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* [svn-r1532] ./configure.in [1.2, 1.3]Robb Matzke1999-07-231-1/+1
| | | | | | ./configure [REGENERATED] Changed $USER to `whoami` for setting the user name in libhdf5.settings.
* [svn-r1525] configure.in:Albert Cheng1999-07-221-646/+784
| | | | | | | | | | | | | | | | | | | | | | Added the checking for zlib and jpeg libraries when doing the -with-hdf4 option. HDF4 applications in general needs lib mfhdf, df, z, and jpeg. Removed the earlier alone test for jpeg. It conflicted with the hdf4 tests. Also, moved the hdf5-own library test for zlib after the hdf4 tests so that when hdf4 is used, the results would cover the zlib test. configure: derived from configure.in by autoconf. Platforms tested: IRIX 6.5, IRIX64 6.5, Solaris 2.6 (with default gcc, tested h5toh4 tool). Comments: This still generates compile commands that listed the "-lmfhdf ..." library list before the -L/usr/ncsa/lib. I traced the problem to the libtool. (I stopped at the door and dared not to enter this libtool cave. :-) Most compilers, except solaris' cc, tolerate the "duplicated" library list.
* [svn-r1505] Regenerated scriptQuincey Koziol1999-07-171-359/+442
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* [svn-r1500] Changed the default action for the search of HDF4 library and ↵Albert Cheng1999-07-161-1/+1
| | | | | | | header files to try locating them under /usr/ncsa/{lib,include} first. (/usr/ncsa/ is the default location for non-vendor software.)
* [svn-r1371] Robb Matzke1999-06-231-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Changes since 19990618 ---------------------- ./configure.in ./configure [REGENERATED] Now that compound struct conversions don't make so many calls to convert their members I turned the H5T debugging back on by default (it will still be disabled in a production version). ./src/H5AC.c ./src/H5B.c Made it possible to turn off messages about debugging these two packages using the same method as for all other packages. Just supply an invalid file descriptor number or use the shell to redirect said descriptor to /dev/null like this: $ HDF5_DEBUG=99,ac,b 99>/dev/null a.out ./src/H5T.c Changed the name of the old compound conversion function from `struct' to `struct(no-opt)' to be more consistent with the new version named `struct(opt)'. Fixed a bug in H5T_cmp() that caused any two VL types to compare as being equal. Removed duplicate code for bitfield comparisons in H5T_cmp(). ./src/H5Tconv.c Relaxed some constraints in the new compound conversion function so it applies to more cases. Also eliminated a memcpy in a tight loop. ./test/cmpd_dset.c Added a `--noopt' command line switch which unregisters the optimized compound conversion so we can test the non-optimized version.
* [svn-r1362] Robb Matzke1999-06-181-7/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Changes since 19990616 ---------------------- ./src/H5T.c ./src/H5Tconv.c All conversion functions take an extra argument called `stride' which is the number of bytes to advance the source and destination pointers after each element is converted. If the value is zero then the old behavior is preserved (source and destination values are packed). This feature was necessary to implement the compound datatype conversion optimizations and it causes a minor change to the API (application-defined type conversion functions take an extra size_t stride argument). ./src/H5Tconv.c An additional compound data type conversion function was added which is applied unless the destination type is larger than the source type. I'm measuring significant performance increases for certain operations: Test Name Struct-Conv Noop-Conv New(Old) MB/s New(Old) MB/s ---------- ------------- ------------- Reordering 2.062(0.3936) 54087(0.9047) Subsetting 2.901(0.6581) 40192(1.1100) Shrinking 1.976(0.3925) 33628(1.1500) ---------- ------------- ------------- ./test/dtypes.c Added various compound datatype conversion tests. Fixed return values from functions. ./src/H5T.c Conversion timers are updated only if H5T debugging is turned on a runtime (in addition to compile time). This allows the data type layer to be compiled with debugging support without having to pay a big runtime penalty if the debugging isn't actually used. ./src/H5A.c ./src/H5D.c ./src/H5Ofill.c ./src/H5P.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5Tpublic.h Added the stride argument to the H5T_convert() calls. The stride is always zero, which means that the source and destination data values are packed. ./configure.in ./configure [REGENERATED] If API tracing is turned off then libhdf5.settings will say `no' instead of nothing. ./test/flush1.c ./test/flush2.c Added better error messages in a couple places.
* [svn-r1328] Changes since 19990608Robb Matzke1999-06-111-153/+780
| | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./configure [REGENERATED] ./src/H5T.c ./src/H5Tpkg.h ./src/H5Tpublic.h ./src/H5config.h.in [REGENERATED] ./src/H5detect.c ./src/H5private.h Added checks for the C9x integer types like int32_t, int_least32_t, and int_fast32_t and the unsigned versions. HDF5 defines H5T_NATIVE_* versions (all caps) to be the same as the type provided by the C library, otherwise it defines them as integers exactly the specified size. Hardware type conversion functions are used when the types match some C-language type (like `int').
* [svn-r1315] Changes since 19990607Robb Matzke1999-06-081-242/+313
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./configure [REGENERATED] ./src/libhdf5.settings.in [NEW] ./config/conclude.in ./INSTALL ./MANIFEST A file called `libhdf5.settings' is installed along with the libraries and it contains a list of various things that might be of interest to someone using the library (such as what compiler/options were used and what other libraries might need to be linked to satisfy external references). We can add more things as it becomes necessary. Here's a sample... SUMMARY OF THE HDF5 CONFIGURATION ================================= HDF5 Version: hdf5-1.1.106 Configured on: Tue Jun 8 11:38:52 EDT 1999 Configured by: matzke@llnl.gov at Spizella Software Configure mode: development Host system: i686-pc-linux-gnulibc1 Byte sex: little-endian Libraries: static, shared Parallel support: mpicc Installation point: /usr/local Compiler: mpicc (egcs-2.91.66) Compiler switches: -Wall -g Extra libraries: -lmfhdf -ldf -lz -ljpeg -lm Archiver: ar Ranlib: ranlib Debugged Packages: d,e,f,g,hg,i,mm,o,p,s,v,z API Tracing: yes File addresses: large
* [svn-r1304] Added new H5Tvlen.c file to manifest. I don't recall changing ↵Quincey Koziol1999-06-041-394/+311
| | | | | | the configure script though... :-?
* [svn-r1284] Pass $AR setting to libtool. A cross-compiler (e.g., TFLOPS) wouldAlbert Cheng1999-05-261-1/+1
| | | | like use a "cross-compiling ar" to create the library archive.
* [svn-r1240] Changes since 19990427Robb Matzke1999-04-301-2/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./tools/h5ls.c Added a `--address' (`-a') switch which causes h5ls to display file addresses for raw data. For contiguous datasets it's just a nice simple number, but for chunked datasets it's a list of logical dataset coordinates, file addresses, filter masks, and storage sizes. Changed `--dump' switch to `--data'. ./src/H5D.c ./src/H5F.c ./src/H5Fprivate.h Enhanced the indexed-storage B-tree iterator so it can dump raw data addresses (and other info) to the standard error stream. Added H5Ddebug() so h5ls has a way to dump addresses for datasets. I'm not sure what else this API function should do, so I think we should discuss it before we document it. So far, h5ls is the only thing that uses it, and we can easily change that. ./src/H5Tconv.c ./test/dtypes.c Finally had a chance to verify Paul's H5T_conv_s_s (general string to string conversions) bug fixes and incorporate them into H5T_conv_f_f (general floating-point to floating-point conversions) and H5T_conv_i_i (general integer to integer conversons). Thanks Paul. ./src/H5D.c ./src/H5S.c ./src/H5Sprivate.h Added performance timers around data space read and write callbacks. They were already there for the gather/scatter callbacks. The timings for read/write callbacks are displayed along with gather/scatter when data space debugging is turned on. ./bin/iostats Updated to print totals. Added a `--fast' option that doesn't do any output except the totals and is much faster. ./bin/trace Changed __unused__ to UNUSED to match source code. ./config/gnu-flags Updated error message for pgcc. I've sent bug reports to the pgcc people but the new version still has the same bug. ./configure.in ./config/conclude.in ./config/depend.in Fixed dependencies for non-GNU makes when run in a directory other than the hdf5 source tree. Updated GNU `make dep' rules to copy the distributed dependencies for non-GNU makes into the source tree when run in some other directory.
