summaryrefslogtreecommitdiffstats
path: root/doc
Commit message (Collapse)AuthorAgeFilesLines
* Fix broken links caused by examples relocation. (#3995)H. Joe Lee2024-02-081-2/+2
|
* Update release schedule (#3992)Dana Robinson2024-02-062-15/+12
| | | | * Add 2024, remove 2022 * Update README.md
* Change dest for doxygen (#3856)Allen Byrne2023-11-151-1/+1
| | | * Switch doxygen refs to hdf5/develop
* Add GitHub actions for testing VOL connectors (#3849)jhendersonHDF2023-11-151-7/+19
| | | | | | | | | | | | | | | | * Fix issue with HDF5_VOL_ALLOW_EXTERNAL CMake variable * Add initial API test workflow * Initialize parallel testing with MPI_THREAD_MULTIPLE when testing API * Add CMake variable to allow specifying a VOL connector's package name * Remove call to MPI_Init in serial API tests While previously necessary, it now interferes with VOL connectors that may need to be initialized with MPI_THREAD_MULTIPLE
* Update parallel compression feature to support multi-dataset I/O (#3591)jhendersonHDF2023-10-101-15/+36
|
* Fix several spelling/grammar issues (#3621)jhendersonHDF2023-10-031-2/+2
|
* Support CMake VOL builds with FetchContent from local directory (#3455)mattjala2023-09-011-23/+46
| | | | | | | | | | | | | * Update VOL CMake for REST VOL * Prevent linking static libs to VOLs * index on fetch_local: 5c5c3f1505 Prevent linking static libs to VOLs * index on (no branch): 9a36d3e7b1 On fetch_local: WIP:add source dir fetch option for vols * Allow building of VOL from local source * Move LOCAL_DIR option to HDF5_VOL_ALLOW_EXTERNAL
* Add 1.14.4 to the release schedule (#3434)Dana Robinson2023-08-262-1/+3
|
* Fixes the last of the -Wextra-semi-stmt warnings (#3326)Sean McBride2023-08-021-1/+1
| | | | | | | | | | | | | | | | | | | | | | | * Fixed extra semi warning by adjusting alternative macro definitions * Find-replace H5E_END_TRY; -> H5E_END_TRY * Made H5Epush_goto a do-while loop, fixed indentation * Made GOTOERROR and ERRMSG do-while loops * Made Hgoto_error and Hgoto_done do-while loops * Made vrfy_cint_type and vrfy_ctype do-while loops * Made TEST_TYPE_CONTIG and others do-while loops * Removed extraneous semi-colons * Committing clang-format changes --------- Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* A couple of documentation items to fix (#3332)Allen Byrne2023-08-021-4/+4
|
* Update release schedule (#3317)Dana Robinson2023-08-012-2/+4
| | | | * Move 1.12.3 to November * Add 1.14.3 in October
* Move 1.12.3 release to October (#3263)Dana Robinson2023-07-202-2/+2
|
* Update the release schedule for 1.12.3 (#3066)Dana Robinson2023-06-072-2/+2
|
* API test updates (#3018)jhendersonHDF2023-05-261-0/+195
| | | | | | | | | | | | | | | | | | | | | | | | | * Remove macros from api tests (#2929) * Remove macros and undefined callbacks (#2959) * Remove remaining macros from H5_api_tests_disabled.h (#2968) * Put some vol capability checks in testpar tests and remove remaining warnings (#2995) * API tests datatype generation cleanup * Clean up API tests' random datatype generation and fix bug with enum datatype generation * Init parallel API tests with MPI_THREAD_MULTIPLE * HDF5 API tests - Check VOL connector registration * Determine whether a VOL connector failed to load before running API tests * Cleanup some usages of H5VL_CAP_FLAG_CREATION_ORDER in API tests * Remove some now-unused macros from H5_api_tests_disabled.h * Enable HDF5 API tests by default * Implement CMake option to install HDF5 API tests * Check for invalid AAPL from H5Acreate * Enable building of VOL connectors alongside HDF5 in CMake * Prepend CMake VOL URL option indices with 0s so they come in order * Don't turn on API tests by default yet * Document VOL connector FetchContent functionality * Add release note for API test updates * Only install testing library if API tests are installed * Fix grammar
* Move the 1.10.11 release to September (#2898)Dana Robinson2023-05-052-2/+2
|
* Change Powershell to PowerShell in docs (#2794)H. Joe Lee2023-04-231-1/+1
|
* Revert "Added tables of CVE issues (#2685)" (#2696)Dana Robinson2023-04-122-174/+0
| | | This reverts commit b749a4ef09a6fa2bdb02cf49eddda364dcb9a0cc.
