| Commit message (Collapse) | Author | Age | Files | Lines |
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If the AR command has embedded shell separators such as the case of
"AR = ar -X 64", $AR ends up as a blank.
Solution:
Put quotes around the command substitution string to protect against embedded
separators. Applied the same to both AR and RANLIB assignments.
Tested:
At Up (AIX 5.3) only because that was where I discovered the error
when AR is ar -X 64
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Description: examples/ph5example was being built and tested even in serial
mode. Added lines to the examples/Makefile.in to ensure that
this is not built and tested unless parallel has been enabled
by configure.
Tested: kagiso and smirom
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Bug fix.
Description:
It used to clean out all *.h5 when done but this could cause a racing
condition error if parallel make (e.g., gmake -j ...) is used because
the "rm ... *.h5 ..." would remove *.h5 generaged and are still used
by other test programs (e.g. h5_write/h5_read).
Solution:
Removed "*.h5" from the cleanup list since the test program has already
taken care of removing temporary *.h5 generated.
Tested platform:
Kagiso. Not triple platforms tested since this is just a simple shell
script change.
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Bug fix.
Descriptions:
Some examples are dependent on other files. E.g., a read program depend
a write program to create the data file first.
Adapted the dependencies from v1.8 Makefiles.
Tested:
By hand and also by h5committest.
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Change the 'coord' parameter for H5Sselect_elements() from 'hsize_t **' to
'hsize_t *' in this branch also.
Tested on:
Mac OS X/32 10.5.1 (amazon)
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removing the stream-vfd.
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Cleanup.
Added the compiler test script to distclean target.
Tested platform:
Just kagiso. No h5committest because it was a trivial addition to Makefile.in.
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The test scripts did not take in account that the binary has been installed
somewhere other than the original prefix. Added a provision to allow
explicit definition of $prefix to work.
Tested:
kagiso.
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features.
Description:
Added -shlib tests and verbosity control.
Tested Platform:
Kagiso.
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Updated comments and some cosmetic rearrangement.
No substance changes.
Tested platform:
Copper.
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Cleaned some old comments that are not valid any more.
Test:
Just eyeballed.
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new feature.
Description:
Added test scripts for testing the compiler commands.
Tested:
kagiso(serial & pp)
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new feature.
Description:
Changed it from using the -show to really compile and build the applications.
Tested:
kagiso.
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M MANIFEST
AM examples/testh5cc.sh.in
AM fortran/examples/testh5fc.sh.in
AM c++/examples/testh5c++.sh.in
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Platforms tested:
kagiso (too minor change)
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Tested platform: Kagiso (serial, pp)
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Tested platform: Kagiso (serial, pp)
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Added test
Description:
The deploy Daily Test is now more robust
Solution:
Previously, the Daily Tests (using the bin/snapshot script) would run
bin/deploy to install HDF5 into a directory other than the --prefix
specified at configure-time. However, this new installation was never
tested using make check-install.
Modified bin/snapshot to clean the test directory and run make check-install
for the newly-deployed library.
Platforms tested:
tested snapshot script on mir. No changes to code.
Trial by fire in Daily Tests tonight!
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Bug fix
Description:
Fixed errors in hl examples on modi4 and in parallel.
Solution:
Parallel error was a typo. D'oh! Used the wrong variable for h5pcc.
modi4 was because pmake needs all of its variables defined before they
are used. Forgot to define $(LIBHDF5_HL). 1.7 branch is smarter about
this. :)
Platforms tested:
mir, modi4
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Description: h5_group example didn't work on VMS; it turned out
that a group was not closed and since the default
file close degree is "weak", file was not closed either.
When program attempted to open the same file, system reported
an error since the file was "locked by another user".
UNIX systems apperently do not care and open the same file
without any problem.
Solution: Added H5Gclose calls.
Platforms tested: VMS server and heping
Misc. update:
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Appearance change.
Description:
depend1.in:
Change the style of the copyright generation commands to a simplier
style.
Dependencies:
Regenerated the Dependencies file.
Platforms tested:
Tested in heping in serial and parallel modes.
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bug fix.
Description:
In Janus (Tflops), the test would seg-fault in production (compiled
with -O). If compiled with -O0, it would be okay. Track down the
problem to the for loop index i & j being declared with type hsize_t
which is usually unsigned long int. Guess the Tflop compiler has
a bug in optimization that could not handle unsigned int as for loop
index.
Solution:
Since it is no need for i & j to be hsize_t and it makes more
sense to have them with type int. Changed them to int type.
