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* [svn-r21261] Description:Quincey Koziol2011-08-181-1/+2
| | | | | | | | Synchronize metadata journaling branch with changes from trunk. Tested on: Mac OS X/32 10.6.8 (amazon) (h5committest not required on this branch)
* [svn-r18426] Description:Quincey Koziol2010-03-181-29/+29
| | | | | | | | Rename "old" cache code and routines from H5AC to H5AC1. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug, prod & parallel (h5committest not required on this branch)
* [svn-r18168] Description:Quincey Koziol2010-01-261-11/+9
| | | | | | | | | | | | Code cleanups for better alignment with trunk, along with style issues, etc. Also, get journal test files to work correctly when using a srcdir build. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug, production & parallel (h5committest not required on this branch)
* [svn-r16383] A number of items, mostly related to the use of the core file ↵John Mainzer2009-01-301-0/+26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | driver in metadata cache tests. 1) Fixed the core file driver failures previously observed on some platforms when running the cache2 tests with the core file driver enabled. This was done by allocating all needed memory on file open. 2) Added code to cache2.c to allow the use of the core file driver to be forced via the HDF5_DRIVER environment variable. 3) Added code to try to figure out whether using the core file driver in cache2 makes sense, and then use it or not as seems appropriate unless overridden via the HDF5_DRIVER environment variable. This code only works under Linux and BSD (including MacOS). For now at least, we use regular files in all other cases unless directed otherwise. Note that this required a fair bit of configuration code massage. 4) Updated Makefile.am in examples to run the new mdj_api_example.c example. Forgot to "svn add mdj_api_example.c" before this checkin, but will do so shortly. Tested on: Duty (serial), Liberty (serial), tejeda (serial), jam (serial and parallel), and Phoenix (serial and parallel). Note that Phoenix is now 64 bit AMD64 Linux.
* [svn-r15922] Description:Quincey Koziol2008-10-211-1/+1
| | | | | | | | | | | | | | | | | | | Bring revisions 15289:15457 from trunk into metadata journaling branch. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.2 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15569] Incremented the subversion information from a1 to a2.Albert Cheng2008-09-011-1/+1
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* [svn-r15564] bin/release failed in creating the release tar file, complainingAlbert Cheng2008-08-311-1/+1
| | | | | | | | | | | | | | | /bin/tar: Argument list too long. After some digging, I found that the tar arguments list generated from MANIFEST was over 138940 bytes long. This was due to both more number of files (2153) in the manifest to be distributed and the version name (hdf5-1.9.8-metadata_journaling_a1) was a bit long. I changed the version name to hdf5-1.9.8-MDJ_a1 which is 16 bytes shorter, resulting the argument list to be 34448 bytes shorter. That seems acceptable to kagiso as the tar command ran successfully. So, I abbreviated the version name. This is a temporary fix. A real fix would be to use consecutive tar commands, each with a reasonably shorter list of arguments to generate the final tar file.
* [svn-r15555] Did Alpha1 release. Increase the version information to alpha2.Albert Cheng2008-08-291-1/+1
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* [svn-r15520] Change library version name to 1.9.8-metadata_journaling_a1 to ↵Albert Cheng2008-08-221-1/+1
| | | | | | prepare for an Alpha1 release.
* [svn-r15514] Purpose:Mike McGreevy2008-08-211-0/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - EOA logging update Description: - EOA values will now be written to the journal file in their own transaction when the EOA changes. - The EOA will be udpated in the HDF5 file's superblock before the recovery process begins. This should prevent some loss of raw data as the file won't be getting truncated upon file open as it will read the correct EOA value from the superblock. - Removed storing of EOA in journal entry messages since they're in their own transaction. - Updated tests to reflect change of transaction formats. Regenerated smoke test files to account for new entry types, and tweaked transaction number tests to reflect change in size of journal entries. - Large testfiles (in test/testfiles) should now unzip when ./configure is run. - When journal file is supplied but contains no complete transactions, instead of reporting an error, h5recover now informs the user of said nonexistant transactions, and opens/closes the hdf5 file with the journal recovered flag set. - Other various organizational changes to h5recover, included a bit more added to verbose output. Tested: - kagiso, smirom
* [svn-r15369] Changed the H5_VERS_SUBRELEASE to "metadata_journalingN" to ↵Albert Cheng2008-07-151-1/+1
| | | | | | | | identify this is a feature branch. H5committested.
