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* [svn-r14238] Bug fix: It's reported by the CGNS people. When an external ↵Raymond Lu2007-11-051-1/+1
| | | | | | | | | | link was opened twice, the library had some trouble to close in the end. The problem came from the field "holding_file" of H5O_loc_t. It's used to indicate special links like external links. The fix is to turn it off whenever H5O_open is called. Later the caller function should turn it on when it needs to. Tested on kagiso, linew, and smirom.
* [svn-r14215] Maintenance after 1.8.0-beta4: changed version number to ↵Elena Pourmal2007-10-211-11/+11
| | | | 1.8.0-beta4post1
* [svn-r14213] Maintenance for beta4 release: changed version number to be ↵hdf5-1_8_0-beta4Elena Pourmal2007-10-211-11/+11
| | | | | | 1.8.0-beta4 Platforms tested: kagiso only (trivial change using bin/h5vers script)
* [svn-r14211] Description:Quincey Koziol2007-10-181-49/+26
| | | | | | | | | | | | | | | | | | | | | | | | Remove --enable-hdfv1_6 configure flag, now that all dependencies on it have been removed and new --with-default-api-version=[v16|v18] and --disable-deprecated-symbols flags have taken its place. Update types in bin/trace so that bin/reconfigure runs cleanly. Run bin/reconfigure to regenerate configure script, along with other associated files, etc. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14097] Description:Quincey Koziol2007-08-211-2/+3
| | | | | | | | | | | | | First real use of API versioning code, H5E routines switched to use new API versioning scheme. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r14096] There're 3 changes in this checkin as below:Raymond Lu2007-08-201-24/+43
| | | | | | | | | | | | | | | | | | 1. In H5Dwrite and H5Dread, let the data buffer point to a fake address if the application passes in an empty buffer. This is mainly for MPIO programs that some processes may not have any data to write or read but still participate the I/O. This solution solves some MPI's problem like the ChaMPIon on tungsten which doesn't support empty buffer. 2. The ChaMPIon on tungsten doesn't support complex derived MPI data type correctly and collective I/O when some processes don't have any data to write or read correctly. Detect the compiler "cmpicc" in the system-specific config file and set the variables for these two cases to false. The PHDF5 library already has set up a way to switch collective chunked I/O to independent under these two cases. 3. A bug fix - During the work of the optimization for compound data I/O, the case for switching collective chunked I/O to independent I/O was leftout. Fixed it by adding I/O caching to it in H5D_multi_chunk_collective_io in H5Dmpio.c. Tested on tungsten, cobalt, and kagiso for parallel; on linew and smirom for serial.
* [svn-r14061] Purpose: Removing --disable-hsizet flag from configure.Mike McGreevy2007-08-091-47/+26
| | | | | | | Description: This flag causes problems for users and is difficult to support in the library. It has been removed. (see Bug 708). Tested: kagiso, linew
* [svn-r14047] Purpose: Adding H5_HAVE_SIGLONGJMP macro to configure.Mike McGreevy2007-08-071-2/+3
| | | | | | | Description: Configure will now detect the presence of the 'siglongjmp' function. If present, the macro H5_HAVE_SIGLONGJMP will be defined in src/H5pubconf.h. Tested: kagiso, smirom, linew
* [svn-r14027] Maintenance: changed version number to 1.8.0-beta3post1 using ↵Elena Pourmal2007-07-301-11/+11
| | | | bin/h5vers script
* [svn-r14025] Maintenance: Changed version number to 1.8.0-beta3, put warning ↵hdf5-1_8_0-beta3Elena Pourmal2007-07-301-11/+11
| | | | | | | into INSTALL file for the 1.8.0-beta* releases Tested: Release tar ball is available on the frp server, It was tested on kagiso with the PGI compilers.
* [svn-r14023] Purpose:Vailin Choi2007-07-271-3/+4
| | | | | | | | | | reorganization. Description: move the h5stat tool into its own directory. Platform tested: kagiso.