Platforms tested:
Passed in tflops and colonelk here.
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Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
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Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)
Description:
Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation. So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.
I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
FreeBSD 4.10 (sleipnir) w/threadsafe
FreeBSD 4.10 (sleipnir) w/backward compatibility
Solaris 2.7 (arabica) w/"purify options"
Solaris 2.8 (sol) w/FORTRAN & C++
AIX 5.x (copper) w/parallel & FORTRAN
IRIX64 6.5 (modi4) w/FORTRAN
Linux 2.4 (heping) w/FORTRAN & C++
Misc. update:
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Bug fix
Description:
The examples would compile even if some header file were not
installed. That was because the CPPFLAGS has -I... components
that included the src directories.
Solution:
The h5cc or h5pcc commands should have all the necessarily
library include directories covered. Changed CPPFLAGS to
search only the examples source directory for local header
files.
Platforms tested:
No h5committest tests which do not check examples.
Hand tested it in sol.
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Bug fix typo
Description:
Correct typo in last fix... *sigh*
Platforms tested:
FreeBSD 4.9 (sleipnir)
too minor to require h5committest - Really! :-)
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Bug fix
Description:
Hack on include paths some more to make srcdir builds work correctly with
the [broken] dependency generation from the Intel 7.1 C compiler.
Platforms tested:
Linux 2.4 (titan) w/srcdir build
Too minor to require h5committest
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Bug fix
Description:
Added directory where actual source code is located to allow broken Intel
C 7.1 compiler to generate dependencies correctly.
Platforms tested:
Linux 2.4 (titan)
too minor to need h5committest
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Bug fix.
Description:
"make check" failed because the macro "$<" is not known to those
makes.
Solution:
Replace that macro with a string name in the form of a more basic
macro of "$@".
Platforms tested:
Using make in sol, copper.
Using gmake in eirene (serial and PP).
Misc. update:
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Description: C examples didn't have copyright notice.
Solution: Added copyright notice.
Platforms tested: verbena
Misc. update:
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feature
Description:
Install the C and Fortran compiler commands as h5pcc and h5pfc if
parallel mode is used.
Platforms tested:
"h5committested"
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Added *.clog which are generated by the MPE option, to the CLEAN list.
Platforms tested:
Tested in copper which supports the MPE option.
Misc. update:
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Purpose: Enhancement
Description: On 64-bit Solaris and on Crays h5_chunk_read example
displayed garbage instead of 0. One may mistakenly conclude
that example is broken.
h5_chunk_read reads data written by h5_extend_write.
h5_extend_write extends dataset and does only partial writes. Therefore
some data is never written to the file and since fill value
is not set up, garbage is read back by h5_chunk_read
Solution: Set up fill value to initialize data.
Platforms tested: arabica 64-bit and Cray T3E.
Misc. update:
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Code Cleanup
Description:
Warning messages were being produced by the "make" program because
the "docdir" was being specified twice as a target in the generated
Makefiles. This is because the "EXAMPLESDIR" was also defined as
"docdir".
Solution:
Made "EXAMPLESDIR" unique for C, Fortran, and C++ in the commence.in
file and removed EXAMPLESDIR from the Makefile.ins
Platforms tested:
Dangermouse (only affects make system, not code).
Misc. update:
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Improvement
Description:
if neither -f option nor $HDF5_PARAPREFIX was set, it exited.
Solution:
Use '.' (current directory) if neither -f option nor $HDF5_PARAPREFIX
is used. Try to proceed as much as possible.
Platforms tested:
only sleipnir since it was a simple fix and was failing in sleipnir
only.
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Bug Fix
Description:
Making of the programs when using the --srcdir option didn't work. It
couldn't find the files to compile.
Solution:
Specified where the files are by prepending the $(srcdir) macro to
them.
Platforms tested:
Linux
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Bug Fix
Description:
Ported the bug fix for h5cc failing on platforms from the 1.4 branch
to 1.5 branch. In a nutshell, when we ran "make check" in the
examples directory, libtool would get in the way trying to compile
things to .lo for us. but we didn't want libtool to do this.
Solution:
Made it so that make check will compile only the .c files to
executables without the intervening .lo stage...
Platforms tested:
Linux (Dangermouse and Platinum)
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fetures
Description:
The example code used to just run parallel I/O test in the current
directory which is most likely where the program is compiled.
In general, this directory is most likely not a parallel file system.
Therefore, the example code often fails.
