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* Update Copyright headers. (#2534)Larry Knox2023-03-131-1/+0
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* Hdf5 1 12 parallel compression merge (#1529)jhendersonHDF2022-03-281-2/+4
| | | | | | | | | | | | | | | | * Fix the function cast error in H5Dchunk.c and activate (#1170) `-Werror=cast-function-type`. Again. * Parallel Compression improvements (#1302) * Fix for parallel compression examples on Windows (#1459) * Parallel compression adjustments for HDF5 1.12 * Committing clang-format changes Co-authored-by: David Young <dyoung@hdfgroup.org> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Update URL in source file Copyright headers for web copy of COPYINGLarry Knox2021-02-201-1/+1
| | | | file - files not in src or test.
* Sync with developDana Robinson2020-08-011-16/+16
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* Whitespace cleanupAllen Byrne2020-05-121-1/+1
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* Let us override the examples directory using --with-examplesdir=DIR.David Young2019-12-191-2/+2
| | | | | | | | | This is handy for NetBSD where HDF5 examples are installed by convention in $prefix/share/examples/hdf5/ rather than in ${prefix}/share/hdf5_examples/, which is the HDF5 default. Place hdf5_examples/ under ${datarootdir} which on most systems will be ${prefix}/share/, anyway.
* Revert "Merge branch 'hdf5_1_12' of ↵Jerome Soumagne2019-12-091-2/+2
| | | | | | | https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_12" This reverts commit 9f9336a5bd541752f472bab4c93da8de89f862cd, reversing changes made to 437a1919e7ba60fe75a33a466d264183a0255319.
* Merged HDFFV-10929_2GB_testing to hdf5_1_12Richard Warren2019-12-061-2/+2
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* Add new H5R API that abstracts object, region and attribute reference typesJerome Soumagne2019-10-081-6/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Also support references to external files Add new H5T_REF type and type conversion routines Support conversion from H5T_REF_OBJ/DSET_REG to H5T_REF Add H5Treclaim() API to reclaim memory of vlen/reference types Deprecate H5Dvlen_reclaim() Fix H5T_vlen_reclaim() and H5T_reclaim() to use private callback Add H5T_ref_reclaim() Move previous H5R APIs to H5Rdeprec.c Clean up H5Ocopy Separate H5O_copy_expand_ref() to H5Ocopy_ref() Add support for copying new reference types Clean up deprecated routines to go through VOL and same code path Fix return codes in existing trefer.c test Rename trefer.c to trefer_deprec.c trefer.c is for new references Add performance test for trefer Add additional obj_copy_ref test Make use of tokens and blobs to store references Skip blob encoding for object references Start adding new reference examples
* Remove example VOL connector, since it's been superceded by the pass-throughQuincey Koziol2018-11-281-5/+2
| | | | VOL connector in the src subdirectory.
* VOL FEATUREDana Robinson2018-10-101-13/+16
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* [svn-r27025] Enabled compilation and run for the new vds examples for "make ↵Elena Pourmal2015-05-051-2/+6
| | | | installcheck"; added to MANIFET.
* [svn-r26564] Modified related files after adding example/h5_vds-percival.cElena Pourmal2015-03-241-2/+3
| | | | Tested on jam.
* [svn-r26420] Added new example for simple I/O. Modified other examples ↵Elena Pourmal2015-03-101-2/+3
| | | | according to the suggestion in H5VDS-7 (see VDS-178)
* [svn-r26376] Added new examples for fixed-size Excalibur and for Eiger use ↵Elena Pourmal2015-03-051-2/+6
| | | | | | cases. Fixed several typos. Tested on jam.
* [svn-r26359] Added h5_vds-exc.c to misc. files and ran bin/reconfigure.Elena Pourmal2015-03-041-2/+3
| | | | Tested on jam.
* [svn-r26268] Added VDS example.Elena Pourmal2015-02-221-2/+3
| | | | | | | I ran bin/reconfigure on jam and it modified test/Makefile.in. May be Neil fixed Makefile.am, but didn't run reconfigure? Tested on jam.