* [svn-r14022] Description:Quincey Koziol2007-07-261-3/+0
| | | | | | | | | | | | | | | | Remove stray reference to "group revision" configure flag Remove Windows-specific EOL characters from src/H5FDwindows.c Add some missing types to bin/trace Re-run bin/reconfigure script to regenerate information after changes above. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (linux) Solaris/32 2.10 (linew)
* [svn-r14021] Description:Quincey Koziol2007-07-261-1/+1
| | | | | | | | | | Re-ran bin/reconfigure Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Solaris/32 2.10 (linew)
* [svn-r13972] Description:Quincey Koziol2007-07-131-25/+71
| | | | | | | | | Add --with-default-api-version configure flag. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13971] Description:Quincey Koziol2007-07-121-25/+61
| | | | | | | | | | | | | | Add --enable-deprecated-symbols configure option, to allow users to remove deprecated public API symbols at configure time. Add bin/make_vers script to bin/reconfigure actions. Run bin/reconfigure to regenerate autotool components. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13928] Purpose: 1) Moving H5_CXX_HAVE_OFFSETOF macro to ↵Mike McGreevy2007-06-291-47/+25
| | | | | | | | | | src/H5pubconf.h file. 2) Removing configuration of c++/src/H5cxx_pubconf.h file. Reasoning: the additional pubconf file caused compilation complications, this is cleaner. Tested: kagiso, smirom
* [svn-r13925] Purpose: intermediate checkin for offsetof fix for PGI compiler.Mike McGreevy2007-06-281-83/+119
| | | | | | | | | | Description: added new configuration to generate a pubconf file in the c++/src directory, H5cxx_pubconf.h. When C++ compiler recognizes 'offsetof', the macro H5_CXX_HAVE_OFFSETOF is defined in the new pubconf file. tested: kagiso, smirom
* [svn-r13913] Maintenance after beta2 release: used bin/h5vers script to ↵Elena Pourmal2007-06-251-11/+11
| | | | change version number to 1.8.0-beta2poat1
* [svn-r13909] Mainetnance before createing beta2 tar ballhdf5-1_8_0-beta2Elena Pourmal2007-06-251-11/+11
| | | | Changed version number to 1.8.0-beta2
* [svn-r13893] Maintenance: Bump up version to beta2pre2 after creating a tar ↵Elena Pourmal2007-06-201-11/+11
| | | | ball for remote testing
* [svn-r13892] Maintenance: Changed library version to beta2pre1 in ↵Elena Pourmal2007-06-201-11/+11
| | | | | | | preparation for remote testing for the HDF5 1.8.0-beta2 release Platforms tested: kagiso (small change done by bin/h5vers script)
* [svn-r13865] Purpose: Adding a new macro, H5_HAVE_OFFSETOF.Mike McGreevy2007-06-141-2/+61
| | | | | | | | Description: When the compiler has the __offsetof__ extension, the H5_HAVE_OFFSETOF macro will be defined. When the compiler does not have the extension, the macro will remain undefined. Tested: kagiso
* [svn-r13850] Description:Quincey Koziol2007-06-111-1/+1
| | | | | | | | | | | Hook "default VFD" configure macros into library. Also, make "default VFD" default to sec2 instead of nothing. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Mac OS X/32 10.4.9 (amazon)
* [svn-r13849] Purpose: adding a --with-default-vfd= flag to configuration.Mike McGreevy2007-06-111-24/+62
| | | | | | | | Description: this flag will define the macro H5_DEFAULT_VFD in src/pubconf.h and set it to be either H5FD_SEC2 or H5FD_STDIO, depending on the value set with the configuration flag (either sec2 or stdio). Tested: kagiso, smirom, linew
* [svn-r13846] Purpose: To remove changes from version #13839 (regarding ↵Mike McGreevy2007-06-081-52/+25
| | | | | | | | DEFAULT_VFD). Description: Changes made during this checkin need to be greatly modified, so I'm removing them now rather than leaving them in and fixing them later.
* [svn-r13839] Purpose: creation of a DEFAULT_VFD macro in the ↵Mike McGreevy2007-06-071-25/+52
| | | | | | | | | | | test/Makefile. Description: a new configure flag has been created that will now set a macro in the test/Makefile. The flag is with-default-vfd=. When set to a virtual file driver (e.g. "--with-default-vfd=sec2"), the macro DEFAULT_VFD will hold this value. Tested: kagiso, smirom, linew
* [svn-r13829] Some systems (only SGI Altix ProPack 4 discovered so far) ↵Raymond Lu2007-06-021-24/+59
| | | | | | | | | | | | doesn't return correct file size from MPI_File_get_size. Bypass this problem by replacing it with stat. Add an option --disable-mpi-size in configure to indicate this function doesn't work properly. Add a test in testpar/t_mpi.c, too. If it returns wrong file size, print out a warning. Tested on kagiso (parallel) because already tested the same change to v1.6 on several platforms (kagiso, cobalt, copper, and sol).
* [svn-r13815] Description:Quincey Koziol2007-05-291-25/+98
| | | | Regenerate configuration files after latest checkin
* [svn-r13793] Pedro Vicente Nunes2007-05-221-1/+1
| | | | | | | | Clean temporary test files Tested: linux, SunOS Note: the files outside tools were generated by bin/reconfigure
* [svn-r13716] updated the help message of the --enable-debug to reflect its ↵Albert Cheng2007-05-011-25/+26
| | | | | | default now depends on the setting of --enable-production.
