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* [svn-r7180] Purpose:Quincey Koziol2003-07-071-11/+11
| | | | | | | | | | | Version update Description: Change from 1.4 compatibility to 1.6 compatibility. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r7177] Purpose:Quincey Koziol2003-07-071-4/+4
| | | | | | | | | | | | | | | Code cleanup/bug fix Description: Finish changing main development trunk back to default to production off and debug on. Solution: Run autoconf (which I forgot before :-) Platforms tested: FreeBSD 4.8 (sleipnir) h5committest not needed.
* [svn-r7166] Purpose:Quincey Koziol2003-07-031-9/+9
| | | | | | | | | | Update configuration Description: Now that we've split the tree (Yea!), change the main trunk back to debug on and production off. Also, change the version # to 1.7.0
* [svn-r7145] Purpose:Albert Cheng2003-07-031-13/+13
| | | | | | | | | | | | | update for release Description: Set the version information to 1.6.0-pre1 to get ready for v1.6 release. Platforms tested: h5committested. Misc. update:
* [svn-r7131] Purpose: Maintenance for the fifth round of testingElena Pourmal2003-07-011-9/+9
| | | | | | | | | | | Description: Bumped version number for 1.5.63 after creating a tar ball for the next round of testing Solution: Platforms tested: Misc. update:
* [svn-r7119] Purpose:Albert Cheng2003-06-281-5155/+4080
| | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: There was a bug fix for AIX machine when Poe is used to launch programs, that is in parallel mode. The fix is hostname dependent. Solution: Removed the hostname dependence and let the fix apply to all AIX machines. But put in a safety net--if $HDF5_AIX_NOPATCH is set to non-null, it will not use the fix but use the original code. (Don't expect this being used.) Platforms tested: Tested in Copper both with and without $HDF5_AIX_NOPATCH set. Did not run h5committest since this really applies to AIX systems only. Misc. update:
* [svn-r7108] Purpose:Quincey Koziol2003-06-261-30/+38
| | | | | | | | | | | | | Code cleanup Description: Make the default for the function stack work like the default for the API tracing: when debug is enabled, the function stack defaults to on and when debug is disabled, the function stack defaults to off. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r7099] Elena Pourmal2003-06-241-4083/+5150
| | | | | | | | | | | | | Purpose: Maintenance Description: Bumped the version number to 1.5.62 after creating a tar ball for the fourth round of testing. Solution: run bin/h5vers -s scipt on arabica Platforms tested: N/A Misc. update:
* [svn-r7093] Purpose:Bill Wendling2003-06-241-0/+201
| | | | | | | | | | | | | | | MPE Fix Description: The MPE stuff needed the lmpe library. Solution: Added it. Platforms tested: Copper (Small fix) Misc. update:
* [svn-r7090] Purpose:Bill Wendling2003-06-241-38/+547
| | | | | | | | | | | | | | | | | Update Description: Changed the --enable-mpe flag to --with-mpe so that we could specify the directory information for where the MPE stuff is kept. (with the =DIR option that we have for --with-* flags) Solution: 7% Platforms tested: Copper (where MPE is...small change no requiring h5committest). Misc. update:
* [svn-r7074] Purpose:Quincey Koziol2003-06-201-9/+9
| | | | Bump version # after another private snapshot for SAF team.
* [svn-r7061] Purpose:Quincey Koziol2003-06-181-9/+9
| | | | Bump version # after creating private snapshot.