* [svn-r1224] Changes since 19990426Robb Matzke1999-04-271-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./tools/h5tools.c ./tools/h5tools.h Finally fixed a long-standing bug that caused core dumps if a compound datum rendered to more than some number of characters (we kept bumping up the limit at the risk of violating stack size limits on some machines). The fix works only on systems that have the vsnprintf() function (otherwise a 4kB limit is imposed, which if violated probably dumps core). If vsnprintf() is present then the library dynamically allocates space for the output string. Also made it possible to control how compound data is rendered across multiple lines of output by allowing the caller to specify where optional line-breaks get inserted. The output functions split up the value at one or more optional line-breaks to prevent it from wrapping around the screen. If a datum doesn't fit on the current line but would fit on the next line then it is printed on the next line regardless of whether optional line-breaks would have prevent wrapping around the screen. This makes it easier to find the beginnings of compound data values. This feature is disabled by default but can be enabled by the application. If a datum doesn't fit on the current line and the previous datum also occupied more than one line then we move to the next line before printing. This makes it easier to find the beginnings of compound data values but prevents the output from looking fragmented if there are only a few long values among mostly short values. This feature is disabled by default but can be enabled by the application. The application can control the printf() formats used for all the native data types. The defaults are what the library used to use: %g, %ld, %lu, %d, and %u ./tools/h5ls.c Compound datatype values can now be split across multiple lines of output instead of just wrapping. Also, when lots of compound values are too long they all start at the beginning of a line. This only required about 10 lines of changes in the setup for tools library calls (I didn't modify the h5dump program because it uses its own version of the tools library that forked off long ago). Added code for Win32 which is unable to cast `unsigned long long' to `double'. If the dataset size exceeds (2^63)-1 then the percent utilization is not displayed (this is easily possible with chunked datasets). This is untested yet. ./configure.in ./src/H5config.h.in ./src/H5.c ./src/H5private.h Check for vsnprintf() and provide a simple, stupid definition if it isn't available. The stupid definition just calls vsprintf() and ignores the second argument. This can result in buffer overflows in h5ls and h5dump since vsprintf() is an unsafe function (and anyone can create an hdf5 file that runs an arbitrary command from h5ls and h5dump in that case)! ./config/conclude.in Remove more *.o files for `make clean' ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5I.c ./src/H5Iprivate.h ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5T.c ./src/H5TB.c Cleaned up a memory leak during H5_term_library() by allowing H5I_clear_group() to skip items that couldn't be freed. This allows the item to remain in the group until we can free it later. ./src/H5F.c The H5F_close_all() function fails if a file cannot be closed.
* [svn-r1174] INSTALL_parallel.ascired:Albert Cheng1999-04-081-1/+1
| | | | | | | | | Changed to use the mpio version by Daniel Sands. Added --disable-shared to ask for a non-shared version. configure: $AR was not passed to the creation of libtool. tflops uses xar instead of the generic ar.
* [svn-r1168] /configure.inRobb Matzke1999-03-301-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./configure [REGENERATED] ./src/H5D.c ./src/H5O.c Removed H5AC, H5B, and H5T from the default list of packages to debug (because they're pretty expensive debugging), and added H5O. Also fixed a bug for undefined variable in H5D when H5S debugging is turned on but H5T debugging is turned off. ./config/conclude.in Fixed installation of header files for building in a directory other than the source directory. This fixes a bug where H5config.h wasn't being installed. ./src/H5.c ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5I.c ./src/H5Iprivate.h ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5T.c ./src/H5TB.c ./src/H5Tprivate.h ./src/H5Z.c ./src/H5detect.c ./src/H5private.h Changed the way the library shuts down again. Now it handles cycles between packages and isn't so sensitive to dependencies between packages. A package might shut down only to be restarted to process a request from some other package being shut down. Loops are detected after 100 iteractions and the shutdown is aborted with a message on standard error. This also makes it a lot easier to debug. ./src/H5A.c Fixed H5A_write() and H5A_read() so they pass a non-null background buffer to the conversion functions. This is necessary when an attribute has a compound data type. ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c Reindented new Win32 stuff. ./src/H5Odtype.c Fixed a bug when enumeration types are used in a compound data type. The byte pointer wasn't incremented after the type information was written. ./tools/h5ls.c Compound data types display their total size because it's not always obvious from looking at the members. Scalar attributes show their space as `scalar' instead of `{}'. The index value is not printed for attributes that have only a few values. Instead the word `Data:' is printed on the first line of attribute data. Named types display their data type only if verbose output was requested.
* [svn-r1154] Changes since 19990322Robb Matzke1999-03-221-5/+14
| | | | | | | | | | | | | ---------------------- ./configure.in ./configure [REGENERATED] ./config/commence.in A few tweaks to the makefile rules for rebuilding makefiles. ./src/H5detect.c Fixed a really stupid mistake: resetting the signal handler after a longjmp(). This should fix Bob's SIGBUS on Solaris.
* [svn-r1152] *** empty log message ***Robb Matzke1999-03-191-1/+1
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* [svn-r1151] Changes since 19990318Robb Matzke1999-03-191-4/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./Makefile.in ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./config/commence.in ./config/conclude.in ./config/dec-osf4.x ./config/depend.in ./config/freebsd ./config/linux-gnu ./config/linux-gnulibc1 ./config/linux-gnulibc2 ./config/solaris2.x ./examples/Makefile.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in ./tools/testh5dump.sh Changes that allow hdf5 to be configured and compiled in a directory other than the source directory. This is especially useful if you want to concurrently compile with different compilers and/or compile flags, or if the hdf5 source is on read-only media like a CDROM. The changes were surprisingly easy ;-) Here's what you can do now... $ mkdir /tmp/build1 # or something $ cd /tmp/build1 $ /cdrom/hdf5/configure # where ever the source is $ make Paul, you'll have to change the testh5toh4 script similar to the way I changed testh5dump.sh. I started working on it but then gave up because of a number of problems: (1) I had to comment out all the tests that let h5toh4 choose the output file name because it always tried to put the output file in the same directory as the input file, (2) if path names are used during the h4 dump then they interfere with the diff. The test works fine when run in the source directory, but try this instead: $ gunzip <hdf5-1.1.67.tar.gz |tar xf - $ chmod -R ugo-w hdf5-1.1.67 $ mkdir build $ cd build $ ../hdf5-1.1.67/configure $ make check Dan, I didn't modify the pablo/Makefile.in because I have no way to test it. I think all you need to do is add a couple lines before the @COMMENCE@ line and add a couple search directories for header files. Anyway, it seems like almost an exact duplicate of the src/Makefile.in, so it shouldn't be a problem... ./Makefile.in Removes a few more temporary files during make clean and distclean. ./configure.in I fixed the creation of the time-stamp files so that the initial make doesn't have to regenerated all the makefiles (only GNU make users will see any change). ./src/H5R.c Changed a return type from `intn' to `int' for an API function. ./src/H5detect.c Added the volatile qualifier to a couple more variables. ./tools/h5tools.c Fixed a compiler warning about an unused local. ./tools/h5toh4.c Initialized `optind' to 1 because it's zero on my system. It should always be one on a unix system. ./tools/testh5toh4 Redirected "broken pipe" messages to /dev/null so outut is formatted correctly.
