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* Disable warnings as errors (#3562) (#3566)Larry Knox2023-09-211-1/+1
| | | Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
* Sync CMake and doxygen changes with develop (#3543)Allen Byrne2023-09-1923-9/+1859
| | | | | * Sync CMake and doxygen changes from develop * Add missing images
* Various merges from develop (#3135)Allen Byrne2023-06-195-8/+3
| | | | | | | | | * Merges from develop/1.14 * Fix doxygen warnings * Fix spelling * Fix doxygen ref * Add braces * Fix format * Remove unused file
* Remove most unused options which are defaulted #2998 (#3047)Allen Byrne2023-06-0512-913/+17
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* Merge CMake cleanup process from develop (#2622)Allen Byrne2023-03-232-2/+2
| | | | | * Merge CMake cleanup process from develop * Update test script files
* Gather latest CMake changes from develop (#2609)Allen Byrne2023-03-203-6/+6
| | | | Add HDF5_SRC_INCLUDE_DIRS variable cleanup cmake comments and documentation
* Fix H5Dchunk_iter doxygen example (#2520)Mark Kittisopikul2023-03-101-3/+3
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* Fix 1.10 new codespell issues (#2521) (#2525)Larry Knox2023-03-093-3/+3
| | | | | | | | | | | | | * Fix new codespell issues (#2521) * Fix new codespell issues * Have codespell ignore ./config/sanitizer/sanitizers.cmake * Fix typo in genparser --------- Co-authored-by: Mark Kittisopikul <mkitti@users.noreply.github.com>
* 1.10 Merge doxygen plist tables changes #2470 from develop (#2506)Allen Byrne2023-03-0123-12696/+14832
| | | | | | | | | * Add new/moved files * Doxy corrections * Aother Doxy correction * Remove type not in 1.10
* 1.10 Merge HDFGroup#2175 Implement option for using CMake GNUInstallDirs (#2222)Allen Byrne2022-11-051-1/+1
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* 1.10 Port "learn HDF5" tutorial to doxygen (#2093)Allen Byrne2022-09-0926-92/+6205
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* Main Getting Started page and the three HDF Resources have pages. (#2092)Allen Byrne2022-09-0947-26/+1256
| | | | | | | | HDFView is still under construction, but mostly there. Merge the Fortran doxygen changes from develop PR, updated RM index. Adjusted references to UG and created some TODOs for missing UG modules Some may just need a reference back to a section of the user guide. Made some Fortran doxygen changes for overall consistency.
* Update java code with doxygen tags, add menu files. (#1972)Allen Byrne2022-08-0911-420/+527
| | | | | | | | | | | | | | | | | * Update java code with doxygen tags, add menu files. * Add -Xdoclint:none to autotools javadoc command * Committing clang-format changes * Add fortran RM list descriptions * delete empty file * doc tag location changes * Spelling corrections Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1.10 clang 13 format #1933 (#1940)Allen Byrne2022-07-294-6/+6
| | | | | * clang 13 format #1933 * Correct workflow
* Merge changes between branches (#1930)Allen Byrne2022-07-265-14/+17
| | | | | * Merge changes between branches * More merge synchs
* Port UG chapter 1 and some cleanup (#1924)Allen Byrne2022-07-2222-0/+0
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* Port UG chapter 2 and fix LD bad ref warning (#1921)Allen Byrne2022-07-218-0/+0
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* Add doxygen chapter for files, fix autotools images (#1908)Allen Byrne2022-07-196-1/+2
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* Add doxygen for high level modules to hdf51.10 (#1899)vchoi-hdfgroup2022-07-167-8/+1131
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* Port UG groups chapter to doxygen (#1850)Allen Byrne2022-07-0618-0/+0
| | | | | | | * Port UG groups chapter to doxygen. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Add datasets UG chapter, plus fix doxygen refs (#1841)Allen Byrne2022-07-0518-7/+7
| | | | | * Add datasets UG chapter, plus fix doxygen refs * Remove duplicates
* Port of datatypes UG. (#1829)Allen Byrne2022-06-2945-173/+5
| | | | | * Port of datatypes UG. * Formatting fix
* Add H5S UG chapter, adjust details (#1775)Allen Byrne2022-05-1719-1/+1
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* Add H5P doxygen chapter (#1762)Allen Byrne2022-05-148-58/+346
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* INITIAL attempt at User Guide in doxygen (#1678)Allen Byrne2022-05-137-7/+149
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD * INITIAL attempt at User Guide in doxygen * Add quick H5E to show actual UG header sections * Add Error Handling chapter * Cleanup format changes * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1.10 Merge doxygen changes from develop (#1543)Allen Byrne2022-03-3025-270/+3068
| | | | | | | * Merge doxygen changes from develop * Remove 1.12 section * Minor comment cleanup
* Fixed minor issues. (#1257)Gerd Heber2021-12-046-8/+3
| | | | | | | | | * Fixed minor issues. * Whoops. Forgot to commit these. * CMake update. * One more time.
* Merge Fix various warnings and issues in doxygen doc generation #994 (#997)Allen Byrne2021-09-104-12/+51
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* 1.10 Merge A batch of life-cycle examples for different modules #654 (#988)Allen Byrne2021-09-0747-642/+2933
| | | | | * Merge A batch of life-cycle examples for different modules #654 * Change doxygen generated file location
* Hdf5 1 10 doxygen merges (#684)Allen Byrne2021-05-2667-56/+53961
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 10 Merge of long double fix and compiler flags (#531)Allen Byrne2021-04-191-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 10 Whitespace changes after clang-format run (#287)Allen Byrne2021-01-293-23/+26
| | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes
* Add doxygen framework for CMake and autotools (#90)Allen Byrne2020-11-209-0/+3771
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