* Added tables of CVE issues (#2685)bmribler2023-04-122-0/+174
|
* Update release schedule (#2692)Dana Robinson2023-04-112-5/+9
|
* Updates README.md (#2387)Dana Robinson2023-01-042-21/+12
| | | | | | | | | | | | | | | | | | | * Updates release schedule for 2023 * Fixes broken build badge * Another build badge tweak * Even more badge tweaking * More branch tweaking * More badge tweaking * More badge tweaks * Even more badge tweaking * Adds badges for other branches
* Moved the contributing.md document to the project root (#2244)Dana Robinson2022-11-091-85/+0
|
* Adds a first cut at a "getting started with HDF5 development" guide (#2137)Dana Robinson2022-10-011-0/+866
| | | | | | | | | | | | | | | | | * Added empty "getting started" markdown file * Added title and brief tour of source code * Moved platform-independence text to markdown * Added anatomy of a function documentation * Adds information on public/private/package calls and macros * Adds much getting started guide text * Fixed typos * Fixed codespell issues
* Adds file locking documentation (#2084)Dana Robinson2022-09-141-0/+366
| | | | | | | | | | | | | | | * Added initial (partial) file locking document * Almost done with file locking document * Fix intro * Cleaned up text * Updated environment variable verion info * Fix typo * Fix typos
* Updates release schedule for 2023 (#2085)Dana Robinson2022-09-042-21/+19
| | | | | * Updates release schedule for 2023 * Updates figure to put 1.13 and 1.14 on the same line
* Add documentation for parallel compression feature (#1981)jhendersonHDF2022-08-091-0/+313
|
* Updates the release schedule (#1923)Dana Robinson2022-07-222-1/+1
| | | | 1.13.2 moved to August Subfiling moved to 1.13.2 from 1.13.3
* Updates branches-explained.md (#1900)Dana Robinson2022-07-151-16/+15
|
* Updates the release schedule (#1796)Dana Robinson2022-06-062-6/+6
|
* Adds release timeline to README.md (#1584)Dana Robinson2022-04-052-0/+45
|
* Simplify function enter macros for performance benefits (#1024)David Young2021-11-081-0/+56
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Take a stab at using constructors to initialize instead of function-entry macros. This is a work in progress. It's good enough to run `many_dsets`. * Committing clang-format changes * Add the `many_dsets` benchmark and some scripts I used on jelly for setting up the build/test environment and for recording/flame-graphing profiles. * Committing clang-format changes * Change my Makefile and environment script to work both on jelly and on mayll (and probably on Summit). * Disable clang-format "fix." * Replace the `if (!H5_TERM_GLOBAL)` test in each FUNC_ENTER_ macro with `if (true)`. * Fix bad grammar in a comment. * Instead of labeling the H5*__init_package routines constructors, fold each into an initialization routine, H5*_init(), and call each of the H5*_init() routines. Call most of the H5*_init() routines from H5_init_library() in an explicit order that I found out earlier by instrumenting each __init_package routine and running the library tests. Roll H5FD*__init_package routines into H5FD*_init() routines. This change ends just-in-time initialization of package dependencies by package initializers. Don't track in per-package variables (H5_PKG_INIT_VAR) whether each package has been initialized. Instead, track in a single library variable whether the whole library is initialized or not. Drive the initialization of packages by H5_init_library() with a table of initializer routines. Also drive the termination of packages by H5_term_library() with a table. Perform initialization as needed from FUNC_ENTER_API_INIT(err). This basically restores the old behavior of that macro. Delete a bunch of #definitions in H5private.h that have fallen out of use with these changes. * Committing clang-format changes * Undo the bad auto-formatting that appears to have occurred in spite of my disabling it. Bracket some code in /* clang-format off */ /* clang-format on */ to prevent a recurrence. * Remove a diagnostic abort(). * Fix a logic error: print a comma between every package terminator run, and don't print an initial comma. * Complete the changes I started in H5_term_library() that undo the bad auto-formatting. Stop tracking whether package "tops" were initialized in per-package variables