* [svn-r15300] Description:Quincey Koziol2008-06-301-1/+1
| | | | | | | | | | | | | | | | | Bring revisions 15210:15289 from the trunk into the metadata journaling branch. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15295] Description:Quincey Koziol2008-06-301-1/+2
| | | | | | | | | | | | | | | | | Merge revisions 15130:15210 from trunk into metadata journaling branch Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15262] Description:Quincey Koziol2008-06-231-1/+3
| | | | | | | | | | | | | | | | | | Merge revisions 15037:15130 from trunk into metadata journaling branch Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.2 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15237] Description:Quincey Koziol2008-06-181-56/+125
| | | | | | | | | | | | | | | | | | Merge revisions 14900:15037 from trunk into metadata journaling branch Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.2 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15234] Description:Quincey Koziol2008-06-181-3/+3
| | | | | | | | | | | | | | | | | | Bring revisions 14800:14900 from trunk into metadata journaling branch Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.2 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15232] Description:Quincey Koziol2008-06-181-2/+20
| | | | | | | | | | | | | | | | | | Bring back revisions 14700:14800 from the trunk Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.2 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15231] Description:Quincey Koziol2008-06-181-8/+16
| | | | | | | | | | | | | | | | | | Merge revisions 14525:14700 from trunk into metadata journaling branch Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.2 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15221] Description:Quincey Koziol2008-06-161-3/+41
| | | | | | | | | | | | | | | | | | Bring changes from trunk from the time the branch was created (r14280) up to the 1.8.0 release (r14525) back into the metadata journaling branch. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14483] Added the new tool, h5recover, which is for the Sandia project forAlbert Cheng2008-02-011-0/+2
| | | | | | | file recovery after a crash. Tested: linux (kagiso), linux64 (smirom), Solaris 10 (linew, in progress).
* [svn-r14270] Description:Albert Cheng2007-11-201-70/+0
| | | | | | | | | | Removed the stream-vfd from the basic library code. (The stream-vfd source files are not removed yet but the MANIFEST has been updated to NOT release those stream-vfd source files.) Platforms tested: Kagiso and smirom. Then test the release tar ball in kagiso.
* [svn-r14215] Maintenance after 1.8.0-beta4: changed version number to ↵Elena Pourmal2007-10-211-1/+1
| | | | 1.8.0-beta4post1
* [svn-r14213] Maintenance for beta4 release: changed version number to be ↵hdf5-1_8_0-beta4Elena Pourmal2007-10-211-1/+1
| | | | | | 1.8.0-beta4 Platforms tested: kagiso only (trivial change using bin/h5vers script)
* [svn-r14211] Description:Quincey Koziol2007-10-181-21/+2
| | | | | | | | | | | | | | | | | | | | | | | | Remove --enable-hdfv1_6 configure flag, now that all dependencies on it have been removed and new --with-default-api-version=[v16|v18] and --disable-deprecated-symbols flags have taken its place. Update types in bin/trace so that bin/reconfigure runs cleanly. Run bin/reconfigure to regenerate configure script, along with other associated files, etc. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14097] Description:Quincey Koziol2007-08-211-0/+1
| | | | | | | | | | | | | First real use of API versioning code, H5E routines switched to use new API versioning scheme. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r14096] There're 3 changes in this checkin as below:Raymond Lu2007-08-201-0/+19
| | | | | | | | | | | | | | | | | | 1. In H5Dwrite and H5Dread, let the data buffer point to a fake address if the application passes in an empty buffer. This is mainly for MPIO programs that some processes may not have any data to write or read but still participate the I/O. This solution solves some MPI's problem like the ChaMPIon on tungsten which doesn't support empty buffer. 2. The ChaMPIon on tungsten doesn't support complex derived MPI data type correctly and collective I/O when some processes don't have any data to write or read correctly. Detect the compiler "cmpicc" in the system-specific config file and set the variables for these two cases to false. The PHDF5 library already has set up a way to switch collective chunked I/O to independent under these two cases. 3. A bug fix - During the work of the optimization for compound data I/O, the case for switching collective chunked I/O to independent I/O was leftout. Fixed it by adding I/O caching to it in H5D_multi_chunk_collective_io in H5Dmpio.c. Tested on tungsten, cobalt, and kagiso for parallel; on linew and smirom for serial.