* [svn-r1149] ./configure.inRobb Matzke1999-03-181-54/+87
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5private.h Temporarily commented out the code that tries to link a simple MPI-IO application because I'm not sure how to pass $LDFLAGS and $LIBS to the compiler. Removed the `--enable-parallel=ibm' switch because the library we link with is either -lmpcc or -lmpcc_r but not both. The only way to tell is to see what compiler was specified (mpcc or mpcc_r) but if that compiler is specified then we don't need any libraries (the compiler script supplies them). That leaves just two choices: the user must use a compiler script: CC=mpcc ./configure or the user must state which library is desired: LDFLAGS='-lmpcc' ./configure --enable-parallel Checks for <setjmp.h>, longjmp(), and signal(). We don't check for setjmp() because it could be a macro (in fact, Posix requires it to be a macro) and if longjmp() is present then setjmp() is probably present too ;-) ./src/H5detect.c The alignment detection loop uses SIGBUS and setjmp/longjmp instead of fork/wait in order to get around bugs with forking in conjunction with mpich. This hasn't been tested on the SP-2 yet but it does work on the DEC Alpha. ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Changed the order that libraries are linked so -lhdf5 is always before $LDFLAGS.
* [svn-r1138] Changes since 19990304Robb Matzke1999-03-121-268/+307
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/*-aix4.* [REMOVED] ./config/*-aix4.x [NEW] ./config/solaris2.5 [REMOVED] ./config/solaris2.x [NEW] ./configure.in ./configure [REGENERATED] ./MANIFEST Changed the names of the IBM-SP2 config files by replacing the minor version numbers with an `x'. The solaris config warns about old versions of gcc. The RUNSERIAL value is set to the empty string by default. The config/* file (or user) can override it by setting it to some other value. The `--enable-parallel' with no flags turns on the HAVE_PARALLEL constant in the source code but doesn't add any MPI or MPI-IO libraries to the link line. If we are compiling for parallel then configure checks that we can actually link a very simple program. This has the benefit of detecting config errors before we waste time compiling the entire library. Configure recognizes `mpcc_r' as a parallel compiler. ./src/H5A.c ./src/H5Apublic.c Fixed some compiler warnings. Changed the return type of H5Aget_name() from hssize_t to ssize_t because the name can never be larger then memory.
* [svn-r1117] Changes since 19990303Robb Matzke1999-03-041-12/+24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./configure [REGENERATED] The path for a command is calculated explicitly the hard way because `type -path' isn't portable. ./config/freebsd ./config/linux-gnu ./config/linux-gnulibc2 Changed the way files reference each other. ./config/gnu-flags [NEW] ./config/dec-flags [NEW] These files figure out what flags to pass to certain compilers so we can reuse code in more than one config/* file. They also have better warning messages when old compilers are used. ./config/linux-gnulibc1 ./config/dec-osf4.x These files use the new *-flags files. ./src/H5D.c ./src/H5Onull.c ./src/H5Tconv.c ./tools/h5ls.c Fixed a compiler warning. ./src/H5detect.c Added a better comment to the top of the generated file.
* [svn-r1115] Changes since 19990302Robb Matzke1999-03-031-96/+105
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Improvements for parallel library. If you have a properly working mpicc you should be able to just say: $ CC=mpicc ./configure and you will see checking for mpirun... /usr/local/mpi/bin/mpirun checking for parallel support files... skipped checking how to run on one processor... /usr/local/mpi/bin/mpirun -np 1 checking how to run in parallel... /usr/local/mpi/bin/mpirun -np $$NPROCS To quote from the INSTALL file.... *** Parallel vs. serial library The HDF5 library can be configured to use MPI and MPI-IO for parallelizm on a distributed multi-processor system. The easy way to do this is to have a properly installed parallel compiler (e.g., MPICH's mpicc or IBM's mpcc) and supply that executable as the value of the CC environment variable: [NOTE: mpcc is not tested yet] $ CC=mpcc ./configure $ CC=/usr/local/mpi/bin/mpicc ./configure If no such wrapper script is available then you must specify your normal C compiler along with the distribution of MPI/MPI-IO which is to be used (values other than `mpich' will be added at a later date): $ ./configure --enable-parallel=mpich If the MPI/MPI-IO include files and/or libraries cannot be found by the compiler then their directories must be given as arguments to CPPFLAGS and/or LDFLAGS: $ CPPFLAGS=-I/usr/local/mpi/include \ LDFLAGS=-L/usr/local/mpi/lib/LINUX/ch_p4 \ ./configure --enable-parallel=mpich If a parallel library is being built then configure attempts to determine how to run a parallel application on one processor and on many processors. If the compiler is mpicc and the user hasn't specified values for RUNSERIAL and RUNPARALLEL then configure chooses `mpirun' from the same directory as `mpicc': RUNSERIAL: /usr/local/mpi/bin/mpirun -np 1 RUNPARALLEL: /usr/local/mpi/bin/mpirun -np $${NPROCS:=2} The `$${NPROCS:=2}' will be substituted with the value of the NPROCS environment variable at the time `make check' is run (or the value 2). ./testpar/Makefile.in Saying `make check' (or `make test') will run the tests on two processors by default. If you define NPROCS then that many processors are used instead: $ NPROCS=4 make check ./configure.in Fixed (hopefully) bugs with detecting whether __attribute__ and __FUNCTION__ are special keywords for the compiler. ./Makefile.in Saying `make install' from the top level directory shows instructions for using shared libraries. ./config/commence.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Moved the @top_srcdir@ into the makefiles because it was expanded too early and had the wrong value. ./INSTALL Added a warning that if the wrong version of hdf4 tools are installed then `make check' will fail in the tools directory.
* [svn-r1112] Changes since 19990301Robb Matzke1999-03-021-265/+586
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Reorganized and added some additional examples. ./MANIFEST ./aclocal.m4 [NEW] ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./bin/ltconfig [NEW] ./bin/ltmain.sh [NEW] Added tests to determine how to compile shared libraries and how to link programs with them before the libraries are installed. Also how to install and uninstall shared libraries. The configure step also prints the names of the config files it's trying to load for easier debugging. ./bin/config.guess ./bin/config.sub Replaced with a newer version from GNU. The changes we made to that file to report `irix6.x' and `FreeBSD' without version numbers have been incorporated into configure.in instead. In the future, do not change these two files (see the top of configure.in instead). By the way, this update was required to get shared libraries working. ./config/linux [REMOVED] ./config/linux-gnulibc1 [NEW] ./config/linux-gnu [NEW] ./config/alpha-dec [REMOVED] ./config/alpha-dec-osf4.0 [REMOVED] ./config/dec-osf4.x [NEW] ./config/irix5.3 [REMOVED] ./config/irix5.x [NEW] ./config/irix64 [REMOVED] ./config/freebsd Moved config files around to agree with output from the new config.guess. The linux file was split into gnu (RedHat), gnulibc1, and gnulibc2 versions. The alpha-dec file was removed (I think it was unused) and the alpha-dec-osf4.0 was changed to dec-osf4.x. The irix5.3 file renamed to irix5.x and the irix64 file was renamed to irix6.x. The freebsd file was changed to point to linux-gnulibc1. These changes were tested on: Linux 2.0 Linux 2.1 FreeBSD 3.2 Irix 5.3 Irix64 6.2 Irix64 6.4 HP/UX 10.20 OSF1 4.0 ./config/alphaev56-dec-osf4.x ./config/irix64 Added warnings similar to linux/freebsd about using compilers with known bugs. ./config/commence.in ./config/conclude.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Added definitions for shared libraries. This has been tested on the following systems: Linux 2.0 Linux 2.1 FreeBSD 3.2 Irix 5.3 Irix64 6.2 Irix64 6.4 HP/UX 10.20 static only OSF1 4.0 If you want to disable use of shared libraries (you probably do for development purposes since it takes a lot longer to compile and because you have to run dynamically linked programs in a special way if the library hasn't been installed) then add `--disable-shared' to the configure command line. This is all documented in the INSTALL file. ./bin/release Temprarily commented out the MANIFEST checking when running under svf since svf is about to be replaced by a newer version. This change only affects error checking during the release process. ./Makefile.dist ./Makefile.in Added `make check' which does the same thing as `make _test' since the former is endorsed by the GNU coding style and people are used to it. The old `make _test' still works too (and so does `make test' if you use GNU make).
