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* Merge hdf5 1 10 8 (#1154)hdf5-1_10_8Larry Knox2021-10-291-1965/+2119
| | | Merge HDF5 1.10.8 release files to 1.10/master
* Merge pull request #2845 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:hdf5_1_10 to ↵Scot Breitenfeld2020-08-261-40/+0
| | | | | | | hdf5_1_10 * commit '817af161a8d463eaec385d0959e06b546f27ae45': HDFFV-11018 Add Fortran H5F_LIBVER_V*_F definitions
* Removed trailing whitespace from source files.Dana Robinson2020-05-261-5/+5
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* HDFFV-10345 splelling and whitespace correctionsAllen Byrne2018-02-051-5/+5
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* Change copyright headers to replace url referring to file to be removedlrknox2017-04-141-6/+4
| | | | | | | | and replace it with new url for COPYING file. Fix 2 lines in java error test expected output file where messages include line numbers changed by reducing the copyright header by 2 lines.
* [svn-r28761] Description:Quincey Koziol2016-01-011-1/+1
| | | | | | | | | | | | Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree in the library and tests (and use of H5free_memory and H5Dvlen_reclaim). Also make H5Ocopy use a private version of H5Lexists, which doesn't internally throw (and suppress) errors when an object (or the path to it) isn't found in the destination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28555] Normalization of Fortran directory with revise_chunks (minor).Dana Robinson2015-12-101-0/+8
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial, with and without the direct VFD enabled
* [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk.Scot Breitenfeld2015-08-111-1388/+1239
| | | | Tested: h5committest --PASSED--
* [svn-r27489] reverted merge of branchScot Breitenfeld2015-08-111-1239/+1388
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* [svn-r27392] removed unused C functionsScot Breitenfeld2015-07-151-30/+0
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* [svn-r27377] Cleaned-up comment formatting:Scot Breitenfeld2015-07-141-905/+905
| | | | sed -e 's/^ \*[ ]*\([A-Z]\)\([a-z]\)/ * \1\2/g' H5Zf.c | sed -e 's/^ \*[ ]*\([a-z]\)/ * \1/g' | sed -e 's/^ \*[ ]*\([0-9]\)/ * \1/g'
* [svn-r27137] svn merge -r27115:27135 https://svn.hdfgroup.uiuc.edu/hdf5/trunkScot Breitenfeld2015-06-021-8/+8
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| * [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-8/+8
| | | | | | | | | | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* | [svn-r26934] H5test_kind.F90 now generates all the interfaces for H5A, H5D, ↵Scot Breitenfeld2015-04-271-1/+0
| | | | | | | | and H5P REAL interfaces depending on the KIND available.
* | [svn-r26866] Removed the default REAL and DOUBLE PRECESION dependency.Scot Breitenfeld2015-04-211-358/+0
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* | [svn-r26845] H5P and H5A BIND(C) added to APIsScot Breitenfeld2015-04-201-152/+152
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* | [svn-r26827] Combined parallel APIs and removed no longer needed parallel files.Scot Breitenfeld2015-04-161-0/+240
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* [svn-r26479] Fix for: HDFFV-9162Scot Breitenfeld2015-03-191-18/+9
| | | | | | | | h5pget_class_f should return hid_t for classtype Also removed all left over C comment artifacts /* and */ in the Fortran comments. Tested: h5committest
* [svn-r26010] Fix for:Scot Breitenfeld2015-01-221-97/+128
| | | | | | | | | | HDFFV-9049 Intel 15.0 15.0.1 Fails with --enable-fortran2003 Added BIND to the Fortran 2003 functions. Tested: windows (tested concept) linux (--enable-fortran and --enable-fortran2003)
* [svn-r25475] Fixed for nh5pget_fill_valuec_c where we called the wrong functionScot Breitenfeld2014-07-231-3/+3
| | | | | | | | ret_value = nh5pset_fill_value_c(prp_id, type_id, _fcdtocp(fillvalue)) HDFFV-8879 Tested: jam( intel, gnu)
* [svn-r25440] Fixed type conversion in h5pset_fill_value and fixed forScot Breitenfeld2014-07-211-17/+19
| | | | | | | | | nh5pget_fill_valuec_c we call the wrong function ret_value = nh5pset_fill_value_c(prp_id, type_id, _fcdtocp(fillvalue)) HDFFV-8879 Tested: jam( intel, gnu)
* [svn-r25133] Rudimentary changes; changed the casting of hid_t_f variables ↵Scot Breitenfeld2014-04-281-8/+8
| | | | | | that used a casting of int_f to use a casting of hid_t_f. Tested: jam (gnu)
