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* Update copyright headers (#2184)Larry Knox2022-11-011-1/+0
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Implemented C matching (and general) H5Dfill Fortran wrappers (#2152)Scot Breitenfeld2022-10-111-45/+0
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* Develop clang 13 format (#1933)Allen Byrne2022-07-261-9/+9
| | | | | * Update format source to clang 13 * More format changes
* Fixed H5Dget_storage_size_f for zero sized datasets (#1430)Scot Breitenfeld2022-02-111-4/+4
| | | | | | | | | | | * H5Lexists docs: Removed reference to 1.8.16 since the change is the 1.8.x releases, HDFFV-11289 * H5Oget_info_by_name, name can be any object, not just a group * fixed handling size 0 datasets * fixed handling size 0 datasets * format
* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-071-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Update license url part2 (#333)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Clang-format of source filesAllen Byrne2020-09-301-634/+673
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* Trim trailing whitespaceQuincey Koziol2020-04-201-5/+5
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* Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim()Jerome Soumagne2019-10-081-8/+8
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* HDFFV-10345 spelling errorsAllen Byrne2018-02-051-5/+5
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk.Scot Breitenfeld2015-08-111-1327/+179
| | | | Tested: h5committest --PASSED--
* [svn-r27489] reverted merge of branchScot Breitenfeld2015-08-111-179/+1327
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* [svn-r27377] Cleaned-up comment formatting:Scot Breitenfeld2015-07-141-140/+140
| | | | sed -e 's/^ \*[ ]*\([A-Z]\)\([a-z]\)/ * \1\2/g' H5Zf.c | sed -e 's/^ \*[ ]*\([a-z]\)/ * \1/g' | sed -e 's/^ \*[ ]*\([0-9]\)/ * \1/g'
* [svn-r26972] Removed unused C functions.Scot Breitenfeld2015-04-291-136/+0
| | | | See HDFFV-9291: Check for unused C functions
* [svn-r26866] Removed the default REAL and DOUBLE PRECESION dependency.Scot Breitenfeld2015-04-211-1012/+0
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* [svn-r26819] Updated H5A, H5E, H5D, H5F APIs to F2003, added ifdef for parallel.Scot Breitenfeld2015-04-151-181/+181
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* [svn-r26481] Removed compiler warnings. HDF5-239Scot Breitenfeld2015-03-191-4/+4
| | | | Tested: h5committest.
* [svn-r26401] Fixed warnings in the C stubs for Fortran wrappers. See ↵Elena Pourmal2015-03-091-13/+13
| | | | | | Crucible review HDF5-238. Tested on platypus with gcc/gfortran 4.9.2, jam and emu with the default compilers.
* [svn-r26010] Fix for:Scot Breitenfeld2015-01-221-154/+134
| | | | | | | | | | HDFFV-9049 Intel 15.0 15.0.1 Fails with --enable-fortran2003 Added BIND to the Fortran 2003 functions. Tested: windows (tested concept) linux (--enable-fortran and --enable-fortran2003)
* [svn-r24866] Fixed compiler warnings using gnu 4.8.1 Scot Breitenfeld2014-03-221-2/+2
| | | | Tested: jam( intel, gnu, pgi)
* [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.Dana Robinson2013-10-311-20/+20
| | | | | | | | | | | | | Prep work for adding a memory free function, part of HDFFV-8551. Tested on: 32-bit LE linux (jam) * with C++, Fortran * with thread safety on These are minor changes (almost entirely renaming foo functions to HDfoo) that don't change functionality. This should not require a full commit test.
* [svn-r22482] Maintenance:Elena Pourmal2012-06-231-23/+1
| | | | | | | | - Fixed a typo in return value of the nh5dread_f_c function ( was 1 instead of 0 on success); fixed the return value to make it consistent with other Fortran functions; cleaned the code from debug statements. Platforms tested: jam with GNU and Intel compilers, fortran 2003 feature.