* [svn-r1110] Changes since 19990226Robb Matzke1999-03-011-196/+238
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added instructions for using other compilers on Irix platforms. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5private.h The presence of <sys/sysinfo.h> and <sys/proc.h> is only checked on DEC/Alpha because there are too many problems including these headers on other systems. ./config/irix6.x ./config/irix64 Removed `-ansi' and added a comment. Converting an ASCII UTC date and time to a time_t value is not defined by ANSI or Posix but is available if we don't use `-ansi'. This allows the dataset modification time messages to be read properly by H5Gget_objinfo(). ./src/H5Tconv.c Fixed a compiler warning. ./test/dtypes.c ./test/hyperslab.c ./test/istore.c Fixed compiler warnings in printf() statements.
* [svn-r1108] Changes since 19990225Robb Matzke1999-02-261-298/+381
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added warnings and a disclaimer about GNU, DEC, Irix64, and NT compilers that generate incorrect machine code. ./configure.in ./src/H5private.h Detects and includes <sys/param.h> which is needed on FreeBSD before <sys/proc.h> even though we only really using anything from <sys/proc.h> on the DEC Alpha. ./config/irix64 Turned off warnings for duplicate definitions from the linker because -lnsl on irix has the same stuff in it as -lc. ./config/irix6.x Split up the CC and CFLAGS settings like with irix64 so that compilers besides `-n32' can be used. ./bin/snapshot The snapshots are tagged with names like hdf5-1_1_52 which is similar to the way the releases are tagged (cvs doesn't allow dots in tags). ./test/dtypes.c ./src/H5private.h ./src/H5Tconv.c Fixed some alignment violations on the DEC when using high optimization levels. The DEC incorrectly optimizes certain memcpy() and memmove() calls when the source argument is not word aligned if the call looks like it's copying an atomic data type. ./test/hyperslab Worked around code generation bugs in the Irix64 Mongoose 7.00 compiler by casting some `unsigned long' values to `unsigned' in an expression. ./src/H5Ocomp.c Fixed a place where %d was used to print a size_t.
* [svn-r1070] Updated to do auto-configuration for parallel tests (testpar)Albert Cheng1999-02-161-13/+30
| | | | | too. Also used mpi function calls to test mpi libraries. Tested on O2K platform.
* [svn-r1065] Changes since 19990121Robb Matzke1999-02-151-193/+260
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./acconfig.h ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5public.h ./src/H5Omtime.c Check for <stddef.h> Checks for `__tm_gmtoff' in `struct tm' because old versions of GNU libc are different than recent versions. This fixes the failing mtime test. ./bin/config.guess ./config/freebsd2.2.7 [REMOVED] ./config/freebsd [ADDED] Changed the name so it works with all versions of FreeBSD. ./src/H5.c Moved H5F after H5T and H5G in H5_term_library() to satisfy dependencies. ./src/H5G.c Fixed a bug that caused H5Gcreate() to fail if the group name had trailing slashes. ./src/H5Gpublic.h Changed `group_name' to `name' in a prototype. ./src/Makefile.in Dynamic library on Linux, but needs for work to be generally useful. ./src/H5HG.c ./src/H5HGprivate.h Fixed alignment problems when using old GCC compilers (like the one shipped with RedHad Linux). ./tools/h5ls.c Fixed a bug where the contents of the root group could be listed twice if there was a link back to the root group. Similarly for groups that are mentioned on the command line. Fixed a bug where unknown types were printed with a random type class number. ./src/H5T.c ./src/H5Tconv.c ./src/H5Tprivate.h Fixed O(log N) conversion bugs.
* [svn-r1063] Added a feature to dump all the shell variables initial valuesAlbert Cheng1999-02-111-242/+247
| | | | | to the config.log file for debugging. Made change in configure.in and created configure via autoconf. Tested okay in an O2K.
* [svn-r1008] Changes since 19981217Robb Matzke1999-01-071-12/+11
| | | | | | | | | | | | | ---------------------- ./MANIFEST Removed some ddl files from tools/testfiles that are no longer part of CVS. Added new enum.c test. ./configure [REGENERATED] ./configure.in Changed printf long long format detection to favor `L' over `ll'.
* [svn-r968] Changes since 19981207Robb Matzke1998-12-141-191/+231
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST Added tcompound2.{dmp,h5} and tdset2.{dmp,h5} used by the h5toh4 testing. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Added check for <sys/timeb.h> for Win32. Determines sizeof(char) just so we have a complete list of type sizes defined as preprocessor symbols. ./src/H5detect.c ./src/H5T.c ./src/H5Tpkg.h Detects alignment constraints. In order for this to work the operating system must not correct unaligned data (for instance, on the DEC Alpha one might need to say `uac p sigbus' before running H5detect). ./src/H5private.h Includes <signal.h> because it's needed by H5detect.c to detect alignment constraints. ./src/H5Tconv.c Added extra checks to all hardware conversion functions so they align data when necessary before the conversion. This slows down the conversions somewhat but they're still much faster than the software conversions. ./test/dtypes.c By setting a constant at the top of the source you can test conversions where the data is aligned on various byte boundaries. By setting a constant at the top of the source you can simulate architectures that have alignment constraints on architectures that don't. Changed typo SIZEOF_LDOUBLE to SIZEOF_LONG_DOUBLE in a few places.
* [svn-r946] Changes since 19981121Robb Matzke1998-11-241-1/+1
| | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5Tconv.c With my poor eyesight I missed the definitions of SCHAR_MIN and SCHAR_MAX in <limits.h> and used CHAR_MIN and CHAR_MAX incorrectly. I changed all occurrences of the latter to the former and the new hardware integer type conversions now work on Irix. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5private.h ./src/H5.c ./test/h5test.c Added a wrapper for HDsnprintf() that just calls sprintf() if snprintf() isn't available. ./MANIFEST Added Paul's new h5toh4 files.
* [svn-r925] Changes since 19981116Robb Matzke1998-11-181-237/+600
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL.parallel [NEW] We're beginning to unify some of the parallel installation steps. This file will contain general information for installing the parallel library. It's not complete yet. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Check for xdr_int() in libnsl required on Solaris when linking with hdf4. It's found on the Irix system I tested which complains that `-lnsl' didn't resolve any symbols. Oh well. Fixed the order of searching for libdf and libmfhdf for hdf4 linking. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5Z.c Check for compress() in libz in order to find older versions of the library that will still work for hdf4. Added a separate check for compress2() that hdf5 will use. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5.c ./src/H5private.h ./src/H5A.c ./src/H5B.c ./src/H5Bprivate.h ./src/H5D.c ./src/H5F.c ./src/H5Farray.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5HG.c ./src/H5HL.c ./src/H5O.c ./src/H5Oattr.c ./src/H5Ocomp.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Ofill.c ./src/H5Olayout.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5Oprivate.h ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5R.c ./src/H5RA.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Snone.c ./src/H5Spoint.c ./src/H5Sprivate.h ./src/H5Sselect.c ./src/H5T.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5V.c ./test/bittests.c ./test/gheap.c ./test/hyperslab.c ./test/istore.c ./test/tmeta.c ./test/trefer.c ./test/tselect.c ./tools/h5debug.c ./tools/h5tols.c Added checks for Posix.1g types like `int8_t'. If not defined then H5private.h defines them. Changed all `int8' etc. to `int8_t'. ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5I.c ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5T.c ./src/H5TB.c ./src/H5Z.c Calling H5*_term_interface() resets interface_initialize_g to FALSE so a subsequent call to H5open() (implied or explicit) reinitializes global variables properly. ./src/H5private.h ./src/H5Oefl.c ./src/H5S.c Changed MAX_SIZET, MAX_SSIZET, MAX_HSIZET, and MAX_HSSIZET to SIZET_MAX, SSIZET_MAX, HSIZET_MAX, and HSSIZE_MAX to they match the Posix.1 constants in <limits.h>. ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5detect.c Added 36 more integer hardware conversion functions to the type conversion table for conversions to/from `long long' and `unsigned long long'. The `long long' names will be changed shortly to make them portable to Win32. Changed H5T_init() to H5T_native_open() and added an H5T_native_close() to open and close the predefined native data types. Increased the initial size of the type conversion table from 64 to 128 entries. Reordered the 90 new integer conversion functions so the names that are printed favor `int' over `short' or `long' when two of them are the same. ./test/dtypes.c Added hardware and software integer conversion tests for the 56 functions I added recently but not the additional 36 checked in this time. That will come next. Call H5close() after each test so type conversion statistics are easier to follow. Try this: $ HDF5_DEBUG=t ./dtypes Added more debugging output for when things go wrong. ./src/H5private.h Removed trailing carriage-returns inserted by broken operating system ;-)
* [svn-r914] Changes since 19981113Robb Matzke1998-11-161-276/+229
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/conclude.in ./test/Makefile.in ./tools/Makefile.in The Makefile $TESTS variable has finally been split into $TEST_PROGS and $TEST_SCRIPTS with the latter being the names of shell scripts that need to be run with `/bin/sh'. Now we don't have to copy each shell script before we run it. NOTE: THIS CHANGE DOES NOT AFFECT THE PABLO MAKEFILE SINCE THAT FILE IS A COPY OF A PREVIOUSLY GENERATED MAKEFILE. ./src/Makefile.in Added H5Snone.c to the source list. ./src/H5G.c Plugged a memory leak by emptying the object type "isa" table when the library is closed. ./src/H5Tconv.c ./src/H5Tpkg.h Added 48 new type functions to take advantage of hardware for integer type conversions. These functions are not registered in the conversion table yet because I haven't fully tested them. ./src/H5Tpkg.h Removed __unused__ qualifiers from prototypes.