* [svn-r24939] Fix for HDFFV-8309 Fortran wrappers for H5Pget/set_file_image ↵Scot Breitenfeld2014-04-011-0/+70
| | | | | | | functions Tested: jam (gnu, intel, pgi)
* [svn-r24937] Adds an H5free_memory() function to the library for use withDana Robinson2014-03-311-1/+1
| | | | | | | | | | | | functions that return library-allocated memory. The test and tool code were modified to use this new function where it's appropriate. Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551 Tested on: 64-bit Windows 7 w/ VS2012 32-bit LE linux w/ parallel and fortran (jam) 32-bit LE linux w/ fortran and C++ (jam)
* [svn-r24726] Description:Quincey Koziol2014-02-201-51/+26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Revert some earlier usage of strncpy, which was incorrect. Bring Coverity changes from branch back to trunk: r20821: Use HDstrncpy. --gh (Fixed already, with strdup) r20822: (Not merged, incorrect use of HDstrncpy()) r20823: (Not merged, incorrect use of HDstrncpy()) r20824: Maintenance: Bug fix: addressed CID 666. Value stored at *expression_len should be used in the call to HD5packFstring to avoid overflow (and unnecessary arithmetic calculation and casting) r20825: Issue 642: Added check for error and handler with print to stderr and exit. r20826: Undo revision 20818, as that issue has already been fixed in the 1.8 branch and trunk (but not coverity branch) r20827: (Not merged, incorrect use of HDstrncpy()) r20828: Use HDstrncpy. --gh (Corrected use of strncpy()) r20829: Check return of H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0. Check if H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname) was successful and allow print. Otherwise filename and objname are not created. (init those to NULL) r20830: resolved coverity issues 939, 940, 941, 944, and 947. all were complaints about use of sprintf, and in all cases, the buffers used were large enough for all eventualities. Resolved issue by replacing calls to sprintf with calls to snprintf. r20831: Maintenance: Addressed CID 852 Replaced sprintf with snprintf r20832: Purpose: Fix valgrind issues with hl/examples/ex_image2 Description: Modified hl/examples/ex_image2 to free global "gbuf" before exit. Tested on: Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety (too minor to require h5committest)
* [svn-r24101] Description:Quincey Koziol2013-09-051-15/+11
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up warnings, enable new compiler warning flag(s) and bring back changes from Coverity branch: r20813: Remove the dead code as listed for coverity bug #1722. h5committested. r20814: Issue 69: Check return value and throw error if negative return. Also free datatype id on error r20815: Use HDstrncpy. --gh r20816: Replaced one last HDstrcat call with HDstrncat to resolve coverity issue 832. r20817: Use HDstrncpy and HDstrncat. --gh r20818: Purpose: Fix valgrind issues with h5jam Description: Modified h5jam to free strings strdup'd in parse_command_line before exit. Note that they may still not be freed in case of error, due to the widespread use of exit(). r20819: Issue 80: change loop to use int as loop index. r20820: Maintenance: Fixed the bug found by coverity CID 788 There were two problems with this function: 1) it tried to unnecessary free NULL pointer 2) it tried to allocate c_name buffer that is done by H5Pget_class_name Tested on: Mac OSX 10.8.4 (amazon) w/gcc 4.8.1, C++ & FORTRAN (too minor to require h5committest)
* [svn-r23325] DescriptionScot Breitenfeld2013-03-051-18/+20
| | | | | | | | | | | ------------ Fix for: HDFFV-8149: h5pset_external_f API - the offset is declared integer which can cause problem if use 64-bit integer Added new type off_t, modified source files and added a new test. Tested (jam, intel, gnu)
* [svn-r21248] Mereged the F2003 branch into the trunk.Scot Breitenfeld2011-08-181-1137/+2188
| | | | | | | | | Items merged: fortran directory, src/libhdf5.settings.in configure.in configure MANIFEST Tested: (all platforms used by daily tests, both with --enable-fortran and --enable-fortran2003)
* [svn-r21028] Description: Scot Breitenfeld2011-06-241-1/+1
| | | | | | | | Changed the length of the fortran string passed to HD5packFstring in the function nh5pget_external_c. The 3rd argument should be the fortran length of the string, not the C length of the string (which includes the null). Tested: jam (intel and gnu), also checked the example h5ex_d_extern.f90 which detected the problem on Amazon c2 machine (reported by Larry).