* [svn-r24997] Added compiler versions for mpich to settings file and ↵Larry Knox2014-04-091-4/+6
| | | | | | | | | | | | | configure summary. For make installcheck, compile and run installed examples using the installed scripts. They were being compiled but not run. Add Fortran2003 examples to the run-ex-fortran script when fortran2003 is enabled. Set flag to -O3 in production mode for Intel compilers other than those with specified other settings. Gentoo patches: Remove unnecessary setting of LD_LIBRARY_PATH from configure. Prevent potential array subscript out of bounds error in perform/pio_engine.c and sio_engine.c. Tested with h5committest on jam, koala, ostrich and platypus, on emu and kite, and parallel tests on jam, koala and platypus with mpich built with gnu 4.8.2 and with intel compilers.
* [svn-r23091] Changed C examples to reflect changes in documentation via Barbara;Scot Breitenfeld2012-12-121-2/+20
| | | | | | mainly program additions from tutorial. Tested: jam (gnu compilers)
* [svn-r22714] one more missed VAR change for parallel examplesAllen Byrne2012-08-261-1/+1
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* [svn-r22709] HDFFV-8129: reconfigured on jam, Remove overloading of ↵Allen Byrne2012-08-231-1/+1
| | | | | | autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files. Tested: h5committest
* [svn-r22426] Add examples/README file to be installed with examples.Larry Knox2012-06-021-0/+1
| | | | Text file only, but tested with h5committest.
* [svn-r20640] Remove export from "export LD_LIBRARY_PATH=${LL_PATH}" in ↵Larry Knox2011-04-261-2/+2
| | | | | | | | examples and hl/examples Makefiles. "export" breaks make install in Daily Tests on FreeBSD machines and isn't missed elsewhere. Tested on amani, freedom, jam, heiwa, and loyalty.
* [svn-r19506] Bring changes from revisions 19408, 19421, and 19442 from ↵Larry Knox2010-10-041-2/+3
| | | | | | branches/hdf5_1_8 to trunk. These revisions reorganize the compile scripts using h5cc.in, h5fc.in, and h5c++.in, add checks for installed examples to the scripts that run them after installation, and add DESTDIR for install as needed for RPMs. Tested on amani, heiwa and jam by h5committest and with CYGWIN.
* [svn-r19059] Brought changes from hdf5_1_8 to add version information for ↵Larry Knox2010-07-091-1/+6
| | | | | | fortran and c++ compilers in libhdf5.settings file and configure output (r18836), to install examples as part of make install (r18680), and to provide scripts to compile and run the examples after they are installed (r18817). Tested with new/h5committest on amani, heiwa, and jam.
* [svn-r15942] Purpose: Bug Fixes and Libtool UpgradeMike McGreevy2008-10-241-0/+4
| | | | | | | | | | | | | | | | | | Description: - Remove need to set LD_LIBRARY_PATH when using shared szip library. - Libtool 2.2.6a is now used to generate libraries. - 'make check install' dependency bug is fixed, and should no longer break the build. - removed hard coding of shell in config/commence.am, as this causes problems on Solaris with the new version of libtool. - RELEASE.txt with appropriate changes. Tested: - kagiso, smirom, linew (merged from 1.8, pretty quick tests)
* [svn-r13633] PurposeAlbert Cheng2007-04-111-0/+1
| | | | | | | | | | New feature Description: Added test scripts to test the compiler scripts (h5cc, h5fc and h5c++) Tested platform: Kagiso (serial and pp)
* [svn-r13359] Fixed a bug where the -shlib flag for h5cc would end up on the ↵James Laird2007-02-201-2/+2
| | | | | | | | Dependency line in the Makefile. Makefile change only. Tested on kagiso, to be used to test on cobalt.
* [svn-r13264] Updated Makefile.am with new THG copyright notice.Albert Cheng2007-02-071-2/+3
| | | | Ran reconfigure to generate the Makefile.in files.
* [svn-r13203] Unable to replicate Daily Test error, but hopefully this is a ↵James Laird2007-01-261-2/+3
| | | | | | | | | | fix anyway. The examples had been depending on the build libraries in src, but should have been depending only on the installed h5cc. Fixed this. Tested on kagiso (dependency change only, and was unable to replicate the problem on any system). Real test will be Daily Tests tonight.
* [svn-r13070] Added shared message example program in hdf5/examples.James Laird2006-12-181-2/+3
| | | | | | Also cleaned up one old API routine in H5Ppublic that isn't used. Tested on smirom and kagiso. More testing to follow.