* [svn-r907] Changes since 19981111Robb Matzke1998-11-131-249/+1065
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added instructions about specifying a path for GNU zlib and HDF4 headers and library. Added comments for each of the tool names. Added h5toh4 as a tool name. ./configure.in ./conigure [REGENERATED] ./src/H5config.h.in [REGENERATED] The config/* scripts get invoked with $CC_BASENAME set the base name of the compiler in order to make it easier to handle setting compiler flags for different compilers in a big case statement. For instance, if $CC has the value /usr/local/mpi/bin/mpicc -ansi -64 then $CC_BASENAME will be `mpicc'. The $CC_BASENAME is not set if $CC is not set. Fixed alignment in `configure --help'. An include and/or library path can be specified for GNU zlib if configure can't find it in normal places. The "normal" means wherever your compiler normally searches, including search paths you've added through environment variables like CPPFLAGS and LDFLAGS. The INSTALL file has instructions. The `-ljpeg' library is detected. If `ssize_t' is not found then a #define is added to H5config.h similar to what we already do for `size_t'. We detect the hdf5 header file `mfhdf.h' and libraries `-lmfhdf' and `-ldf' and if found define the H5TOH4 and TESTH5TOH4 Makefile variables. The user can specify an include and/or library path. The INSTALL file has instructions. The `RUNTEST' variable has been split into `RUNSERIAL' and `RUNPARALLEL' because these are different commands. The makefile still uses `RUNTEST', which defaults to the RUNSERIAL value. The new testpar/Makefile.in sets RUNTEST to the RUNPARALLEL value. The default RUNSERIAL value is empty and the default RUNPARALLEL value is `mpirun -np 2'. These can both be overridden in the config/* files. To make the value the empty string set it like `RUNPARALLEL=none' in the config/* file. The new testpar/Makefile is generated from testpar/Makefile.in ./config/commence.in Added the RUNSERIAL and RUNPARALLEL makefile definitions. ./src/Makefile.in The `H5detect' program is run with RUNSERIAL, which is empty on all platforms except intel-osf1 (ASCI/Red) ./config/conclude.in Removed the `.c.a:' implicit rule -- we don't use it any more. ./config/BlankForm ./config/alpha-dec ./config/alpha-dec-osf4.0 ./config/freebsd2.2.7 ./config/hpux10.20 ./config/hpux9.03 ./config/intel-osf1 ./config/irix5.3 ./config/irix6.2 ./config/irix64 ./config/linux ./config/powerpc-ibm-aix4.2.1.0 ./config/rs6000-ibm-aix4.1.4.0 ./config/solaris2.5 All of these files have been updated to hande multiple compilers. Most of them assume `cc' if CC is not set. The documentation in `BlankForm' has been updated and documentation in the other files refer to `BlankForm'. The intel-osf1 uses LDFLAGS instead of LIBS to specify the extra library search paths. ./examples/Makefile.in ./test/Makefile.in ./tools/Makefile.in Simplified by grouping some dependency information together more succinctly. The tools Makefile.in has been modified to work with the `h5toh4' and `testh5toh4' programs. Until Paul checks these in you may have problems compiling. If so, just create files h5toh4.c and testh5toh4.c that contain: #include <stdio.h> int main(int argc, char *argv[]) { fprintf(stderr, "%s: not implemented\n", argv[0]); return 1; } ./src/H5public.h Removed definition for `ssize_t' since this is now handled by configure in H5config.h with a #define. ./MANIFEST ./testpar/Makefile.in [NEW] Added a makefile for parallel tests. As soon as we get this working properly we can remove the other four makefiles in that directory and maintain just one.
* [svn-r883] Modified to cause creation of pablo/MakefileDan Wells1998-11-061-2/+2
|
* [svn-r879] Changes since 19981105Robb Matzke1998-11-061-98/+349
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./acconfig.h ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Added checks for functions, structs, constants, and header files used in h5ls.c to determine the output width with various Windows compilers and Unix variants. Added check for <sys/stat.h> and defined HAVE_SYS_STAT_H. Included <sys/stat.h> in H5private.h outside the Posix.1 #include's section. ./src/H5RA.c Less aggressive about failing -- rather returns false, which allows type detection to continue. ./src/h5ls.c Data types are displayed for datasets and named data types when `-v' or `--verbose' is specified on the command-line. The algorithm is a little different than the dumper because we're trying to be human-friendly, not necessarily machine-friendly. * Any data type which matches a native C type gets printed something like `native double'. * A floating point type that matches one of the IEEE standard types but not one of the native types gets printed like `IEEE 64-bit big-endian float'. * Other floating point values have information about sign bit location; exponent size, location, and bias; and significand size, location, and normalization. * Padding and offsets are displayed for types that have padding (precision != size), including internal padding for some floating point data types. * Non-native integer types are displayed like `32-bit little-endian unsigned integer'. * Compound data types have each member displayed including the member name, byte offset within the struct, dimensions, index permutation, and data type. * String types are displayed like `256-byte null-terminated ASCII string'. * References are displayed like `8-byte unknown reference' until the reference interface stabilizes a little. * All other types including types not yet defined will be printed like `4-byte class-9 unknown'. The dimensionality of scalar datasets is printed like `{SCALAR}' instead of just `{}'. If external raw files are used to store a dataset then the offsets, sizes, and file names of each are printed if `-v' or `--verbose' was given on the command-line. If an object is found and h5ls can't determine the object type then it still tries to print the number of hard links, the OID, and any comment that might be present if `-v' or `--verbose' was specified. If the `-d' or `--dump' switch is turned on then ragged arrays will report that the data can only be dumped by dumping the component datasets explicitly. I'm not planning to implement this since we're going to eventually change the whole way ragged arrays are stored. Compound data values do not have the component names displayed by default when `-v' or `--verbose' is turned on. Instead, the names can be displayed with `-l' or `--label'. The output width is determined by the first rule that applies: * If the `-wN', `-w N' or `--width=N' switch appeared on the command line then use N for the output width. * Query the OS for the tty width in a highly unportable way borrowed from GNU `less' depending on what functions and data structures were found during configuration (if any): _getvideoconfig(), gettextinfo(), _srcsize(), ioctl(), GetConsoleScreenBufferInfo(), struct videoconfig, struct text_info, the TIOCGWINSZ ioctl, the TIOCGETD ioctl. * If the `COLUMNS' environment variable is set then use its value. * Use the value 80. Just for kicks, run Mark and Jim's test_vbt and then say `h5ls -dlsv test.vbt'. You can also try it on the various *.h5 files in the test/example directories. ./config/linux Removed turning on parallel by default on Robb's macine.