Solution:
Add an option "-f <prefix>" for specifying the correct test files
pathname prefix. The program now requires an explicite file prefix
either via the "-f" option or the environment variable $HDF5_PARAPREFIX.
(With the proper setup of $HDF5_PARAPREFIX, the example code can run
automatically in situtaions such as batch job or gmake check.)
Also added feature to cleaup up the test files created.
Of course, an added option "-c" to turn OFF the cleanup action.
Platforms tested:
eirene, modi4, dangermouse (all parallel modes).
modi4 (serial) just to verify it can compile.
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Feature
Description:
Change examples to use the installed h5cc to compile the examples
programs. That will test the correctness of the installed software.
Removed examples from make targets in the top level so that it does
not get invoked in make or make check since one cannot compile
the example programs until after "make install" has completed.
Platforms tested:
eirene and modi4 (parallel)
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Cleaned out lots of warnings.
Platforms tested:
modi4 and eirene (parallel)
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Retired run_examples.sh. Its purpose is covered by the
"check" target.
Platforms tested:
No tests--hard to test something that is removed. Pretty
sure it is not needed by any Make targets.
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Bug fix
Description:
$TEST_PROG_PARA was included in the serial tests.
$TEST_PROG_PARA was not dependent on $LIBHDF5 (it should.)
Solution:
Adjusted the file to fix both problems.
Platforms tested:
eirene (pp, linux 2.2.), dangermouse (pp, linux 2.4)
modi4 (pp, -64) and modi4 serial (to verify that ph5example was not
tested at all.)
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Removing the DPSS (gridstorage) driver source code.
Description:
The DPSS (using Grid-Storage) driver is retired.
Removed the configure option with-gridstorage from configure.in.
Cvs remove the following files
./src/H5FDdpss.c
./src/H5FDdpss.h
./test/dpss_read.c
./test/dpss_write.c
Regenerated Dependencies files (some had to be hand-edited since
'make depend' did not cover them.)
Removed reference to DPSS Virtual file driver from H5F.c.
Platforms tested:
modi4 (Parallel; -with-gass=...), eirene, arabica (fortran, cxx).
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Bug Fix.
Description:
The H5Rget_object_type function could not get the object type for dataset
region references.
Solution:
Added a new function, H5Rget_obj_type, to replace H5Rget_object_type.
The new function requires the reference type as an additional parameter,
in order to allow queries on different reference types to be performed
correctly.
Platforms tested:
FreeBSD 4.4. (sleipnir)
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Purpose:
Changed to the new generic property list for dataset creation property
list.
Platforms tested:
Arabica, modi4 and Hawkwind
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Code cleanup for better compatibility with C++ compilers
Description:
C++ compilers are choking on our C code, for various reasons:
we used our UNUSED macro incorrectly when referring to pointer types
we used various C++ keywords as variables, etc.
we incremented enum's with the ++ operator.
Solution:
Changed variables, etc.to avoid C++ keywords (new, class, typename, typeid,
template)
Fixed usage of UNUSED macro from this:
char UNUSED *c
to this:
char * UNUSED c
Switched the enums from x++ to x=x+1
Platforms tested:
FreeBSD 4.4 (hawkwind)
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Purpose:
Feature Add
Description:
Added "install-example" and "install-all" to the Makefile system.
The behaviour of the "make install*" options:
make install - Installs binaries, libraries, include
files, and example programs.
make install-examples - Installs only the example programs.
The directories are:
${prefix}/doc/hdf5/examples/{c,c++,fortran}
make install-all - Install the binaries, libraries, include
files, example programs, and
documentation. The whole kit-n'-caboodle.
make uninstall-examples - Get rid of those example files (but not
the ${prefix}/doc/hdf5/examples/...
directories)
There's a new bin/ program which helps create directories which are
deeply nested called "mkdirs". It's a simple shell script.
Platforms tested:
Linux
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Feature
Description:
Added an example program showing how to use different virtual
file drivers. First example is to show the Split File driver.
Platforms tested:
eirene.
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Purpose:
Bug Fix
Description:
The way we were generating Dependencies and .depend files was broken.
If the $srcdir or other macros began with a ".", then it would match
anything and cause problems since it would then overwrite the
beginning of the header file's path.
Solution:
Wrote a Perl script which can handle this type of weirdness better.
It's only used when the environment is a GNU one with a GCC
compiler...
Platforms tested:
Linux
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Clean up compiler warnings.
Description:
Just code neatening mostly, some casts, etc.
Platforms tested:
FreeBSD 4.3 (hawkwind)
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