H5*_top_package_initialize_s. H5_term_library() takes care of that for them. Remove H5R_top_term_package() and H5R_term_package(), they don't do anything. * Committing clang-format changes * NFCI. Simplify macro text: replace `if (true) {` with `{`. * Fix formatting and suppress clang-format on a longer range. * Quiet some unused label, unused variable complaints that cropped up after I simplified the FUNC_ENTER_ macros for the sake of performance. * Committing clang-format changes * Delete some programs and scripts that don't belong in the pull request. * Use the right function-entry macro. * Use a sensible format and disable auto-formatting. * Stop calling do-nothing initializer H5FS_init(). Delete it. * Document what changes to make if the default VFD changes. * While I am here, change an `await_prior` flag on the terminator table to `true` to match the previous, non-table-driven code that was here. Found the oversight making the following changes: NFCI: insert an empty line and copy over slightly-edited comments from the previous version, where those comments still correctly explained how library termination operated. * NFCI: lower a staircase. * Replace every occurrence of FUNC_ENTER_NOAPI_INIT(...) with H5_PUSH_FUNC since that is all that that macro does any more. Quiet a bunch of new warnings by changing FUNC_ENTER_NOAPI(...) to FUNC_ENTER_NOAPI_NOERR and removing disused `done:` labels. * NFCI: add curly braces around a multiline statement. * Quiet a signed/unsigned comparison warning. * Add some documentation about library initialization and shutdown. * Make sure that the library is initialized, or else that initialization is already underway, before performing any VFD's initialization. * Committing clang-format changes * Committing clang-format changes * Reduce differences from `develop` branch. * Always initialize `tot_init`. * Committing clang-format changes * Fix typo: H5SL_init initializes skip lists, not VOL. * Remove H5_TERM_GLOBAL test in H5T_init. H5T_init was unusual in that it tested H5_TERM_GLOBAL and exited early if it was set. No other module initializers did that, and I cannot find any reason that should be necessary. Tests still pass when I remove it, so away it goes. * Use HD prefix. * Add function header comments. * Drop the intermediate variable, it's only used once. * Extract subroutine `H5FDperform_init(hid_t (*init)(void))` that initializes the library, if necessary, before calling its VFD-initializer argument. Use H5FDperform_init in the definition of the symbols H5FD_<vfd> (e.g., H5FD_SEC2), which may be evaluated before the library is initialized, like so: ``` ``` I implement H5FDperform_init in its own source file, H5FDperform.c, and exclude that file from trace processing because the `bin/trace` cannot deal with the function-pointer type. * Straggler from last: add new source file src/H5FDperform.c. * Committing clang-format changes * Add a missing file to the MANIFEST. * Switch to FUNC_ENTER_API_NOINIT in H5FDperform_init() and hbool_t in H5_term_library(). Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* A batch of life-cycle examples for different modules (#654)Gerd Heber2021-09-011-18/+17
| | | | | | | | | * Create a tag file for permalinks. * Added DOXYGEN_TAG_FILE. * Added Doxygen life-cycle examples for different modules. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* small edits (#481)Scot Breitenfeld2021-03-221-20/+19
| | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Added description of the current HDF5 branches; added a draft of ↵epourmal2021-03-192-0/+128
| | | | | | | | | | | | | | | | | | | | | | | | | | | | contribution policy. (#445) * Added description of the current HDF5 branches. * Removed capitalization in from Develop, Release, Feature to reflect the real naming schema * Added a draft of contributions guidance document. * Fixed typos. * Fixed section title. * Fixed typo. * Fixed typos and formatting. * Fixed many typos and simplified the text (e.g., removed testing instructions and left pointers to where to find them, etc.) * Fixed a typo. Please enter the commit message for your changes. Lines starting * Added contributing.md file and rearranged doc entries in alphabetical order. * ddressed Gerd's review comments; found and fixed more typos. * Addressed comments from Larry and Scot.