* [svn-r13703] Feature:Albert Cheng2007-04-271-2/+10
| | | | | | | | Change --enable-debug default to no if producton is enabled. Platform tested: kagiso just doing configure with various combinations of option and varified the output.
* [svn-r13692] Snapshot version 1.8 release 0 (beta1post0)HDF Tester2007-04-231-11/+11
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* [svn-r13685] Description:Quincey Koziol2007-04-181-11/+11
| | | | Update the version string to "1.8.0-beta1post0"
* [svn-r13683] Description:hdf5-1_8_0-beta1Quincey Koziol2007-04-181-11/+11
| | | | | Change the release string for the beta1 release, so the tag in subversion is correct.
* [svn-r13633] PurposeAlbert Cheng2007-04-111-1/+4
| | | | | | | | | | New feature Description: Added test scripts to test the compiler scripts (h5cc, h5fc and h5c++) Tested platform: Kagiso (serial and pp)
* [svn-r13616] This check-in updates the bin/reconfigure file to point to the ↵Mike McGreevy2007-04-091-11707/+4592
| | | | | | | | most recent versions of the autotools. Updated autotool versions are: autoconf 2.61, automake 1.10.0, and libtool 1.5.22. Tested on kagiso.
* [svn-r13615] Pedro Vicente Nunes2007-04-091-1/+1
| | | | | | | | | | | bug fixes substituted hize_t array index variables for int stack corruption in the h52gif reading routine, wrote a new routine shell script for gif tests, added check of program return value enabled the gif test script tested: linux pgcc, solaris, linux 64
* [svn-r13588] A support of files bigger than 2GB for STDIO driver. Configure ↵Raymond Lu2007-04-041-4/+6
| | | | | | | | will check if fseeko is available. Using it instead of fseek can support big files because the offset is of type off_t not long int. Also added the test for STDIO in big.c.
* [svn-r13523] DescriptionAlbert Cheng2007-03-161-5/+5
| | | | | | | | | Switch the default setting for configure from --enable-production/--disable-debug to --disable-production/--enable-debug. Platform Tested: In kagiso with fortran and C++. No commit test because changes happened in configure and it is straight forward.
* [svn-r13476] Snapshot version 1.8 release 0 (alpha6snap2)HDF Tester2007-03-081-11/+11
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* [svn-r13475] There's a configure issue linking szip's shared libraries when ↵Mike McGreevy2007-03-081-13/+88
| | | | | | | | | | | | running on kagiso. The static szip libraries are working as intended, but when shared szip libraries are present and intended for use they cannot be opened. A check has been implemented to test if shared szip libraries are functional on current platform. If they are not, and the user is trying to use them, szip is now disbaled and the user is informed. This issue occurs on kagiso, and the resolution was tested on kagiso.
* [svn-r13432] Changed the detection of alignment requirement for Direct I/O ↵Raymond Lu2007-02-281-94/+0
| | | | | | from configuration to run-time detection in H5FD_direct_open in H5FDdirect.c.
* [svn-r13359] Fixed a bug where the -shlib flag for h5cc would end up on the ↵James Laird2007-02-201-1/+1
| | | | | | | | Dependency line in the Makefile. Makefile change only. Tested on kagiso, to be used to test on cobalt.
* [svn-r13355] Updated copyright notice to THG version.Albert Cheng2007-02-201-76/+76
| | | | | | Changed support email address to help@hdfgroup.org. Tested: Just visual verification since they are
* [svn-r13276] Snapshot version 1.8 release 0 (alpha6snap1)HDF Tester2007-02-111-11/+11
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* [svn-r13247] Replaced /bin/rm in configure with just rm. This should have ↵James Laird2007-02-061-5/+5
| | | | | | | | | no effect on any platform, since configure already uses rm, but it will prevent a bug in the (bizarre) case that a system has rm somewhere other than /bin. Tested on smirom and kagiso.
* [svn-r13245] Added "superblock extension" object header to hold shared ↵James Laird2007-02-061-1/+1
| | | | | | | | | object header information, rather than storing it directly in the superblock. This should make future updates to the superblock much less painful. Tested on Windows, kagiso, and smirom.
* [svn-r13225] Purpose: bug fix.Albert Cheng2007-01-301-1/+2
| | | | | | | | Description: The lone colon test left behind the a.out file. Added a /bin/rm to clean it up. Platform tested: Kagiso only since it is a trivial change.
* [svn-r13216] Snapshot version 1.8 release 0 (alpha6snap0)HDF Tester2007-01-291-11/+11
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* [svn-r13208] Changed the minor release string to alpha6snap0 for pre-alpha6 ↵Albert Cheng2007-01-271-10/+10
| | | | snapshot releases.
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