| Commit message (Collapse) | Author | Age | Files | Lines |
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file - files not in src or test.
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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Tested: h5committest --PASSED--
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sed -e 's/^ \*[ ]*\([A-Z]\)\([a-z]\)/ * \1\2/g' H5Zf.c | sed -e 's/^ \*[ ]*\([a-z]\)/ * \1/g' | sed -e 's/^ \*[ ]*\([0-9]\)/ * \1/g'
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See HDFFV-9291: Check for unused C functions
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Crucible review HDF5-238.
Tested on platypus with gcc/gfortran 4.9.2, jam and emu with the default compilers.
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HDFFV-9049
Intel 15.0 15.0.1 Fails with --enable-fortran2003
Added BIND to the Fortran 2003 functions.
Tested: windows (tested concept)
linux (--enable-fortran and --enable-fortran2003)
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statements for windows.
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Items merged: fortran directory,
src/libhdf5.settings.in
configure.in configure
MANIFEST
Tested: (all platforms used by daily tests, both with --enable-fortran and --enable-fortran2003)
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Bring Coverity revisions from branch back to trunk, and clean up some other
misc. compiler warnings also.
r19500:
Fix coverity items 1446 and 1447. Moved up calls to memset in test_cont in
ohdr.c so the test never tries to close uninitialized locations.
r19501:
Fix coverity items 1398-1445. Various uninitialized variable errors in fheap.c.
r19502:
Fixed coverity issue 579 and some additional warnings in the file as well.
r19503:
Bug fix: This fix addressed the "RESOURCE_LEAK" problems #789 and 790, run 26
r19504:
minor mods to try to keep coverity from flagging false positives.
r19505:
Fixed coverity issues 566 - 571. Declared variables that are passed to functions that use them as arrays to be arrays of size 1.
Tested on:
Mac OS X/32 10.6.4 (amazon) w/debug, production & parallel
(h5committested on trunk)
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Bring back changes from Coverity session on 1/15/10:
r18111:
Fix Coverity issue #130: make certain that the cache gets freed on error.
r18112:
Fix Coverity issue #43 by making cache testing calls protected by 'pass'
variable.
r18113:
Fix Coverity issue #129 by releasing the cache on error.
r18115:
Coverity #45 fix: patched an error check in H5Screate_simple to prevent future dereferencing of a NULL point.
Added a verification in test/th5s.c.
r18116:
Fix Coverity issue #43 by releasing cache on error.
r18117:
Coverity #362,363 by adding HGOTO_DONE, freeing allocations and associated changes. REsolving coverity results #364-368, 369, 370-372, 377, 379, and 380.
r18118:
Fix Coverity issue #42: assert that cache & test specification pointer are
valid.
r18122:
Coverity #362,363 by adding HGOTO_DONE and freeing allocations. This also takes care of #357,358.
r18123:
Coverity #359-361, 373-376: Added HGOTO_DONE(FAIL) statement after checking allocation for NULL. Verified allocation is freed in done block.
r18128:
Fixed coverity issue #10 -- removed dead code.
Tested on:
Mac OS X/32 10.6.2 (amazon)
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Remove trailing whitespace from C/C++ source files, with the following
script:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Tested on:
Mac OS X/32 10.5.5 (amazon)
No need for h5committest, just whitespace changes...
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Fixed validation failure when compiled with -i8 and the g95 compiler
Description:
Fixed "off by one error" when converting C character buffer
into fortran character buffer in h5aget_name_by_idx_c
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wrapper.
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test and source codes.
This check-in should address Fortran failures on liberty and smirom.
Platforms tested: kagiso with Intel, smirom with g95 -fPIC, liberty with gfortran42
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failing previously on linew.
Currently only one test (dense attributes) is failing. It looks like C library problem and we
have a similar bug report in Bugzilla: when dense storage is used, attributes are not written
to the file; somehow similar C test doesn't expose the problem while Fortran test does.
Platforms tested: linew, kagiso with g95 and PGI
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branch back into the trunk (up to revision 14921)
Platforms tested: kagiso with g95 and Intel compilers; more testing will be done after checking in a fresh
copy from the trunk. New code itself was tested with all Fortran compilers available at THG
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New fortran wrappers added.
