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| * | | [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and ↵Larry Knox2015-04-022-2/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure. Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths. Tested with h5committest.
| * | | [svn-r26660] HDFFV-9131: autotols reworkAllen Byrne2015-03-301-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove CXX_CONDITIONAL remove unneeded/obsolete sections. h5commtitest
| * | | [svn-r26594] Merge macros and fortran changes from dual_binary feature.Allen Byrne2015-03-251-2/+2
| | | | | | | | | | | | | | | | Tested: local linux
| * | | [svn-r26509] Run reconfigure after merges from autotools_rework branch.Jerome Soumagne2015-03-201-2/+0
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| * | | [svn-r26329] Merge of r26069, r26070, and r26072 from the ↵Dana Robinson2015-02-271-5/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | features/autotools_rework branch. Removed the configure option that allows selective disabling of individual internal filters (fletcher32, shuffle, etc.). This feature mucked up the code with a lot of #ifdefs, saved very little space, and was not scalable to a general scheme for library size reduction. We've decided to remove the feature while we investigate a more general scheme for decreasing the library size. Part of: HDFFV-9086 Tested on: h5committest
* | | | [svn-r26609] Neil fixed a bug that caused a failure when a source file was ↵Elena Pourmal2015-03-261-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | closed. Removed comments from the example. Tested on jam.
* | | | [svn-r26568] Simplified percival example.Elena Pourmal2015-03-241-12/+9
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* | | | [svn-r26565] Since fill values for VDS do not work at this point initialized ↵Elena Pourmal2015-03-241-0/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | the read buffer to show that VDS data is read correctly, leaving unmapped data untouched. Tested on jam.
* | | | [svn-r26564] Modified related files after adding example/h5_vds-percival.cElena Pourmal2015-03-245-4/+13
| | | | | | | | | | | | | | | | Tested on jam.
* | | | [svn-r26562] Added examples for percival use case.Elena Pourmal2015-03-241-0/+245
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* | | | [svn-r26557] Removed commented VDS read code. tested on jam.Elena Pourmal2015-03-241-2/+0
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* | | | [svn-r26431] Add new example (reorder to match closer to makefile)Allen Byrne2015-03-111-12/+13
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* | | | [svn-r26420] Added new example for simple I/O. Modified other examples ↵Elena Pourmal2015-03-108-30/+227
| | | | | | | | | | | | | | | | according to the suggestion in H5VDS-7 (see VDS-178)
* | | | [svn-r26376] Added new examples for fixed-size Excalibur and for Eiger use ↵Elena Pourmal2015-03-057-25/+435
| | | | | | | | | | | | | | | | | | | | | | | | cases. Fixed several typos. Tested on jam.
* | | | [svn-r26360] Modified CMake files to accomodate new h5_vds-exc.c example.Elena Pourmal2015-03-042-0/+3
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* | | | [svn-r26359] Added h5_vds-exc.c to misc. files and ran bin/reconfigure.Elena Pourmal2015-03-043-6/+10
| | | | | | | | | | | | | | | | Tested on jam.
* | | | [svn-r26357] Added mapping example for the Excalibur detector use case.Elena Pourmal2015-03-041-0/+212
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* | | | [svn-r26343] Improved output.Elena Pourmal2015-03-021-4/+4
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* | | | [svn-r26342] Added usage of the new H5S*_regular_hyperslab functions.Elena Pourmal2015-03-021-0/+12
| | | | | | | | | | | | | | | | Tested on jam.
* | | | [svn-r26306] Merge r26296 through 26304 from trunk to vds branch.Neil Fortner2015-02-251-2/+3
|\ \ \ \ | |/ / / | | | | | | | | | | | | | | | | | | | | It should no longer be necessary to use --enable-using-memchecker make check fails due to an issue with h5ls apparently unrelated to the merge Tested: ummon
| * | | [svn-r26303] remove files with .clog2 extension generated by MPE when doing ↵Mohamad Chaarawi2015-02-251-2/+3
| | |/ | |/| | | | | | | make clean.
* | | [svn-r26297] Changed example and h5dump according to suggestions at today's ↵Elena Pourmal2015-02-252-17/+15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | code review VDS-176. BNF has been updated too. Now h5dump displays VDS like this: HDF5 "vds.h5" { GROUP "/" { DATASET "VDS" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) } STORAGE_LAYOUT { VIRTUAL { HYPERSLAB { (0,0)-(0,5) }; a.h5; A; ALL; HYPERSLAB { (1,0)-(1,5) }; b.h5; B; ALL; HYPERSLAB { (2,0)-(2,5) }; c.h5; C; ALL; } } } FILTERS { ....... I just commented the code with "EIP" and didn't delete to simplify the review with Allen tomorrow. Tested on jam
* | | [svn-r26296] Merge r26050 through 26295 from trunk to vds branch.Neil Fortner2015-02-242-3/+3
|\ \ \ | |/ / | | | | | | Tested: ummon
| * | [svn-r26208] Update cmake minimumsAllen Byrne2015-02-181-1/+1
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| * | [svn-r26188] Merged autotools fixes into the trunk:Scot Breitenfeld2015-02-161-1/+2
| | | | | | | | | | | | HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
| * | [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from ↵Mohamad Chaarawi2015-02-161-1/+0
| |/ | | | | | | | | | | | | | | | | | | | | | | autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes. tested with h5committest.