* [svn-r7046] Purpose:Albert Cheng2003-06-181-3/+7
| | | | | | | | | | | | | | | | | | | | | bug fix Description: Parallel binary generated in copper could not run without first setting LIBPATH to some values. This is because libtool putting a very restrictive libray path into the generated library. Solution: There had been hack in before for the other IBM SP systems identified by hostname. Add copper to the list. Also, narrow down the hostname patter for Nersc Seaborg machine a little bit. Platforms tested: Copper parallel only since that is the only place it failed. Misc. update:
* [svn-r7044] Purpose:Albert Cheng2003-06-161-5060/+4014
| | | | | | | | | | | | | | | | | | | Bug fix. Description: the MPI_Get_count test does not work correctly (the macro name MPI_GET_COUNT_WORKS is not even used in source code.) For some reason, this test sometimes hangs in AIX. Solution: Blocked out the test for now and removed the code later when things are verified to be correct. Platforms tested: h5committested. ALso tested in Copper (32/64bit parallel, 32 bit serial). Misc. update:
* [svn-r7023] Elena Pourmal2003-06-111-4025/+5018
| | | | | | | | | | | | | Purpose: Maintenance for the third round of testing Description: Increased the version number to 1.5.59 after creating a tar ball for testing. Solution: Platforms tested: Misc. update:
* [svn-r7020] Purpose:Quincey Koziol2003-06-101-9/+9
| | | | Bump version number after making snapshot
* [svn-r6986] Snapshot version 1.5 release 56HDF Admin2003-06-061-9/+9
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* [svn-r6974] Purpose:Quincey Koziol2003-06-051-5018/+4025
| | | | | | | | Bump version # Description: Bump the version # of the library after creating snapshot for SAF developers to test with.
* [svn-r6905] Elena Pourmal2003-05-201-4025/+5018
| | | | | | | | | | | | Purpose: Maintenance for the second round of testing Description: Used bin/h5vers to change version number to 1.5.55 Solution: Platforms tested: arabica Misc. update:
* [svn-r6886] Purpose:Bill Wendling2003-05-171-9/+29
| | | | | | | | | | | | | | Update Description: GPFS should only be checked for if the --enable-gpfs flag is used. Otherwise, it shouldn't. Platforms tested: Linux (Configure only fix so only needed to test it to make sure the configure does the right thing and that the build won't break. I need to test it on a machine that has GPFS to make sure it works there...)
* [svn-r6879] Purpose:Bill Wendling2003-05-151-5012/+4019
| | | | | | | | | | | | | | | | | | Fix Description: The SZLIB stuff was being checked by default. This isn't right as not everyone will have SZLIB stuff. Solution: Made the default "no" instead of "yes" Platforms tested: Modi4 (Fortran & Parallel) Verbena (Fortran & C++) Arabica (Fortran) Misc. update:
* [svn-r6835] Elena Pourmal2003-05-081-4025/+5018
| | | | | | | | | | | | | Purpose: Maintenance Description: I changed release version to 1.5.54. Email about tetsing of 1.5.53 will be send after this checkins. Solution: used bin/h5vers -s to change the version number Platforms tested: Done on arabica Misc. update:
* [svn-r6797] Purpose:Bill Wendling2003-05-051-0/+8
| | | | | | | | | | | | | | | Feature Description: Added new flag to the H5pubconf.h file --- NO_SHARED_WRITING (H5_NO_SHARED_WRITING). It's only defined for CodeWarrior and should never be defined for other platforms unless the "open()" bug that CW has shows up on other platforms. Platforms tested: Verbena. Configure only, so no need for full tests. Misc. update:
* [svn-r6793] Snapshot version 1.5 release 52HDF Admin2003-05-031-9/+9
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* [svn-r6761] Snapshot version 1.5 release 51HDF Admin2003-04-261-9/+9
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* [svn-r6643] Snapshot version 1.5 release 50HDF Admin2003-04-121-9/+9
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* [svn-r6636] Purpose:Bill Wendling2003-04-111-0/+3
