [svn-r12715] Incorporated a user-submitted patch to better detect the 'tr' ↵James Laird2006-10-031-5/+15
| | | | | | | | | | | | utility and quote its arguments. Also checks for the 'socket' library on Solaris. If this patch passes the Daily Tests and makes the user happy, I'll port it back to the 1.6 branch. Tested on mir and sol.
* [svn-r12700] Alert:Quincey Koziol2006-10-021-22/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
* [svn-r12670] Snapshot version 1.8 release 0 (alpha5)HDF Admin2006-09-161-1/+1
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* [svn-r12669] Description:Quincey Koziol2006-09-151-0/+17
| | | | | | | | Use a slightly less efficient method of computing the log2() on SGI IRIX64, in order to avoid a compiler bug when optimizations are turned on. Tested on: SGI IRIX64 6.5 (atlantia)
* [svn-r12566] Description:Quincey Koziol2006-08-121-1/+1
| | | | | | | | Removed free space manager from "enable-debug=all" list of flags, it's not really designed for "user level" debugging. Tested on: FreeBSD 4.11 (sleipnir)
* [svn-r12491] Description:Quincey Koziol2006-07-221-1/+1
| | | | | | | | | | Refactored object deletion code for fractal heap to fix scaling problems. Passing all previous tests again now. Tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OS X (amazon)
* [svn-r12482] new tool h5copyPedro Vicente Nunes2006-07-191-0/+1
| | | | | | | | it uses the API function H5Gcopy to copy groups and datasets from file to file, read from a command line note: the test script is not finished yet tested on heping, copper, shanti
* [svn-r12478] Changed version number to 1.8.0-alpha5 after tagging ↵Elena Pourmal2006-07-171-1/+1
| | | | | | hdf5-1.8.0-alpha4 release with "hdf5_1_8_0_alpha4" tag.
* [svn-r12462] Committed a variety of metadata cache related changes:John Mainzer2006-07-131-0/+22
| | | | | | | | | | | | | | | | | | | | | | 1) Added trace file support to the metadata cache. This allows capture of all metadata cache calls in trace files for purposes of optimization and debuging. 2) Added an expunge entry function. This allows an entry to be deleteded from the cache without writing it to disk even if it is dirty. 3) Added a function call to resize pinned entries. 4) Added code to deal with entries that are dirty on load. This is needed in support of a bug fix which can alter object headers on load to repair files. 5) Added progress reporting code to the "MDC API smoke check" test in cache_api.c. To enable the progress reporting, set report_progress to TRUE in mdc_api_call_smoke_check(). Tested with h5committest, and a parallel test on phoenix (dual athelon linux box).
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