* [svn-r859] Changes since 19981030Robb Matzke1998-11-021-96/+195
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST Added new Pablo files HDF5record_RT.h and ProcIDs.h ./acconfig.h ./configure [REGENERATED] ./configure.in ./src/H5.c ./src/H5Vprivate.h ./src/H5config.h.in [REGENERATED] ./src/H5private.h ./src/H5public.h ./test/big.c Added more configuration stuff for the Win32 environment. Removed all the #ifdef WIN32 from the source and replaced them with OS-independent stuff. Specifics follow: Check for non-Posix.1 `st_blocks' field in `struct stat' which is used by the big file test to decide if the file system supports holes. If the st_blocks field isn't present then we just skip the test. Configure checks for <io.h> <sys/resource.h> <sys/time.h> and <winsock.h> and defines HAVE_IO_H, HAVE_SYS_RESOURCE_H, HAVE_SYS_TIME_H and HAVE_WINSOCK_H when they're found. Configure checks whether both <sys/time.h> and <time.h> can be included and defines SYS_TIME_WITH_TIME if so. Otherwise include only <sys/time.h> or <time.h> even if both exist. Configure checks sizeof(__int64) and defines SIZEOF___INT64 to the result or to zero if __int64 isn't defined. The source uses `long long' in preference to `__int64'. Removed null WIN32 definition for `inline' since such a definition already exists in H5config.h Protected gettimeofday() calls in debugging code with HAVE_GETTIMEOFDAY instead of WIN32. ./src/H5F.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fsec2.c ./src/H5Fstdio.h ./src/H5P.c ./src/H5Tconv.c ./src/H5private.h Removed #include of system files from library source files and consolodated them into H5private.h where they're protected by various configuration macros (most of them were duplicated there already anyway). ./test/big.c ./test/chunk.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/extend.c ./test/external.c ./test/fillval.c ./test/flush1.c ./test/flush2.c ./test/iopipe.c ./test/links.c ./test/mount.c ./test/mtime.c ./test/overhead.c ./test/ragged.c ./test/shtype.c ./test/unlink.c Protected system #include's with #ifdef's from H5config.h. Undefined NDEBUG since some of the tests rely on assert() to check return values. Removed WIN32 definitions for __unused__ since this can be controlled by the definition of HAVE_ATTRIBUTE in H5config.h ./test/testhdf5.h Removed the CLEAN_CMD definition because we no longer use it. Albert's cleanup() functions replaced it. ./test/fillval.c Initialized auto hid_t variables to fix warnings in error recovery code when data flow analysis is turned on in compilers. ./test/h5tools.c Initialized an auto variable to fix a compiler warning. ./test/chunk.c ./test/ragged.c The WIN32 had some unsigned variables changed to signed because the compiler generates warnings when coercing unsigned to double(?). I changed them back to unsigned because they really are unsigned quantities. If this the change was just to shut up extraneous warnings then perhaps a compiler flag can do the same; otherwise if the compiler generates bad code then we should supply a patch file instead messing up source code with bug work-arounds. ./src/H5detect.c Protected system #include's with #ifdef's from H5config.h thereby removing a WIN32. If getpwuid() doesn't exist (HAVE_GETPWUID) then we assume that `struct passwd' doesn't exist either (we don't really need it in that case). The H5T_NATIVE_LLONG and H5T_NATIVE_ULLONG are defined in terms of `long long' or else `__int64' or else `long' depending on what's available. ./src/H5Flow.c ./src/H5Ofill.c Added __unused__ to some function arguments that aren't used when assertions are turned off. ./src/H5V.c Changed an auto variable name in some hand-inlined code to get rid of a warning about the variable shadowing a previous auto.
* [svn-r671] Changes since 19980904Robb Matzke1998-09-081-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./bin/release ./bin/snapshot The format of the MANIFEST file has been relaxed -- comments and blank lines should no longer confuse the tools that use it. As before, this file should contain a list of *all* files that are part of HDF5, which means all files which are managed by CVS/SVF. However, files can be marked so they're not part of a release by adding _DO_NOT_DISTRIBUTE_ after the file name. I've removed all the *.obj files from the distribution by adding _DO_NOT_DISTRIBUTE_ after their names. I also removed the old white-papers that might not apply to the current version of the library and documentation about chunking performance since it's wrong now that chunk caching is implemented. Everyone please check the files you're responsible for to make sure that they should really be part of a release. To get a list of all files use grep '^\.' MANIFEST | cut -f1 To get a list of files for distribution use: grep '^\.' MANIFEST | grep -v _DO_NOT_DISTRIBUTE_ (These commands assume tabs in the MANIFEST file. If the file might contain spaces then run it through `unexpand' or `tr' first). ./configure.in ./configure ./test/ragged.c Check for sigaction(). ./test/Makefile.in The `clean' target removes the timing tests.
* [svn-r569] Changes since 19980731Robb Matzke1998-08-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./bin/release Added ./Makefile to the distribution again -- it got lost in the changes last week although it isn't all that important a file since it gets clobbered by configure anyway. ./bin/trace ./doc/html/Filters.html ./doc/html/H5.format.html ./doc/html/H5.user.html ./src/H5.c ./src/H5D.c ./src/H5Dprivate.h ./src/H5E.c ./src/H5Epublic.h ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5O.c ./src/H5Ocomp.c ./src/H5Oprivate.h ./src/H5P.c ./src/H5Ppublic.h ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Spoint.c ./src/H5Sprivate.h ./src/H5Ssimp.c ./src/H5Z.c ./src/H5Zprivate.h ./src/H5Zpublic.h ./src/hdf5.h ./test/dsets.c ./tools/h5ls.c Added the data filter pipeline, a generalization of the compression stuff which allows things like checksums, encryption, compression, performance monitoring, etc. See ./doc/html/Filters.html for details -- it replaces the Compression.html doc. ./src/H5T.c Cleaned up debugging output. ./config/linux Added checks for egcs and pgcc and changed optimization flags for the compilers. ./src/H5G.c ./tools/h5dump.c Fixed compiler warnings in these files and others. ./configure.in ./src/H5private.h ./test/mtime.c Added a check for difftime() and defined HDdifftime() to do something else on systems that don't have difftime().