| | | | | | | | | | | | | | | Update Description: Added printing of the compiler used in the end message. Platforms tested: Modi4 (Parallel & Fortran) Burrwhite (Fortran & C++) Baldric (Fortran), but make check didn't work because of "libucb.so" error that I can't fix...) Misc. update:
* [svn-r6619] Purpose:Bill Wendling2003-04-091-27/+5
| | | | | | | | | | | | | | | | | | | Update Description: The "--enable-parallel=TYPE" option was revamped but the help string wasn't modified. Solution: Modified it to print out just "--enable-parallel" because we no longer support the "=TYPE" option. Platforms tested: arabica (Fortran) Modi4 (Parallel & Fortran) Burrwhite (Fortran & C++) Misc. update:
* [svn-r6586] Purpose:Bill Wendling2003-04-041-4941/+4464
| | | | | | | | | | | | | | | Fix Description: Previous changes in the configure were overwritten. Solution: Updated configure.in with the changes that were lost. Platforms tested: Linux & Modi4. Misc. update:
* [svn-r6583] Elena Pourmal2003-04-031-4464/+4942
| | | | | | | | | | | | | | | | | | | Purpose: New tool Description: Pankaj created h5import tool long time ago. I am finally checking the source code in for the 1.6 release. Known problems: h5import test will crash if srcdir option is used; will be fixed before the release. Solution: Platforms tested: vebena, arabica, modi4 were tested. h5import tests passed I also tested on arabica with srcdir option to make sure that there is a problem when srcdir is used. After that I disabled h5import tests. Daily tests will build h5import, but will not run h5import tests. Misc. update:
* [svn-r6575] Purpose:Quincey Koziol2003-04-031-18/+30
| | | | | | | | | | | | | | | | | | Code cleanup Description: Re-arranged configure output for external I/O filters to show that zlib and szlib are used for external I/O filters and display them with the output for the internal I/O filters. Solution: Platforms tested: FreeBSD 4.8 (sleipnir) Linux 2.4 (eirene) IRIX64 6.5 (modi4) Misc. update:
* [svn-r6549] Purpose:MuQun Yang2003-04-011-4/+452
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This is the first check-in message related to szip support at HDF5 1.6 release Description: szip compression support is required by NASA ESDIS. The compression algorithm is a good compression algorithm for scientific data. In HDF5, we add another filter function to make szip as a default compression package as we did for gzip(or zlib). Solution: In the configure.in and configure, I handled szip exactly the same as what zlib was built into the HDF5. Currently if you don't specify in the configure command line with: ./configure --with-szlib=/..... Unless you put your szip library in your path,you will build the same HDF5 library like before. Also, I only use static szip library to test with HDF5. Platforms tested: Since there are changes of configure.in and configure,I didn't use h5committest. I tested with four platforms. 1) Linux 2.4 (eirene) 2) Solaris 2.7(arabica) 3) windows 2000(VS 6.0) 4) SGI IRIX6.5-64(modi4) For test 1)-3), only basic C tests were done For modi4 test, I tested 64-bit C,parallel and fortran. ALl tests passed, except a warning message from szip library when checksum is used in some order, which doesn't cause any real problems. Misc. update:
* [svn-r6483] Snapshot version 1.5 release 49HDF Admin2003-03-151-9/+9
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* [svn-r6482] Purpose:Bill Wendling2003-03-141-1/+3
| | | | | | Update Description: Added newest ed_* directories in the docs...
* [svn-r6446] Snapshot version 1.5 release 48HDF Admin2003-03-011-9/+9
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* [svn-r6407] Snapshot version 1.5 release 47HDF Admin2003-02-151-9/+9
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* [svn-r6400] Raymond Lu2003-02-121-3/+3
| | | | | | | | | | | Purpose: Change feature Description: Switch to Fletcher32 from Adler32 checksum Platforms tested: arabica, eirene, modi4 Misc. update: MANIFEST and RELEASE.txt updated.
