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* [svn-r18659] Bug: 1764Albert Cheng2010-04-281-3/+16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: longjmp do not necessary restore signal that is blocked during the signal handling. This caused the Alignment test to fail quietly, resulting in wrong alignment information which will cause failures later. Solution: One can use sigsetjmp/siglongjmp to restore signal handling but not all systems such as Cray XT or VMS supports sigsetjmp. Backup solution is to use sigprocmask to reset the signal. Again, some systems may not support it either. Added code to try the first and then the second solution. Also added tests to verify if the signal_handler routines are working properly. Finally, added code to print results of the verification (in form of comments) to H5Tinit.c for inspection in case of failure. (Note that many platforms do not have alignment limits at all and ALIGNMNET code never raise the SIGBUS or SIGSEGV errors. In those cases, it does not matter whether the signal handlers work or not. Again, this can be deduced from the results comments near the end of the H5Tinit.c. If the sum of signal handlers called equals the total of verify, it means ALIGNMENT does not raise any signals.) For configure.in and configure: Added the test for setjmp, sigsetjmp, sigprocmask which are used by the H5detec.c. Tested: htcommittested, jam(serial).
* [svn-r18648] In H5T_get_native_type of H5Tnative.c, I changed the way that ↵Raymond Lu2010-04-271-1/+4
| | | | | | | | | the offset, alignment, and size of nested compound type are calculated by using H5T_cmp_offset. The old way had a bug in it (see bug #1850). Tested on jam. I tested the same change for 1.8 on amani, linew, and jam.
* [svn-r18634] Description:Quincey Koziol2010-04-271-1/+46
| | | | | | | | | | | | | | | | | | | | | Clean up compiler warnings. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18589] Snapshot version 1.9 release 67HDF Tester2010-04-181-10/+10
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* [svn-r18579] Purpose:Mike McGreevy2010-04-151-117/+148
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Autotool Upgrade / Libtool Bug Fix Description: Updated autotools referenced in bin/reconfigure as follows: Autoconf 2.64 --> Autoconf 2.65 Automake 1.11 --> Automake 1.11.1 Libtool 2.2.6a --> Libtool 2.2.6b-mcg The referenced libtool version is a custom version of 2.2.6b. It has been tweaked to fix a bug in libtool that occurs when using PGI 10.0 compilers. A check incorrectly categorizes the C++ compiler as version 1.0 instead of 10.0, and the link line is subsequently set up incorrectly and fails to compile. A patch has been made available and will be included in the next release of libtool, but in the meantime I've applied the patch to a custom installation as indicated above. This bin/reconfigure now references the custom installation, and the resulting configure script will correctly categorize the PGI 10.0 C++ compiler. Ran bin/reconfigure to regenerate configure and makefiles. Tested: jam and amani with PGI 10.0 compilers. h5committest
* [svn-r18545] Snapshot version 1.9 release 66HDF Tester2010-04-111-11/+11
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* [svn-r18508] Snapshot version 1.9 release 65HDF Tester2010-04-041-10/+10
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* [svn-r18469] bug fix:Albert Cheng2010-03-301-1/+1
| | | | | | | | | | | | | | recent changes to the embedded library generation code does not quite work for the AIX system. The strings command of AIX does not display the embedded library information be default. Solution: Changed the H5libhhdf5_setting[] to be an extern variable. Also removed the const qualifier so that strings can see the variable data. Tested: Blue-print (with embedded-libinfo enabled and disabled). Also tested in Jam.