* [svn-r14061] Purpose: Removing --disable-hsizet flag from configure.Mike McGreevy2007-08-091-24/+4
| | | | | | | Description: This flag causes problems for users and is difficult to support in the library. It has been removed. (see Bug 708). Tested: kagiso, linew
* [svn-r14047] Purpose: Adding H5_HAVE_SIGLONGJMP macro to configure.Mike McGreevy2007-08-071-1/+1
| | | | | | | Description: Configure will now detect the presence of the 'siglongjmp' function. If present, the macro H5_HAVE_SIGLONGJMP will be defined in src/H5pubconf.h. Tested: kagiso, smirom, linew
* [svn-r14027] Maintenance: changed version number to 1.8.0-beta3post1 using ↵Elena Pourmal2007-07-301-1/+1
| | | | bin/h5vers script
* [svn-r14025] Maintenance: Changed version number to 1.8.0-beta3, put warning ↵hdf5-1_8_0-beta3Elena Pourmal2007-07-301-1/+1
| | | | | | | into INSTALL file for the 1.8.0-beta* releases Tested: Release tar ball is available on the frp server, It was tested on kagiso with the PGI compilers.
* [svn-r14023] Purpose:Vailin Choi2007-07-271-1/+2
| | | | | | | | | | reorganization. Description: move the h5stat tool into its own directory. Platform tested: kagiso.
* [svn-r14022] Description:Quincey Koziol2007-07-261-3/+0
| | | | | | | | | | | | | | | | Remove stray reference to "group revision" configure flag Remove Windows-specific EOL characters from src/H5FDwindows.c Add some missing types to bin/trace Re-run bin/reconfigure script to regenerate information after changes above. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (linux) Solaris/32 2.10 (linew)
* [svn-r13972] Description:Quincey Koziol2007-07-131-0/+33
| | | | | | | | | Add --with-default-api-version configure flag. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13971] Description:Quincey Koziol2007-07-121-1/+28
| | | | | | | | | | | | | | Add --enable-deprecated-symbols configure option, to allow users to remove deprecated public API symbols at configure time. Add bin/make_vers script to bin/reconfigure actions. Run bin/reconfigure to regenerate autotool components. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13928] Purpose: 1) Moving H5_CXX_HAVE_OFFSETOF macro to ↵Mike McGreevy2007-06-291-17/+1
| | | | | | | | | | src/H5pubconf.h file. 2) Removing configuration of c++/src/H5cxx_pubconf.h file. Reasoning: the additional pubconf file caused compilation complications, this is cleaner. Tested: kagiso, smirom
* [svn-r13925] Purpose: intermediate checkin for offsetof fix for PGI compiler.Mike McGreevy2007-06-281-7/+37
| | | | | | | | | | Description: added new configuration to generate a pubconf file in the c++/src directory, H5cxx_pubconf.h. When C++ compiler recognizes 'offsetof', the macro H5_CXX_HAVE_OFFSETOF is defined in the new pubconf file. tested: kagiso, smirom
* [svn-r13913] Maintenance after beta2 release: used bin/h5vers script to ↵Elena Pourmal2007-06-251-1/+1
| | | | change version number to 1.8.0-beta2poat1
* [svn-r13909] Mainetnance before createing beta2 tar ballhdf5-1_8_0-beta2Elena Pourmal2007-06-251-1/+1
| | | | Changed version number to 1.8.0-beta2
* [svn-r13893] Maintenance: Bump up version to beta2pre2 after creating a tar ↵Elena Pourmal2007-06-201-1/+1
| | | | ball for remote testing
* [svn-r13892] Maintenance: Changed library version to beta2pre1 in ↵Elena Pourmal2007-06-201-1/+1