* [svn-r6389] Purpose:Bill Wendling2003-02-101-7/+12
| | | | | | | | | | | | Update Description: Added Flexible Parallel HDF5 support to the ending message that configure spits out. Reordered a few other of the messages so that they're in alphabetical order. Platforms tested: Linux
* [svn-r6386] Purpose:Quincey Koziol2003-02-101-0/+67
| | | | | | | | | | | | | | Bug fix Description: The "system scope" for threads isn't supported on all platforms. Solution: Add detection of this feature to the configure script and check for "H5_HAVE_SYSTEM_SCOPE_THREADS" in the appropriate places. Platforms tested: modi4 w/threadsafe
* [svn-r6383] Purpose:Quincey Koziol2003-02-071-4/+33
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | New feature for developers. Description: Added "function stack" tracing to library. This allows developers (there is no public API) to call H5FS_print within the library and get a listing of the functions traversed to reach that point in the library. Eventually, I may add support for reporting the parameters to each function also... Mainly for debugging parallel I/O programs, but I think it will come in handy in other cases also. The function stack tracking is controlled with a configure switch: --enable-funcstack, which defaults to enabled currently. When we branch for 1.6, we should change the default setting on the branch to be disabled. Also, added a destructor to the thread-specific keys when thread-safety is turned on in the library. Otherwise, they were leaking memory and causing difficult to debug errors in threaded programs (like the test/ttsafe test). Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) w/thread-safety enabled. Misc. update: Updated MANIFEST with new files added (src/H5FS.c & src/H5FDprivate.h) Update release_docs/RELEASE with thread-safety bug fix.
* [svn-r6375] Raymond Lu2003-02-041-1/+8
| | | | | | | | | | | Purpose: New feature Description: Added Adler32 checksum as a filter in pipeline Platforms tested: arabica (fortran), eirene (, C++), modi4 (parallel, fortran) Misc. update: Update release_docs/RELEASE.
* [svn-r6358] Snapshot version 1.5 release 46HDF Admin2003-02-011-9/+9
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* [svn-r6353] Purpose:Bill Wendling2003-01-301-0/+11
| | | | | | | | | | | Update Description: Updated the configure scripts. Fortran and C++ didn't have proper checks for Linux LFS support. Also needed to remove the "-g" flag from the compile line if --enable-production is set. For that, I took how it's being done in HDF5 Lite... Platforms tested: Linux
* [svn-r6317] Purpose:Bill Wendling2003-01-231-3/+47
| | | | | | | | | | | | | | | | | | Bug Fix Description: Some compilers were having problems if we included the -I/usr/include and -L/usr/lib flags which are completely redundant. This could occur if the user configured with something like: ./configure --with-zlib=/usr/include,/usr/lib Solution: Check if the --with-* command is specified with /usr/include and /usr/lib. If so, then don't place them in the compile macros. Platforms tested: Linux, Modi4
* [svn-r6293] Purpose:Albert Cheng2003-01-171-3/+5
| | | | | | | | | | Another patch Description: libtool will fail if pgcc compiler is used. Now apply the patch if gcc is NOT used. Platforms tested: Tested only on eirene because I am sure it is correct and am trying to beat the daily test checkout.
* [svn-r6285] Purpose:Albert Cheng2003-01-151-0/+14
| | | | | | | | | | | | | | | | | | | a patch Description: When intel compilers (icc, ecc) are used in a linux system, the libtool generated has a wrong setting of '$wl" for linking. Put in a "ed ..." command script to edit the generated libtool with the proper setting. The libtool people has fixed this problem. This can ben taken out when that version of libtool is released. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}? YES. Other platforms/configurations tested? platinum and titan using gcc and intel CC. Misc. update: Update MANIFEST if you add or remove any file. Update release_docs/RELEASE for bug fixes, new features, etc. Update applicable document files too.