* [svn-r12898] Description:Elena Pourmal2006-11-131-2/+3
| | | | | | | | Added new example for datasets regions; it uses two new functions H5Iget_name and H5Rget_name to get name of the dataset the region refernce points to. Platforms tested: heping
* [svn-r12608] Checked in External Link C examples.James Laird2006-08-221-2/+16
| | | | | | | | Since these examples need to follow filesystem paths, the Makefiles need to create directories in the examples directory; added this to the Makefile.am. Tested on Windows, mir, juniper
* [svn-r11780] Purpose:James Laird2005-12-091-44/+3
| | | | | | | | | | | | | | | | | Added high-level example directories Description: Refactored common code out of examples Makefiles.am, added high-level example directories, added packet table examples. Solution: Examples now draw from a common config/examples.am file, which contains rules for installing, uninstalling, and cleaning examples. High-level example directories are mostly empty, except for the C and C++ packet table tests. Platforms tested: mir, sleipnir, copper, shanti
* [svn-r11323] Purpose:Albert Cheng2005-08-311-1/+1
| | | | | | | | | | | | | | | | tidy up. Description: MPE option created *.clog file whenever it is executed in MPI. The cleanup of *.clog files were done in individual Makefile.in. Often, it is forgotten. Solution: Moved the cleaning of *.clog files to CHECK_CLEANFILES in commence.am so that it is applied whenever check-clean is called. Platforms tested: heping pp using MPE.
* [svn-r11185] Purpose:James Laird2005-08-021-1/+2
| | | | | | | | | | | | | | | Makefile feature Description: 'make check-clean' now cleans *.h5 files created by tests as well as .log and .chkexe files. Solution: check-clean is now a separate target in its own right, which cleans less than mostlyclean (check-clean < mostlyclean < clean < distclean). Platforms tested: mir, heping, modi4 (serial and parallel)
* [svn-r11179] Purpose:James Laird2005-08-011-4/+4
| | | | | | | | | | | | | | | | | | | Feature: check-clean target Description: 'make check-clean' cleans up output files from tests. Solution: Tests create foo.chkexe and foo.log files. Scripts create foo.chksh and foo.logsh files. 'make check-clean' will clean these files up so that the tests can be re-run. Also suppressed some not-very-useful output of Makefiles when it would echo commands. Platforms tested: mir, sleipnir, modi4 Misc. update:
* [svn-r11083] Purpose:James Laird2005-07-181-4/+3
| | | | | | | | | | | | Bug fixes Description: A number of minor changes to Makefiles. Some files will now be cleaned properly, some comments are more informative, etc. Platforms tested: heping, mir, modi4
* [svn-r11016] Purpose:James Laird2005-07-041-0/+4
| | | | | | | | | | | | | | | | Bug fix Description: Added dependencies to examples Makefiles so that examples can be run in parallel. Solution: The examples directories (for C, C++, and Fortran) all have some dependencies explicitly spelled out in their Makefiles.am. This is a good short-term solution, and should prevent errors in the Daily Tests. Platforms tested: mir, modi4 (parallel and sequential)
* [svn-r9988] Purpose:James Laird2005-02-111-4/+4
| | | | | | | | | | | | | | | | | | | | Bug fix Description: pmake (on modi4, for instance) complains about undefined variables if it is run without the -V flag, which turns those errors to warnings. Solution: Added test to configure.in to see if $MAKE will allow Makefiles with undefined variables. If not, sets -V flag in AM_MAKEFLAGS. Ensured that all custom make targets use AM_MAKEFLAGS. Also defined all variables that caused errors in top-level Makefile.am. This means that pmake can be used to build hdf5 *from the top level only*. To run make from a subdirectory, still need to use -V flag (or use make or gmake). Platforms tested: modi4, heping, copper, sleipnir
* [svn-r9902] Purpose:James Laird2005-02-011-0/+113
Configuration feature Description: HDF5 now uses automake to generate Makefiles Solution: Makefile.in files are now generated from Makefile.am files. To reconfigure (after chaning a Makefile.am or configure.in): /bin/sh bin/reconfigure.sh Platforms tested: Many
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