* Start to document the function/parameter/variable attribute macros.David Young2020-02-181-0/+57
|
* [svn-r11084] Frank Baker2005-07-19402-114737/+0
| | | | | | | | | Description: All HDF5 user documentation has been moved to a separate hdf5doc/ repository, managed under Subversion. With this 'cvs commit', all files are stripped from hdf5/doc/. THIS CHANGE IS APPLIED ONLY TO THE HDF5 DEVELOPMENT BRANCH, post Release 1.6.x; it is not applied to the release branches.
* [svn-r11081] Snapshot version 1.7 release 48HDF Admin2005-07-181-16/+81
|
* [svn-r11008] Purpose:James Laird2005-06-3014-0/+56
| | | | | | | | | | | | | | | | | | | | | | Feature: tests now use parallel make and only run once Description: When make is invoked in parallel (using the -j option), several tests will now be run simultaneously. This should speed up testing on a number of systems. When a test passes, it creates a foo.chkexe or foo.chksh file, which prevents the test from running again unless the test or library changes. Solution: Most of the changes live in config/conclude.am. Added *.chkexe and *.chksh files to the list of files to be cleaned at "make mostlyclean" time. Parallel tests still run one at a time, but use the same make instructions as serial tests. Platforms tested: mir, eirene, sleipnir, pommier, copper, modi4 (some errors occurred, probably due to the test being run before updating hdf5. Will re-run tests after checkin.)
* [svn-r10976] Frank Baker2005-06-231-128/+701
| | | | | | | | | Purpose: Added new meta data cache functions. Added links to HDF5 High-Level API reference pages to nav bar. Other minor (though somewhat pervasive) reformatting. Platforms tested: Firefox
* [svn-r10975] Frank Baker2005-06-231-2/+67
| | | | | | | Purpose: Added links to HDF5 High-Level API reference pages to nav bar. Platforms tested: Firefox
* [svn-r10974] Frank Baker2005-06-231-48/+186
| | | | | | | | | | | | | | Purpose: Added new section for High-level HDF5 APIS. Added links to HDF5 High-Level API reference pages to nav bar. Added quick-links bar for High-level APIs Main HDF5 Library, including Low-level APIs Fortran and C++ Interfaces Added "Main HDF5 Library, including Low-level APIs" heading. There had previously been no comparable heading. Platforms tested: Firefox
* [svn-r10973] Frank Baker2005-06-2312-3/+117
| | | | | | | Purpose: Added links to HDF5 High-Level API reference pages. Platforms tested: Firefox
* [svn-r10971] Purpose: Bug fixRaymond Lu2005-06-222-7/+22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: See details from Bug #213. Family member file size wasn't saved anywhere in file. When family file is opened, the first member size determine the member size. Solution: Hopefully, this is the last step of checkin for this stage. This step mainly enables h5repart tool to be able to convert file driver from family to sec2. Because the library saves family information in file, in trying to convert to sec2 driver, the library simply change the address of driver information to undefined so that the driver information block can be ignored. This step also updates the reference manual of H5Pset_fapl_family() and h5repart. In the fifth step of checkin, backward compatibility with v1.6 is tested. A family file created was created with the v1.6 library and opened with this version of the library. In the fourth step of checkin, a test suit is added for h5repart, including a program to generate the test files, a script file to run