* [svn-r6267] Snapshot version 1.5 release 45HDF Admin2003-01-111-9/+10
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* [svn-r6252] Purpose:Quincey Koziol2003-01-091-4/+79
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Lots of performance improvements & a couple new internal API interfaces. Description: Performance Improvements: - Cached file offset & length sizes in shared file struct, to avoid constantly looking them up in the FCPL. - Generic property improvements: - Added "revision" number to generic property classes to speed up comparisons. - Changed method of storing properties from using a hash-table to the TBBT routines in the library. - Share the propery names between classes and the lists derived from them. - Removed redundant 'def_value' buffer from each property. - Switching code to use a "copy on write" strategy for properties in each list, where the properties in each list are shared with the properties in the class, until a property's value is changed in a list. - Fixed error in layout code which was allocating too many buffers. - Redefined public macros of the form (H5open()/H5check, <variable>) internally to only be (<variable>), avoiding innumerable useless calls to H5open() and H5check_version(). - Reuse already zeroed buffers in H5F_contig_fill instead of constantly re-zeroing them. - Don't write fill values if writing entire dataset. - Use gettimeofday() system call instead of time() system when checking the modification time of a dataset. - Added reference counted string API and use it for tracking the names of objects opening in a file (for the ID->name code). - Removed redundant H5P_get() calls in B-tree routines. - Redefine H5T datatype macros internally to the library, to avoid calling H5check redundantly. - Keep dataspace information for dataset locally instead of reading from disk each time. Added new module to track open objects in a file, to allow this (which will be useful eventually for some FPH5 metadata caching issues). - Remove H5AC_find macro which was inlining metadata cache lookups, and call function instead. - Remove redundant memset() calls from H5G_namei() routine. - Remove redundant checking of object type when locating objects in metadata cache and rely on the address only. - Create default dataset object to use when default dataset creation property list is used to create datasets, bypassing querying for all the property list values. - Use default I/O vector size when performing raw data with the default dataset transfer property list, instead of querying for I/O vector size. - Remove H5P_DEFAULT internally to the library, replacing it with more specific default property list based on the type of property list needed. - Remove redundant memset() calls in object header message (H5O*) routines. - Remove redunant memset() calls in data I/O routines. - Split free-list allocation routines into malloc() and calloc()- like routines, instead of one combined routine. - Remove lots of indirection in H5O*() routines. - Simplify metadata cache entry comparison routine (used when flushing entire cache out). - Only enable metadata cache statistics when H5AC_DEBUG is turned on, instead of always tracking them. - Simplify address comparison macro (H5F_addr_eq). - Remove redundant metadata cache entry protections during dataset creation by protecting the object header once and making all the modifications necessary for the dataset creation before unprotecting it. - Reduce # of "number of element in extent" computations performed by computing and storing the value during dataspace creation. - Simplify checking for group location's file information, when file has not been involving in file-mounting operations. - Use binary encoding for modification time, instead of ASCII. - Hoist H5HL_peek calls (to get information in a local heap) out of loops in many group routine. - Use static variable for iterators of selections, instead of dynamically allocation them each time. - Lookup & insert new entries in one step, avoiding traversing group's B-tree twice. - Fixed memory leak in H5Gget_objname_idx() routine (tangential to performance improvements, but fixed along the way). - Use free-list for reference counted strings. - Don't bother copying object names into cached group entries, since they are re-created when an object is opened. The benchmark I used to measure these results created several thousand small (2K) datasets in a file and wrote out the data for them. This is Elena's "regular.c" benchmark. These changes resulted in approximately ~4.3x speedup of the development branch when compared to the previous code in the development branch and ~1.4x speedup compared to the release branch. Additionally, these changes reduce the total memory used (code and data) by the development branch by ~800KB, bringing the development branch back into the same ballpark as the release branch. I'll send out a more detailed description of the benchmark results as a followup note. New internal API routines: Added "reference counted strings" API for tracking strings that get used by multiple owners without duplicating the strings. Added "ternary search tree" API for text->object mappings. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} Other platforms/configurations tested? FreeBSD 4.7 (sleipnir) serial & parallel Solaris 2.6 (baldric) serial
* [svn-r6231] Purpose:Albert Cheng2003-01-031-4/+112
| | | | | | | | | | | | | | | new feature Description: Added MPICH/MPE instrumentation support. All source code are bracketed by the macro H5_HAVE_MPE. Use "--enable-mpe" to configure it in. Currently only worked in Eirene because the MPE library is not installed in all machines yet. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}? Yep. Other platforms/configurations tested? --enable-mpe feature tested in Eirene.
* [svn-r6221] Snapshot version 1.5 release 44HDF Admin2002-12-211-9/+9
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