* [svn-r19654] Description:Quincey Koziol2010-10-211-64/+61
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring Coverity revisions from branch back to trunk, and clean up some other misc. compiler warnings also. r19500: Fix coverity items 1446 and 1447. Moved up calls to memset in test_cont in ohdr.c so the test never tries to close uninitialized locations. r19501: Fix coverity items 1398-1445. Various uninitialized variable errors in fheap.c. r19502: Fixed coverity issue 579 and some additional warnings in the file as well. r19503: Bug fix: This fix addressed the "RESOURCE_LEAK" problems #789 and 790, run 26 r19504: minor mods to try to keep coverity from flagging false positives. r19505: Fixed coverity issues 566 - 571. Declared variables that are passed to functions that use them as arrays to be arrays of size 1. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug, production & parallel (h5committested on trunk)
* [svn-r18197] Description:Quincey Koziol2010-01-301-6/+6
| | | | | | | | | Trim trailing whitespace from source code files with this command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r18157] Description:Quincey Koziol2010-01-231-72/+83
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring back changes from Coverity session on 1/15/10: r18111: Fix Coverity issue #130: make certain that the cache gets freed on error. r18112: Fix Coverity issue #43 by making cache testing calls protected by 'pass' variable. r18113: Fix Coverity issue #129 by releasing the cache on error. r18115: Coverity #45 fix: patched an error check in H5Screate_simple to prevent future dereferencing of a NULL point. Added a verification in test/th5s.c. r18116: Fix Coverity issue #43 by releasing cache on error. r18117: Coverity #362,363 by adding HGOTO_DONE, freeing allocations and associated changes. REsolving coverity results #364-368, 369, 370-372, 377, 379, and 380. r18118: Fix Coverity issue #42: assert that cache & test specification pointer are valid. r18122: Coverity #362,363 by adding HGOTO_DONE and freeing allocations. This also takes care of #357,358. r18123: Coverity #359-361, 373-376: Added HGOTO_DONE(FAIL) statement after checking allocation for NULL. Verified allocation is freed in done block. r18128: Fixed coverity issue #10 -- removed dead code. Tested on: Mac OS X/32 10.6.2 (amazon)
* [svn-r17582] Description:Quincey Koziol2009-10-021-3/+11
| | | | | | | | | | | | | | | | | | | | | Bring changes from file free space branch back to the trunk. *yay!* Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16777] Description:Scot Breitenfeld2009-04-171-0/+67
| | | | | | | | | | | Added APIs: H5P_H5PSET_CHUNK_CACHE_F H5P_H5PGET_CHUNK_CACHE_F Platforms tested: smirom: pgf90 ifort
* [svn-r16362] Description:Scot Breitenfeld2009-01-271-5/+13
| | | | | | | | | | | | | *Fixed cd_nelements in nh5pget_filter_c - cd_nelments not pased in or returned correctly. Since cd_nelmts has IN/OUT attributes, fixed the input and returned value of cd_nelmnts to satisfy this specification. *Fixed 'name' returned in nH5Pget_external_c - if the size of the fortran buffer is larger then the returned string from the function then we need to give HD5packFstring the fortran buffer size so that it fills the remaining unused characters with blanks. Found with the gfortran compiler. Platforms tested: smirom, liberty
* [svn-r15628] Description:Quincey Koziol2008-09-161-45/+45
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15462] Description:Quincey Koziol2008-08-121-2/+2
| | | | | | | | Correct compiler warnings from Visual Studio. Tested on: Mac OS X/32 10.5.4 (amazon) w/FORTRAN & C++ (Too minor to require full h5committest)
* [svn-r15183] Purpose: _WIN32 macro cleanupScott Wegner2008-06-091-4/+0
| | | | | | | | | | Description: As part of our Windows cleanup, we try to remove windows-specific tweaks in the source code. There are many instances where Windows code is introduces via ifdef's. We re-evaluate whether they are still required, and found that many of them are not. Others we change to "feature"-specific code, rather than Windows-specific. Tested: VS2005 on WinXP VS.NET on WinXP h5committest (kagisopp, smirom, linew)
* [svn-r14960] Maintenance: IRIX compiler exposed a problem in one of the new ↵Elena Pourmal2008-05-091-1/+4
| | | | | | APIs. Fixed. Platforms tested: kagiso and UCAR IRIX machine.