* [svn-r546] Changes since 19980724Robb Matzke1998-07-291-32/+274
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./doc/html/H5.format.html ./src/H5O.c ./src/H5Oprivate.h ./src/H5Omtime.c [NEW] ./src/H5private.h ./src/Makefile.in Added the modification time message. If an object header has this message then it's value is updated with the current time whenever anything changes in the object header. ./acconfig.h ./configure.in Alas, there seems to be no standard way to convert a string time like 19980727122800 in UTC to a time_t since mktime() only converts local times to time_t. So I've modified the configuration to check for various ways of getting the time zone information: * Added checks for the `tm_gmtoff' field of `struct tm'. * Added a check for the `timezone' global variable. * Added a check for `struct timezone'. * Added a check for BSDgettimeofday(). * Added a check for gettimeofday() although it doesn't actually set the timezone argument on some systems. * Added a check to see if `tm_zone' is a member of `struct tm'. * Added a check to see if `tzname' is a global variable. * Added a check to see if `struct tm' is defined in time.h or sys/time.h. It's not difficult to get the right UTC modification message into the object header, but some systems might have problems getting the right time back out (Irix64 is one) and those systems will report zero for the H5G_stat_t.mtime from an H5Gstat() call as if the mtime message isn't even present. It will, however, continue to be updated as normal. ./src/H5G.c ./src/H5Gpublic.h The H5G_stat_t struct now contains an `mtime' field which will hold the object modification time. If the object has no object modification time then the `mtime' will be initialized to zero. Fixed a bug in H5G_stat() that caused the `objno' field of the H5G_stat_t to be set incorrectly on some machines. ./src/H5D.c Writing to external datasets fail if the hdf5 file is not open for writing. A modification time message is added to the dataset object header when it's created and H5O_touch() is called from H5D_write() to update that message. ./src/H5T.c Fixed a bug in H5Tget_member_dims() that caused a segmentation fault if one of the output array arguments was the null pointer. Relaxed the member dimension checking in H5Tinsert_array() so it can also be used for scalar members. ./test/Makefile.in Added additional file names to the `mostlyclean' target. ./tools/h5dump.c ./tools/h5tools.h Increased the temporary buffer size to 1MB. Added support for printing compound data types with array members. When printing H5T_NATIVE_CHAR and H5T_NATIVE_UCHAR we escape double quote characters. ./tools/h5ls.c Changed the output format a little because we were starting to get too much info to fit on a line. Without `--verbose' each object occupies one line of output. Otherwise, additional information is printed below the object name: object file address, comment, and modification time. If `--dump' is given then the data is printed after the other information. ./test/cmpd_dset.c Changed the way the dataset is initialized to be more uniform.
* [svn-r485] Changes since 19980710Robb Matzke1998-07-131-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./Makefile.in ./config/commence.in ./config/conclude.in ./config/depend.in ./src/Makefile.in ./test/Makefile.in Tests are no longer installed for `make install'. Added a new target `make tests' that builds the tests but doesn't run them. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Added detection of fork() and waitpid(). If present the contants HAVE_FORK and HAVE_WAITPID will be defined in H5config.h. ./test/dtypes.c Minor tweaks for systems that don't have fork() or waitpid(). ./MANIFEST ./tools [NEW] ./tools/Makefile.in [NEW] ./tools/h5debug.c [NEW] ./tools/h5import.c [NEW] ./tools/h5ls.c [NEW] ./tools/h5repart.c [NEW] Added a tools directory and moved tools from the src directory to here.
* [svn-r471] Changes since 19980708Robb Matzke1998-07-081-23/+27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST Alphabetized. `d' comes before `e' :-) ./bin/release Added the `-batch' option which causes the script to not ask questions and to automatically update the minor version number and set the patch level back to `a'. This is intended to be used for the daily snapshots: #! /bin/sh set -e cd ~/hdf5 make distclean make test bin/release -batch tar compress gzip bzip2 mv ./releases/* /repository ./src/H5Z.c Removed warnings about unused variables when the zlib.h header file is present but libz.a isn't. ./INSTALL ./configure.in ./doc/html/tracing.html Made API tracing the default (you still need to define the HDF5_TRACE environment variable to get results) and change the name from `--disable-tracing' to `--disable-trace' to make it consistent with the other switches. Changed `site config file' to `host config file' to match the documentation. ./doc/html/H5.user.html Added a reference to the `tracing.html' file.
* [svn-r443] Changes since 19980630Robb Matzke1998-07-021-2/+2
| | | | | | | | | | ---------------------- ./MANIFEST ./configure.in ./examples/Makefile.in [NEW] Added a Makefile.in for the examples directory. To generate the Makefile run configure again.
* [svn-r429] Changes since 19980616Robb Matzke1998-06-171-112/+127
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/tracing.html NEW This entire update is to make it possible for the library to print the name, arguments, and return value of every API call without requiring any extra work from developers or app programmers. This file describes how this all works. ./configure.in Added the `--enable-tracing' switch. If you use it then the library will include code to print API function names, argument names and values, and function return values. However, you must then turn on the tracing by setting the HDF5_TRACE environment variable to a file descriptor number. The default is `--disable-tracing' since enabling it causes a slight increase in library size and a slowdown resulting from an extra function call for each API function call (I couldn't even measure the slowdown :-) ./bin/trace NEW A perl script that synchronizes the H5TRACE() macro calls in the *.c files with the function return type and formal argument names and types. If you use GNU make and gcc then this will be done automatically, otherwise just invoke this script with the names of one or more .c files. You could do it by hand to, but encoding argument types is a little tricky at first. ./config/commence.in Added the $(TRACE) macro, which defaults to the no-op. Added -D_POSIX_SOURCE to the compiler command line. ./src/Makefile.in Override the default for $(TRACE). ./config/depend.in Automatically calls $(TRACE) to synchronize the H5TRACE() macros in any source file that changed. As with makefile dependencies, one way to force synchronization of all files is to remove the `.depend' file. ./MANIFEST Added new files. ./src/H5Eprivate.h Modified HRETURN_ERROR() and HRETURN() for tracing. ./src/H5.c ./src/H5private.h This is where the real tracing work really happens, in H5_trace(). ./src/H5A.c ./src/H5D.c ./src/H5G.c ./src/H5P.c ./src/H5S.c ./src/H5Z.c Added H5TRACE() calls to all API functions. You don't really need these changes if you don't want to merge your stuff because they can be generated automatically by going to the hdf5/src directory and saying ../bin/trace *.c ./src/H5T.c Added H5TRACE() calls. Other stuff below. ./src/H5E.c ./src/H5Epublic.h Added H5TRACE() calls. Created a type H5E_auto_t for the `func' argument of H5Eset_auto() and H5Eget_auto() to make those arguments easier to parse for tracing. It should also make it clearer for users that don't know how to read complicated ANSI data types. ./src/H5F.c Added H5TRACE() calls. Changed a couple `uintn' argument types in API functions to `unsigned int' since `uintn' part of the API. Changed a few "can't" and "cant" error messages to "unable to". ./src/H5Ipublic.h Removed H5_DIRECTORY from the H5I_group_t enum. It wasn't used anywhere. ./src/H5Tconv.c Removed an unused label. ./src/H5Fistore.c ./src/H5Oattr.c ./src/H5Odtype.c ./src/H5T.c ./test/dsets.c ./test/dtypes.c Fixed a warning about a variable possibly used before it's initialized. Added __unused__ to turn off some unused argument warnings that pop up when debugging is turned off and optimizations are turned on.
* [svn-r428] Changes since 19980612Robb Matzke1998-06-161-38/+77
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5Tbit.c ./MANIFEST ./test/Makefile.in ./test/bittests.c NEW Finished the bit vector operations and added test cases. ./src/H5Tconv.c ./test/dtypes.c Finished integer->integer general conversion and added test cases. Overflows and underflows are handled by substituting the closest possible value. Examples: (unsigned)0xffff -> (unsigned) 0xff ( signed)0xffff -> (unsigned)0x0000 (unsigned)0xffff -> ( signed)0x7fff ( signed)0x7fff -> ( signed) 0x7f ( signed)0xbfff -> ( signed) 0xbf ( signed)0x8000 -> ( signed) 0x80 ./src/H5private.h Added definitions for MIN and MAX that take 3 or 4 arguments: MIN3(), MIN4(), MAX3(), MAX4(). Also added MIN2() and MAX2() as aliases for MIN() and MAX(). ./test/tattr.c Removed some redundant `&' operators. ./configure.in ./src/H5config.h.in [regenerated] ./src/H5.c Fixed warnings on DEC where long double is the same as double.