* [svn-r21248] Mereged the F2003 branch into the trunk.Scot Breitenfeld2011-08-181-246/+732
| | | | | | | | | Items merged: fortran directory, src/libhdf5.settings.in configure.in configure MANIFEST Tested: (all platforms used by daily tests, both with --enable-fortran and --enable-fortran2003)
* [svn-r18197] Description:Quincey Koziol2010-01-301-1/+1
| | | | | | | | | Trim trailing whitespace from source code files with this command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r16773] Description:Scot Breitenfeld2009-04-171-0/+28
| | | | | | Added Fortran API h5dget_access_plist_f Platforms Tested: Smirom - pgf90 ifort
* [svn-r15628] Description:Quincey Koziol2008-09-161-12/+12
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15060] Maintenance: File space identifier was not closed causing ↵Elena Pourmal2008-05-211-1/+4
| | | | | | memory growth; fixed Platforms tested: kagiso (minor fix)
* [svn-r14923] Maintenance: This check-in merges changes from the fortran_1_8 ↵Elena Pourmal2008-05-031-9/+52
| | | | | | | branch back into the trunk (up to revision 14921) Platforms tested: kagiso with g95 and Intel compilers; more testing will be done after checking in a fresh copy from the trunk. New code itself was tested with all Fortran compilers available at THG
* [svn-r14903] Undoing change committed in r14902.Scot Breitenfeld2008-04-301-52/+9
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* [svn-r14902] Merged fortran_1_8 branch changes r14505:14901 into the trunk. ↵Scot Breitenfeld2008-04-301-9/+52
| | | | New fortran wrappers added.
* [svn-r14199] Description:Quincey Koziol2007-10-111-24/+12
| | | | | | | | | | | | | | | | | | | | | Add H5Dcreate to API versioned routines, replacing internal usage with H5Dcreate2 Fix thread-safe error stack initialization for API versioned error stack printing routines. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14193] Description:Quincey Koziol2007-10-081-14/+11
| | | | | | | | | | | | | | | | | | | Make H5Dopen versioned and change all internal usage to use H5Dopen2 Add simple regression test for H5Dopen1 Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14192] Description:Quincey Koziol2007-10-081-18/+11
| | | | | | | | | | | | | | | | | | Deprecate H5Dextend in favor of H5Dset_extent (without using API versioning, due to changed behavior) and switch internal usage to H5Dset_extent Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12752] Descripton: This is a port to G95 compiler for MAC OSX and AIX 5.2Elena Pourmal2006-10-121-8/+741
| | | | | | | | | | | | | | | | Previous implementation failed to compile on MAC OS X Tiger 10.4 and AIX 5.2 In previous implementation, each overloaded Fortran function called the same C function. Since declaration of parameters in INTERFACE block for C Function differed, some compilers issued warnings but g95 on MAC and AIX failed to compile. Solution: Add C wrappers corresponding to each overloaded Fortran function to call C stub function. This fix should also reduce number of warnings on IRIX systems. Platforms tested: MAC OS and AIX 5.2 (copper) with g95; sol (with Sun compilers), heping with PGI compilers
* [svn-r11771] Purpose:Quincey Koziol2005-12-081-3/+0
| | | | | | | | | | | | Code cleanup Description: Fix a bunch of warnings flagged by Windows compilers. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-132/+132
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10970] Purpose: New feature/bug #350 fixElena Pourmal2005-06-221-3/+6
| | | | | | | | | | | | | | | | | | | | Description: When compiler flag was used to set the size of Fortran integer to 8 bytes, library would fail. Solution: Cleaned up the code; added detection of Fortran INTEGER type size and appropriately defined int_f type for C-stubs routines. Platforms tested: Solaris 2.8 32 and 64-bit, AIX 5.1 64-bit parallel PGI Fortran with -i8 flag on heping Absoft Fortran with -i8 flag on heping g95 on mir (Fortran integer is 8 bytes by default that cannot be changed - compiler bug ;-) AIX Fortran with -qintsize=8 32 and 64-bit modes on copper Misc. update:
* [svn-r9801] Purpose:Quincey Koziol2005-01-101-82/+79
| | | | | | | | | | | | Bug fix Description: Belatedly chase change of hobj_ref_t in C APIs. Platforms tested: FreeBSD 4.10 (sleipnir) w/backward compatibility turned on IRIX64 6.5 (modi4) w/FORTRAN h5committest
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9250] Purpose:Quincey Koziol2004-09-141-2/+2
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Correct typedef for dataset region references to avoid struct alignment issues on Crays. Solution: Change the typedef for hdset_reg_ref_t from a struct to an array of unsigned char's of the correct size and propagate the appropriate adjustments around the code. Platforms tested: FreeBSD 4.10 (sleipnir) Linux 2.4 (verbena) w/fortran Cray T90 (subzero) w/fortran Cray SV1 (wind) w/fortran & parallel Cray T3E (cyclone) w/fortran & parallel
* [svn-r8404] Elena Pourmal2004-04-221-386/+11
| | | | | | | | | | | | | | | | | Purpose: Maintenance Description: h5dwrite/read_f and h5awrite_read_f functions were overloaded with dims argument being of type INTEGER and INTEGER(HSIZE_T). We promised to remove overloading in 1.4 release. It was removed from documentation but not from the source code. Solution: Finish code cleanup. Platforms tested: Solaris 2.7 32 and 64 bit, and copper with --enable- parallel. Windows are broken, so Kent and Xuan will test it with their changes later. Misc. update:
* [svn-r7639] Purpose:Quincey Koziol2003-10-151-15/+3
| | | | | | | | | | Code cleanup Description: Remove UNICOS-specific ifdefs and replace with portable code. Platforms tested: h5committest
* [svn-r7611] Purpose:Quincey Koziol2003-10-131-48/+48
| | | | | | | | | | | | Code cleanup Description: Cleaned up various compiler warnings Platforms tested: FreeBSD 4.9 (sleipnir) Linux 2.4 (verbena) w/FORTRAN too minor for h5committest
* [svn-r7529] Purpose: Code cleanupElena Pourmal2003-10-011-7/+7
| | | | | | | | | | | | | Description: On Linux systems valdrind tool complained about memroy leaks in the following statements like if(!a) free(a); Solution: replaced the statements with if ( a != NULL) free(a); Platforms tested: eirene (too small for committest) Misc. update:
* [svn-r7341] Purpose:Albert Cheng2003-08-111-12/+12
| | | | | | | | | Updated, cleanup or added Copyright notice. Platforms tested: "h5committested" Misc. update:
* [svn-r7318] Purpose:Quincey Koziol2003-08-081-4/+4
| | | | | | | | | | | Code cleanup Description: Switched 'hobj_ref_t' from funny structure with array inside to just be 'haddr_t', since that was equivalent and less confusing. Platforms tested: h5committested
* [svn-r6772] Elena Pourmal2003-04-291-18/+16
| | | | | | | | | | | | | | | | | | Purpose: Windows maintenance and code cleanup Description: There were a lot of places in the source code where varibale was declared but never used. Solution: Cleaned the source code to avoid warnings on Windows adn Unix platforms. Platforms tested: arabica, modi4, Windows Probably my environment is wrong on Linux, cannot compile at all when fortran is enabled If daily tests fails tomorrow, this will be my fault but I want to go home now :-) Misc. update:
* [svn-r6684] Elena Pourmal2003-04-151-2/+30
| | | | | | | | | | | | | | | | | | | Purpose: Added copyright statement; cleaned code and fixed bugs for Windows and Cray T90IEEE Description: Fortran files did not have copyright statement; VL types did not work on T90IEEE since I never brought the correct code from 1.4 branch; there were compilation warnings on Windows; some character parameters were not passed correctly to C stubs causing tests to fail on Windows. Solution: Added copyright statement and clean the code. Platforms tested: CRAY T90IEEE, arabica, modi4 with parallel, Windows 2000 Only static tests (both debug and release) passed on Windows. DLLs have multiple problems ;-) Misc. update:
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