* [svn-r14923] Maintenance: This check-in merges changes from the fortran_1_8 ↵Elena Pourmal2008-05-031-8/+1026
| | | | | | | branch back into the trunk (up to revision 14921) Platforms tested: kagiso with g95 and Intel compilers; more testing will be done after checking in a fresh copy from the trunk. New code itself was tested with all Fortran compilers available at THG
* [svn-r14903] Undoing change committed in r14902.Scot Breitenfeld2008-04-301-1026/+8
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* [svn-r14902] Merged fortran_1_8 branch changes r14505:14901 into the trunk. ↵Scot Breitenfeld2008-04-301-8/+1026
| | | | New fortran wrappers added.
* [svn-r14208] Description:Quincey Koziol2007-10-181-30/+24
| | | | | | | | | | | | | | | | | | | | Make H5Pget_filter_by_id() API versioned and switch internal usage to H5Pget_filter_by_id2(). Add simple regression test for H5Pget_filter_by_id1(). Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14206] Description:Quincey Koziol2007-10-171-39/+31
| | | | | | | | | | | | | | | | | | | | Make H5Pget_filter API versioned and switch internal usage to H5Pget_filter2. Add regression test for H5Pget_filter1. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14204] Description:Quincey Koziol2007-10-121-11/+9
| | | | | | | | | | | | | | | | | | | | | | Move H5Pinsert() out of old "compat v1.6" section and into API versioning, switching internal usage to H5Pinsert2(). Add regression test for H5Pinsert1() Clean up some other minor warnings. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14202] Description:Quincey Koziol2007-10-111-11/+9
| | | | | | | | | | | | | | | | | | | | | | Move H5Pregister our of old "compat v1.6" section and add it to the versioned symbols. Add simple regression test for H5Pregister1() Split H5P.c source file into H5P/H5Pint/H5Pdeprec files. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r13766] In Visual Studio 2005 for 64-bit, _WIN32 is defined, but not ↵Scott Wegner2007-05-181-2/+2
| | | | | | | WIN32, so I've standardized all #ifdef's to use _WIN32. This should not affect any other platform. Tested: Visual Studio (32- and 64-bit) on Win XP
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12842] Description:Quincey Koziol2006-11-021-4/+4
| | | | | | | | | | | | | | | | Refactor generic property list initialization code to put property list specific routines in property list modules, instead of scattered to the four winds. Also, introduce property list class initialization objects, to make adding new property list classes in the library easier. Fix daily test failure by using H5Pget_elink_prefix() API routine instead of looking at the "raw" generic property list information. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & 1.6 compat
* [svn-r12752] Descripton: This is a port to G95 compiler for MAC OSX and AIX 5.2Elena Pourmal2006-10-121-29/+194
| | | | | | | | | | | | | | | | Previous implementation failed to compile on MAC OS X Tiger 10.4 and AIX 5.2 In previous implementation, each overloaded Fortran function called the same C function. Since declaration of parameters in INTERFACE block for C Function differed, some compilers issued warnings but g95 on MAC and AIX failed to compile. Solution: Add C wrappers corresponding to each overloaded Fortran function to call C stub function. This fix should also reduce number of warnings on IRIX systems. Platforms tested: MAC OS and AIX 5.2 (copper) with g95; sol (with Sun compilers), heping with PGI compilers
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