h5repart, and a program to verify repartitioned files can be opened by the library. There's a change from the first step of checkin. Family name template is no longer saved in the superblock because different pathname can make the name different. In the third step of checkin, h5repart has been modified. If h5repart is used to change the size of family member file, the new size(actual member size) is saved in the superblock. In the second step of checkin, multi driver is checked against the driver name saved in superblock. Wrong driver will result in a failure with an error message indicating multi driver should be used. This change includes split driver because it's a special case for multi driver. In the first step of checkin. Family member size and name template(unused at this stage) are saved in file superblock. When file is reopened,the size passed in thrin superblock. A different size will trigger a failure with an error message indicating the right size. Wrong driver to open family file will cause a failure, too. Platforms tested: h5committest and fuss. Misc. update: doc/html/RM_H5P.html and doc/html/Tools.html
* [svn-r10878] Frank Baker2005-06-081-4/+3
| | | | | | | | | | Purpose: Remove statement that gray-scale image attribute must be in the range of 0-255. Remove datatype definition for the attribute IMAGE_ASPECTRATIO. Fixes Bugzilla entry 347. Platforms tested: Firefox
* [svn-r10840] Purpose:James Laird2005-06-0214-14/+14
| | | | | | | | | | | Added check-s and check-p targets. Description: Added check-s and check-p targets to 1.7 branch to match changes to 1.6 branch. Now parallel and serial tests can be run separately. Platforms tested: mir, modi4, copper
* [svn-r10798] Purpose:James Laird2005-05-253-1/+229
| | | | | | | | | | | | Added documentation Description: Added "Automake Use Cases" document to Tech Notes. This is intended as a reference or an introductory document; more in-depth documentation is in progress. Platforms tested: Change only to documentation. Documentation is viewable on Windows.
* [svn-r10784] Frank Baker2005-05-231-47/+577
| | | | | | | | | | | | Purpose: Complete H5Error API changes -- Changed and deprecated functions. Description: Added H5Eclear_stack, H5Eprint_stack, H5Epush_stack, H5Eget_auto_stack, H5Eset_auto_stack, H5Ewalk_stack. Added "deprecated function" notes to H5Eclear, H5Eprint, H5Epush, H5Eget_auto, H5Eset_auto, H5Ewalk, H5Eget_major, H5Eget_minor. Platforms tested: Firefox
* [svn-r10760] Purpose: Minor ModificationRaymond Lu2005-05-191-1/+1
| | | | | | | | Description: changed return type of H5Eget_num from SIZE_T to SSIZE_T to include negative return value for failure. Platforms tested: Not needed
* [svn-r10752] Purpose:Frank Baker2005-05-181-29/+454
| | | | | | | | | | | | | | | | Added new H5Error APIs. Description: Added C entries for H5Eregister_class H5Eunregister_class H5Eget_class_name H5auto_is_stack H5Ecreate_msg H5Eget_msg H5Eclose_msg H5Eget_num H5Epop H5Eget_current_stack H5Eclose_stack Still missing -- 6 APIs that match existing APIs except that they include a 'stack' parameter. Those APIs will be added shortly. Platforms tested: Firefox
* [svn-r10751] Purpose:Frank Baker2005-05-171-52/+93
| | | | | | | | | Minor reformatting adn edits. Added links to C++ RM and Parallel HDF5 sites. Restructured document lists with the intent of easing discovery. Description: Platforms tested: Firefox
* [svn-r10744] Snapshot version 1.7 release 47HDF Admin2005-05-151-7/+14
|