| | | | | | | preparation for remote testing for the HDF5 1.8.0-beta2 release Platforms tested: kagiso (small change done by bin/h5vers script)
* [svn-r13865] Purpose: Adding a new macro, H5_HAVE_OFFSETOF.Mike McGreevy2007-06-141-0/+7
| | | | | | | | Description: When the compiler has the __offsetof__ extension, the H5_HAVE_OFFSETOF macro will be defined. When the compiler does not have the extension, the macro will remain undefined. Tested: kagiso
* [svn-r13850] Description:Quincey Koziol2007-06-111-2/+2
| | | | | | | | | | | Hook "default VFD" configure macros into library. Also, make "default VFD" default to sec2 instead of nothing. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Mac OS X/32 10.4.9 (amazon)
* [svn-r13849] Purpose: adding a --with-default-vfd= flag to configuration.Mike McGreevy2007-06-111-0/+29
| | | | | | | | Description: this flag will define the macro H5_DEFAULT_VFD in src/pubconf.h and set it to be either H5FD_SEC2 or H5FD_STDIO, depending on the value set with the configuration flag (either sec2 or stdio). Tested: kagiso, smirom, linew
* [svn-r13846] Purpose: To remove changes from version #13839 (regarding ↵Mike McGreevy2007-06-081-20/+0
| | | | | | | | DEFAULT_VFD). Description: Changes made during this checkin need to be greatly modified, so I'm removing them now rather than leaving them in and fixing them later.
* [svn-r13839] Purpose: creation of a DEFAULT_VFD macro in the ↵Mike McGreevy2007-06-071-0/+20
| | | | | | | | | | | test/Makefile. Description: a new configure flag has been created that will now set a macro in the test/Makefile. The flag is with-default-vfd=. When set to a virtual file driver (e.g. "--with-default-vfd=sec2"), the macro DEFAULT_VFD will hold this value. Tested: kagiso, smirom, linew
* [svn-r13829] Some systems (only SGI Altix ProPack 4 discovered so far) ↵Raymond Lu2007-06-021-0/+31
| | | | | | | | | | | | doesn't return correct file size from MPI_File_get_size. Bypass this problem by replacing it with stat. Add an option --disable-mpi-size in configure to indicate this function doesn't work properly. Add a test in testpar/t_mpi.c, too. If it returns wrong file size, print out a warning. Tested on kagiso (parallel) because already tested the same change to v1.6 on several platforms (kagiso, cobalt, copper, and sol).
* [svn-r13814] Description:Quincey Koziol2007-05-291-0/+65
| | | | | | | | | | | | | | Change back to clearing memory buffers by default, but give users option to disable this, for performance reasons (--disable-clear-file-buffers). Also, add configure option (--enable-using-memchecker) to conveniently control making the library "play nice" with memory checking tools like valgrind and purify. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13716] updated the help message of the --enable-debug to reflect its ↵Albert Cheng2007-05-011-2/+3
| | | | | | default now depends on the setting of --enable-production.
* [svn-r13703] Feature:Albert Cheng2007-04-271-1/+11
| | | | | | | | Change --enable-debug default to no if producton is enabled. Platform tested: kagiso just doing configure with various combinations of option and varified the output.
* [svn-r13692] Snapshot version 1.8 release 0 (beta1post0)HDF Tester2007-04-231-1/+1
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