* [svn-r18465] Snapshot version 1.9 release 64HDF Tester2010-03-281-11/+11
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* [svn-r18432] Snapshot version 1.9 release 63HDF Tester2010-03-211-11/+11
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* [svn-r18420] Description:Quincey Koziol2010-03-181-8/+5
| | | | | | | | | Re-run bin/reconfigure to catch up with recent rearrangements, remove some unused srcdir headers and duplicated code in main test header. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & prod Linux/32 2.6 (jam)
* [svn-r18415] Description:Quincey Koziol2010-03-181-1/+1
| | | | | | | | | | Move the libhdf5.settings information out of src/H5Tinit.c and into a separate header file (src/H5lib_settings.h), which is generated at build time (not configure time) with the src/H5make_libsettings generator program. Tested on: Linux/32 2.6 (jam) Mac OS X/32 10.6.2 (amazon)
* [svn-r18413] Description:Quincey Koziol2010-03-171-2/+8
| | | | | | | | | | | | | | Unify srcdir handling for test executables and allow them to use the srcdir setting from configure time without requiring the 'srcdir' environment variable be set (although you still can, to override the built in setting). Attempted to get this right for Windows builds also. Also add dependency between src/H5Tinit.c and src/libhdf5.settings, so that the test/testcheck_version.sh script works correctly. Tested on: Linux/32 2.6 (jam) Mac OS X/32 10.6.2 (amazon)
* [svn-r18406] Snapshot version 1.9 release 62HDF Tester2010-03-141-11/+11
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* [svn-r18350] Snapshot version 1.9 release 61HDF Tester2010-02-281-10/+10
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* [svn-r18258] Rename the following files:Vailin Choi2010-02-151-1/+1
| | | | | | | | | h5stat_newgrat-A.ddl --> h5stat_newgrat-UA.ddl h5stat_newgrat-G.ddl --> h5stat_newgrat-UG.ddl h5stat_filters-D.ddl --> h5stat_filters-UD.ddl h5stat_filters-T.ddl --> h5stat_filters-UT.ddl h5committested.
* [svn-r18217] Snapshot version 1.9 release 60HDF Tester2010-02-071-11/+11
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* [svn-r18199] Snapshot version 1.9 release 59HDF Tester2010-01-311-10/+10
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* [svn-r18193] I added a test for copying an existing DCPL and using the copy ↵Raymond Lu2010-01-291-1/+1
| | | | | | | | | to create a new dataset. There's a bug report (#1608) saying h5repack failed to do that sometimes. But I couldn't reproduce it. So I added this test and closed the report. The test is in the function test_copy_dcpl in dsets.c. Tested on jam. But I tested the same change in 1.8 on jam, amani, and linew.
* [svn-r18120] Snapshot version 1.9 release 58HDF Tester2010-01-171-10/+10
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* [svn-r18107] bug 1673:Albert Cheng2010-01-121-1/+1
| | | | | | | | | | | | | | The mixed use of RUNTEST (original) and RUNTESTS (new) caused confusion. E.g., the timings in test/ was still using the old $RUNTEST. It made more sense to use $RUNTEST which is used by the dejagnu feature of automake. So, I changed all $RUNTEST or $RUNTESTS to $RUNEXEC. config/commence.am & config/conclude.am are the two files that got changes. Also fixed an error in test/Makefile.am. The rest are changed by bin/reconfigure. Tested: h5committested.
* [svn-r18100] SnapshotHDF Tester2010-01-101-10/+10
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* [svn-r18072] Description:Quincey Koziol2010-01-071-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r18071 from metadata journaling merge branch: Refactor local heap routines with changes from metadata journaling branch, along with other misc. changes as the changes on the metadata journaling branch are being converged with the current state of the trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18059] SnapshotHDF Tester2010-01-031-11/+11
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* [svn-r18047] SnapshotHDF Tester2009-12-201-11/+11
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* [svn-r18012] SnapshotHDF Tester2009-12-131-11/+11
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* [svn-r17973] SnapshotHDF Tester2009-12-071-11/+11
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* [svn-r17939] Description:Quincey Koziol2009-12-011-2/+15
| | | | | | | | | | | | | | | | | | | | | | | Handle external links from symlinked files by adding another check to look for "child" files for links from the actual location of the "parent" file, instead of from the location of the symlink. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17924] Description:Quincey Koziol2009-11-231-16/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Add detection for POSIX lstat() routine to configure script (mostly for non-UNIX/Linux machines) and add macro wrapper for it. Alphabetatize the system/library calls we test for, to make them easier to read. Removed the sigaction() detection & macro wrappers, since it's not used by the distribution currently. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17902] SnapshotHDF Tester2009-11-171-11/+11
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* [svn-r17742] Snapshot version 1.9 release 50HDF Tester2009-10-251-11/+11
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* [svn-r17724] Merge change from 1.8 branch to trunk that removes ↵Larry Knox2009-10-221-2/+2
| | | | | | -D_POSIX_SOURCE from CPPFLAGS in h5cc. Tested: amani, jam, linew (h5committest).