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Change H5Oget_info -> H5Oget_info_by_name and re-add H5Oget_info in a
simpler form for querying a particular object, to align with other new API
routines.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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Change H5Adelete2 -> H5Adelete_by_name and un-deprecate H5Adelete1 back
to H5Adelete, for better consistency with new other API routiens.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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Changed H5Acreate2 -> H5Acreate_by_name, to be more consistent with
other new API routines.
Re-added simpler form of H5Acreate2, which creates attributes directly
on an object.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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Change H5Aopen -> H5Aopen_by_name, in order to be more consistent with
other new API routines.
Re-add H5Aopen as a simpler routine, to open attributes on a particular
object. (Much like the old H5Aopen_name routine).
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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Put H5Acreate() under API versioning, with all internal usage shifted
to H5Acreate2().
Add regression tests for H5Acreate1().
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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Move H5Aopen_name() routine to deprecated symbol section and replace
internal usage with H5Aopen().
Add simple regression test for H5Aopen_name() to deprecated routine
test.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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Move H5Aopen_idx() into deprecated symbols section, replacing all
internal usage with H5Aopen_by_idx().
Add simple regression test for H5Aopen_idx().
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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Move H5Aget_num_attrs() into deprecated routines section, replacing all
internal usage with H5Oget_info().
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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Make H5Adelete versioned and switch internal library use to H5Adelete2.
Add regression test for H5Adelete1
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
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copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
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Previous implementation failed to compile on MAC OS X Tiger 10.4 and AIX 5.2
In previous implementation, each overloaded Fortran function called the same
C function. Since declaration of parameters in INTERFACE block for
C Function differed, some compilers issued warnings but g95 on MAC and AIX
failed to compile.
Solution: Add C wrappers corresponding to each overloaded Fortran function
to call C stub function. This fix should also reduce number of warnings
on IRIX systems.
Platforms tested: MAC OS and AIX 5.2 (copper) with g95;
sol (with Sun compilers), heping with PGI compilers
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Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
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Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)
Description:
Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation. So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.
I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
FreeBSD 4.10 (sleipnir) w/threadsafe
FreeBSD 4.10 (sleipnir) w/backward compatibility
Solaris 2.7 (arabica) w/"purify options"
Solaris 2.8 (sol) w/FORTRAN & C++
AIX 5.x (copper) w/parallel & FORTRAN
IRIX64 6.5 (modi4) w/FORTRAN
Linux 2.4 (heping) w/FORTRAN & C++
Misc. update:
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Code cleanup
Description:
Clean up warnings, remove unused routines, tidy things up a lot.
Platforms tested:
h5committest
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Code cleanup
Description:
Cleaned up various compiler warnings
Platforms tested:
FreeBSD 4.9 (sleipnir)
Linux 2.4 (verbena) w/FORTRAN
too minor for h5committest
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Updated, cleanup or added Copyright notice.
Platforms tested:
"h5committested"
Misc. update:
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Purpose: Added copyright statement; cleaned code and fixed bugs for
Windows and Cray T90IEEE
Description: Fortran files did not have copyright statement; VL types
did not work on T90IEEE since I never brought the correct code
from 1.4 branch; there were compilation warnings on Windows;
some character parameters were not passed correctly to C stubs
causing tests to fail on Windows.
Solution: Added copyright statement and clean the code.
Platforms tested: CRAY T90IEEE, arabica, modi4 with parallel, Windows 2000
Only static tests (both debug and release) passed on Windows.
DLLs have multiple problems ;-)
Misc. update:
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Code cleanup
Description:
While working on the "External test" failure I restructured and
cleaned up some C stub code.
Platforms tested:
dangermouse (Linux 2.4)
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Purpose:
Bug fix
Description:
I borrowed function HDpackFstring from the HDF4 Library and
left name unchanged. It causes linking problems for Fortran users
that use both HDF4 and HDF5 Libraries in their applications.
Solution:
Changed the name to be HD5packFstring
Platforms tested:
Solaris 2.7
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