* | [svn-r26269] Minor cleanup in the comments.Elena Pourmal2015-02-221-17/+17
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* | [svn-r26268] Added VDS example.Elena Pourmal2015-02-224-5/+253
|/ | | | | | | I ran bin/reconfigure on jam and it modified test/Makefile.in. May be Neil fixed Makefile.am, but didn't run reconfigure? Tested on jam.
* [svn-r25496] Description:Quincey Koziol2014-07-301-2/+2
| | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r25397] - remove configure checks for MPI_File_get_size and BigMohamad Chaarawi2014-07-071-1/+0
| | | | | MPI_File_set_size as they are supported by most MPI implementations. - fix bug in t_mpi.c (HDFFV-8856)
* [svn-r25188] Implement change to cmake_ext_mod config folderAllen Byrne2014-05-141-1/+1
| | | | Tested: local linux
* [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-251-1/+0
| | | | | | | | | | | back fix for removing rpaths from l ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co nfigure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
* [svn-r25113] Fixed Subversion EOL and executable attributes. No code changes.Dana Robinson2014-04-257-471/+471
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* [svn-r24997] Added compiler versions for mpich to settings file and ↵Larry Knox2014-04-092-15/+25
| | | | | | | | | | | | | configure summary. For make installcheck, compile and run installed examples using the installed scripts. They were being compiled but not run. Add Fortran2003 examples to the run-ex-fortran script when fortran2003 is enabled. Set flag to -O3 in production mode for Intel compilers other than those with specified other settings. Gentoo patches: Remove unnecessary setting of LD_LIBRARY_PATH from configure. Prevent potential array subscript out of bounds error in perform/pio_engine.c and sio_engine.c. Tested with h5committest on jam, koala, ostrich and platypus, on emu and kite, and parallel tests on jam, koala and platypus with mpich built with gnu 4.8.2 and with intel compilers.
* [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS ↵Allen Byrne2014-03-311-35/+408
| | | | | | instead of INCLUDES. Update automake to 1.14.1 h5committest
* [svn-r24864] Description:Quincey Koziol2014-03-211-1/+0
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r24851] example causes modal permission dialog to popup on windows. ↵Allen Byrne2014-03-202-5/+5
| | | | build but do not execute.
* [svn-r24850] example causes modal permission dialog to popup on windows. Do ↵Allen Byrne2014-03-201-2/+3
| | | | not build.
* [svn-r24824] HDFFV-8700 -Allen Byrne2014-03-181-1/+1
| | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
* [svn-r24789] Bump up the minimum cmake versionAllen Byrne2014-03-131-1/+1
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* [svn-r24782] HDFFV-8700 -Allen Byrne2014-03-111-6/+6
| | | | KitWare recommendations: Change CMake commands to lower case.
* [svn-r24781] HDFFV-8700 -Allen Byrne2014-03-112-28/+28
| | | | | | | KitWare recommendations: Change CMake commands to lower case. Remove INCLUDE_DIRECTORIES in src for target level includes. Change ADD_DEFINITIONS package debug defines into CMake option. Remove -DNDEBUG
* [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-011-0/+3
| | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autools, and h5committest
* [svn-r24194] Don't add hdf5 library dependencies to lib files when ↵Larry Knox2013-09-241-0/+1
| | | | | | --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. Tested with h5committest and on hdf-duck.
* [svn-r24029] Move TESTS to seperate file to allow easier editing by all ↵Allen Byrne2013-08-192-56/+63
| | | | | | developers. Tested: local linux
* [svn-r23745] HDFFV-8461: Add Windows /MT supportAllen Byrne2013-06-101-0/+2
| | | | This adds the UserMacros.cmake support needed.
* [svn-r23305] HDFFV-8257: szip still used even if headers are not found. ↵Allen Byrne2013-02-181-1/+1
| | | | | | Change configure to test the result of the CHECK HEADERS call before checking for the library. Tested: local linux, h5committest
* [svn-r23160] HDFFV-8227: Mac DARWIN requires CMake 2.8.10Allen Byrne2013-01-141-1/+1
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* [svn-r23093] Fixed API to be 1.6 compliant, removed deprecated APIsScot Breitenfeld2012-12-129-19/+19
| | | | Checked: jam (gnu, mpi) --disable-deprecated-symbols, --with-default-api-version=v16
* [svn-r23091] Changed C examples to reflect changes in documentation via Barbara;Scot Breitenfeld2012-12-1213-5/+843
| | | | | | mainly program additions from tutorial. Tested: jam (gnu compilers)
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