* [svn-r17675] Purpose:Mike McGreevy2009-10-191-31/+44
| | | | | | | | | | | | | Configure Cleanup Description: Make all AM_CFLAGS visible in CFLAGS during configure so all checks have full visibility of any set flags. Tested: h5committest
* [svn-r17670] Snapshot version 1.9 release 49Larry Knox2009-10-181-11/+11
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* [svn-r17663] Purpose:Mike McGreevy2009-10-161-238/+27
| | | | | | | | | | | | | | | | | | | | | | | | | | | configure cleanup Description 1. Removed check that disables shared libraries when pgcc is used. Apparently they previously did not work with libtool 1.5.14 and on mir, neither of which is in use anymore. Testing on jam and amani appear fine, so this check is unnecessary. 2. Removed check that disables shared C++ libraries when -xarch is used to enable 64 bit mode. We now use m64 flag to build 64 bit binaries, so we shouldn't explicitly disable shared C++ libraries if -xarch is discovered. 3. Removed old configure output summary section from configure.in, since we now use the libhdf5.settings file. 4. Updated powerpc-ibm-aix5.x config file to once again put c99 flag into H5_CFLAGS (and thus NOT get into h5cc), as decided in our dev meeting. Tested: h5committest full build with pgcc on jam / amani
* [svn-r17654] Purpose:Mike McGreevy2009-10-151-35/+35
| | | | | | | | | | | | Configure cache-val cleanup Description: Corrected some misnamed cache values in configure / config files. Tested: h5committest
* [svn-r17647] Maintenance: Configure didn't cleanup Fortran module file; fixed.Elena Pourmal2009-10-151-2/+2
| | | | | | | Platforms tested: jam (trivial change) Note: Most of the Fortran compilers create module files with "mod" extension. In the past, I believe, there were systems (Cray?) that used different extensions. We should add those to the current fix when we find them.
* [svn-r17643] Purpose:Mike McGreevy2009-10-141-39/+37
| | | | | | | | | | | | | | | | | | | Configure / Config File Fixes Description: 1. Made AM_CPPFLAGS assignments in configure a bit safer. (i.e., check to ensure include paths exist before adding them to AM_CPPFLAGS). 2. Change AIX config file to add -D_LARGE_FILES into AM_CXXFLAGS instead of H5_CXXFLAGS (same with *_CFLAGS). This will propagate it into h5c++, where it is needed to compile correctly. 3. Added missing line containing AM_CFLAGS to configure output summary. Tested: h5committest, and uP (AIX machine, via Albert).
* [svn-r17639] Purpose:Mike McGreevy2009-10-131-27/+33
| | | | | | | | | | | | | | | | | | | | | | | | | | Configure Fix Description: uP (AIX Machine) was failing because configure needs to see -k flag in FCFLAGS for some checks to behave as intended. Since the config files were switched to passing all flags into H5_FCCFLAGS, this broke this behavior. To allow configure to see this again, FCFLAGS and all other user flags are saved before doing anything, and restored at the end of configure, so if needed we can set these values in configure and/or the config/ files without (permanently) overriding or changing anything a user sets. Also modified the powerpc-ibm-aix5.x config file to once again put -k into FCFLAGS in addition to H5_FCFLAGS (the former of which will be restored after configure completes the checks). Tested: h5committest (jam and amani finished, linew still running, though I wanted to get this in for daily tests since it needs to be run on uP for final verification).
* [svn-r17628] Snapshot version 1.9 release 48Larry Knox2009-10-111-11/+11
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* [svn-r17627] Purpose:Mike McGreevy2009-10-091-4/+4
| | | | | | | | | | | | | | | | | | | Couple quick configure cleanups Description: - Made a few AM_LDFLAGS assignments a bit safer. - Regenerated a couple Makefile.in's via bin/reconfigure to address some typo-fixes that didn't propagate in my last check-in. Tested: - h5committest - Also, I suspect this fix will address a failure on Sandia's clogin2 machine, but Albert currently has no password to gain access, so I have only minimal logs of the failure and no way to test it there. I'll just let the automated tests there determine if indeed I'm right.