* [svn-r425] Changes since 19980610Robb Matzke1998-06-121-91/+135
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- THIS CHECKIN IS FOR QUINCEY -- NOT EVERYTHING WORKS (but it compiles) MOST OF THE CHANGES ARE FOR BETTER TYPE CONVERSION IN THE NEXT ALPHA ./MANIFEST ./src/H5Tbit.c NEW ./src/Makefile.in Bit vector operations (not done yet) ./configure.in Added -lm to the library list, needed by bit-vector operations and conversion functions. Removed vestiges of PARALLEL_SRC no longer used by the makefiles. Albert came up with a better way (that actually works :-) ./src/H5D.c No code changes. Split a couple of long lines, refilled a couple multi-line comments. ./src/H5T.c ./src/H5Tpublic.h Fixed a bug reported by Jim Reus regarding conversion of compound data types whose members require conversions which are satisfied by as-yet unregistered soft conversion functions. Added H5T_IEEE architecture, but the funny-looking integer types will be changed to H5T_BE_ and H5T_LE_ architectures with the type names changed to match the H5T_NATIVE_ integers. Added an H5Tconvert() but it hasn't been documented or tested yet. ./src/H5Tconv.c ./src/H5Tpkg.h Registered conversion functions integer->integer (a general case) and integer->float (for a specific case). The integer->integer conversion depends on the bitvector operations which aren't finished yet and the int->float conversion hasn't been retested since it was borrowed from AIO. Don't look at them yet, they're ugly :-) ./src/H5detect.c Fixed a typo which caused the msb_pad field of an atomic type to not be initialized. ./test/dtypes.c Added a test for number conversions but it's commented out until the conversion stuff is truly working.
* [svn-r376] ./acconfig.hRobb Matzke1998-04-241-8/+49
| | | | | | | | | | | | | | | | | | | | | | | ./configure.in ./config/BlankForm ./src/H5.c Configure tries to figure out how to print `long long' types and then defines PRINTF_LL_WIDTH to be `ll' or `q' or something. It does this by running little sprintf() programs with various formats until it gets one that works. If this causes problems when cross compiling (like with parallel machines) then you may add the following to the appropriate config file: hdf5_cv_printf_ll=${hdf5_cv_printf_ll='ll'} or hdf5_cv_printf_ll=${hdf5_cv_printf_ll='q'} or hdf5_cv_printf_ll=${hdf5_cv_printf_ll='l'} ./config/intel-osf1 ./config/irix5.3 Updated these config files to match the others. This allows the `--enable-production' configure flag to work properly.
* [svn-r353] Changes since 19980414Robb Matzke1998-04-171-84/+130
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/Compression.html [NEW] ./html/Datasets.html ./html/H5.format.html ./html/H5.user.html Documented compression. A couple of the H5P functions aren't quite implemented yet but they're coming soon... ./src/H5Dprivate.h ./src/H5E.c ./src/H5Epublic.h ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5MF.c ./src/H5MFprivate.h ./src/H5O.c ./src/H5Ocomp.c [NEW] ./src/H5Oprivate.h ./src/H5P.c ./src/H5Ppublic.h ./src/H5Sprivate.h ./src/H5Ssimp.c ./src/H5Z.c [NEW] ./src/H5Zprivate.h [NEW] ./src/H5Zpublic.h [NEW] ./src/Makefile.in ./src/hdf5.h ./test/dsets.c ./test/istore.c Compression is now mostly working. Don't try to open a compressed dataset though because the compression message won't be read. ./html/Datatypes.html ./html/H5.api.html ./src/H5.c ./src/H5private.h ./src/H5D.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5Tpublic.h Added timing support. When compiled with H5T_DEBUG defined the library will print conversion bandwidths when the library closes. The H5Tregister functions take a string as the first argument so the statistics output is meaningful. ./MANIFEST Added new files. ./configure.in ./src/H5config.h.in Check for getrusage(). Check for compress2() in libz.a and the zlib.h header file. Added `z' to the debug list. ./src/H5B.c ./src/H5Bprivate.h ./src/H5Gnode.c ./src/debug.c Cleaned up some indentation and added support to print istore B-trees. From the debugger, give the B-tree address and the dimensionality from the layout message of the object header. ./src/h5ls.c The oid is printed as w:x:y:z where w and x are the file ID and y and z are the OID within the file. You can give z or y*2^32+z as an argument to the debugger to print the object header for the object. ./src/H5AC.c Cleaned up statistics and made them match those reported by H5T and H5Z. ./src/H5MM.c ./src/H5MMprivate.h ./src/H5Fistore.c Finally got rid of a couple of long-standing const cast warnings.
* [svn-r350] RUNTEST was hardcoded to "mpirun -np 1" due to some historical SGIAlbert Cheng1998-04-161-8/+8
| | | | | implementation. Changed it to take a user supplied value during configuration call.
* [svn-r339] Changes since 19980408Robb Matzke1998-04-091-224/+248
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5Osdspace.c ./html/H5.format.html In the past we were allowed to have >2GB files on a 32-bit machine as long as no dataset within the file was larger than 4GB (or whatever sizeof(size_t) is). That's been fixed now. All dataset size calculations are done with `hsize_t' which is normally defined as `unsigned long long'. ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fprivate.h ./src/H5P.c ./src/H5Ppublic.h The file family member size can now be set/queried. The default is still 64MB, but it can be set to 1GB by saying: H5Pset_family (plist, 30, H5P_DEFAULT); When opening an existing file family the specified bits-per-member is ignored and the first member of the family determines the bits-per-member, which can be retrieved with H5Pget_family(). ./acconfig.h ./configure.in ./src/H5config.h ./src/H5public.h Added `--disable-hsizet' so that those with old GCC compilers (<2.8.1) can still compile the code. ./src/H5.c ./src/H5private.h Added HDfprintf() which works just like fprintf() except you can give `H' as a size modifier for the integer conversions and supply an `hsize_t' or `hssize_t' argument without casting it. For instance: hsize_t npoints = H5Sget_npoints(space); HDfprintf(stdout,"Dataset has %Hd (%#018Hx) points\n", npoints, npoints); You can now give `%a' as a format to print an address, but all formating flags are ignored and it causes the return value of HDfprintf() to not include the characters in the address (but who uses the return value anyway :-). Example: H5G_t *grp; HDfprintf(stdout, "Group object header at %a\n", &(grp->ent.header)); Added HDstrtoll() which works exactly like [HD]strtol() except the result is an int64. ./src/debug.c Large addresses can now be entered from the command-line. Use either decimal, octal (leading `0') or hexadecimal (leading `0x') when giving the address. ./src/h5ls.c The printf format for dataset dimensions was changed to `%Hu' to support large datasets. ./test/big.c [NEW] A test for big datasets on 32-bit machines. This test is not run by default. Don't try to run it on an nfs-mounted file system or other file system that doesn't support holes because it creates two 32GB datasets of all zero.
* [svn-r338] Changes since 19980407Robb Matzke1998-04-081-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5B.c ./src/H5D.c ./src/H5Dprivate.h ./src/H5Dpublic.h ./src/H5F.c ./src/H5Farray.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fpublic.h ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5HL.c ./src/H5MF.c ./src/H5MFprivate.h ./src/H5O.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Olayout.c ./src/H5Oname.c ./src/H5Oprivate.h ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5P.c ./src/H5Ppublic.h ./src/H5S.c ./src/H5Sprivate.h ./src/H5Spublic.h ./src/H5Ssimp.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5V.c ./src/H5Vprivate.h ./src/H5private.h ./src/H5public.h ./src/h5ls.c ./test/cmpd_dset.c ./test/dsets.c ./test/extend.c ./test/external.c ./test/hyperslab.c ./test/iopipe.c ./test/istore.c ./test/shtype.c ./test/tfile.c ./test/th5s.c Anything having to do with the size of a dataset now uses the types `hsize_t' and `hssize_t' which must be the same size and at least as large as `size_t'. This isn't fully tested yet, so hsize_t and hssize_t are defined as size_t and ssize_t in H5public.h. Setting them to larger values will trip up gcc versions less than 2.8.1 on x86 platforms. Documented unused function formals with `__unused__' before the formal name. This also has the effect of supressing warning messages for gcc since it's defined to be `__attribute__((unused))' in the H5private.h file. ./src/debug.c ./src/h5ls.c If the file name contains a `%' then the file is opened as a file family with H5P_DEFAULT for the file member access property list. ./src/h5ls.c The group name is optional, defaulting to `/'. ./src/hdf5.h Added some missing public header files.
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