* [svn-r17616] Purpose:Mike McGreevy2009-10-081-51/+102
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | CFLAGS overhaul Description: Modified the way configure handles CFLAGS. (note: all changes also apply to FCFLAGS, CXXFLAGS, CPPFLAGS, and LDFLAGS). 1. The configure process will now always preserve a user's CFLAGS environment variable setup. Any additional flags necessary for compilation added at configure time will be passed into the Makefiles as AM_CFLAGS, which is an automake construct to be used in addition to CFLAGS. This will allow a user to have the final say, as CFLAGS will always appear later in the compile line than AM_CFLAGS. Additionally, setting CFLAGS during make will no longer completely erase all flags set by configure, since they're maintained in AM_CFLAGS. 2. Additionally, where possible, flags previously being assigned directly into CFLAGS (and thus propagating into h5cc) have now been redirected into H5_CFLAGS, so they're used ONLY for compiling hdf5, and not embedded into the h5cc wrapper script as well. *Note that H5_CFLAGS ultimately is assigned into AM_CFLAGS for use in the Makefiles. Complete description of changes and build process will be included in a Configure Document that Elena and I are working on. 3. Removed unsupported config files. This includes: config/dec-osf* config/hpux11.00 config/irix5.x config/powerpc-ibm-aix4.x config/rs6000-ibm-aix5.x config/unicos* 4. Modified configure summary to display additional values. Specifically, appropriate AM_* variables are being shown, as well as H5_FCFLAGS and H5_CXXFLAGS, which were for some reason not already present. Tested: - H5committest - Tested on all THG / NCSA machines, using several combinations of the more prominent configure options (c++, fortran, szip, threadsafe, parallel, et cetera). (Thanks to Quincey for rysnc testing setup!) - With regards to new automated testing, anything *necessary* for compilation will be caught by the daily tests as it stands now. (i.e., if LDFLAGS is not properly set when szip is used, linking will fail). Additionally, with regards to which flags get into h5cc, if any *necessary* flags have been improperly removed, then daily tests should fail during make installcheck. Additional machine-specific desired behaviors and/or checks may have to be set up separately within the daily tests, so this is something to work on.
* [svn-r17589] Snapshot version 1.9 release 47Larry Knox2009-10-041-11/+11
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* [svn-r17582] Description:Quincey Koziol2009-10-021-5/+9
| | | | | | | | | | | | | | | | | | | | | Bring changes from file free space branch back to the trunk. *yay!* Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17567] Purpose:Mike McGreevy2009-10-011-27/+29
| | | | | | | | | | | | | | | | | | | | | Configure Fix Description: Modified configure to set FC and CXX to "no" when fortran and c++ are not being compiled, respectively. This will prevent configure from running some checks on these compilers when they are not being used. This fixes a problem that was occuring when FC and/or CXX are set to a nonexistant or invalid compiler. Even if the languages were disabled, a libtool test would fail, thus preventing libtool from properly linking any libraries, yet configure would not flag an error message due to this because the languages were disabled. Tested: - h5committest (jam, smirom, linew) - manually eyeballed configure output and logfile.
* [svn-r17542] New test:Albert Cheng2009-09-281-1/+2
| | | | | | | | Add new tests (tcheck_version, testcheck_version.sh) to verify H5check_version() does issue warnings and abort accordingly. Tests: H5committed tested plus jam serial tested.
* [svn-r17538] Snapshot version 1.9 release 46Larry Knox2009-09-271-10/+10
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* [svn-r17518] Description:Quincey Koziol2009-09-241-1/+1
| | | | | | | | | | | | | | | | | | | | | | Bring most of Vailin's changes to the fixed array data structure back to the trunk, including new regression test for data structure. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17502] Purpose:Albert Cheng2009-09-211-2/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Stage 2 implementation of embedded library information feature. H5.c: added code to print the embedded library information when there is a library versions mis-match occurs. This ensures the library information string is included in the executable. Also modifies the code so that the Library mismatch warning string is included only once in the executable. H5private.h: Added a global reference to the libinfo string variable to prepare for possible stage 3 implementation of a public API. test/testlibinfo.sh.in: A new test added to verify the library information is indeed included in the executables. configure.in: configure: Added entry to auto-generate test/testlibinfo.sh. H5detect.c: Modified the libhdf5settings generating code to allow it to insert the strings to a file other than stdout. This maybe needed in stage 3 implementation. MANIFEST: updated with the newly added file of testlibinfo.sh.in. Tested: h5committest passed. Additional tests: jam serial; jam --disable-embedded-libinfo; jam --disable-shared. All passed.
* [svn-r17446] Snapshot version 1.9 release 45Larry Knox2009-09-031-11/+11
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