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* Develop clang 13 format (#1933)Allen Byrne2022-07-261-1/+1
| | | | | * Update format source to clang 13 * More format changes
* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-071-4/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Update license url part2 (#333)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Clang-format of source filesAllen Byrne2020-09-301-478/+509
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* Updated configure & CMake compiler flags for GCC 8.x, along with correspondingQuincey Koziol2019-06-281-5/+4
| | | | | changes to warnhist script (and some extra improvements for condensing C++ and Java warnings), and fixed a bunch of warnings.
* New hyperslab selection routines and new public selection iterator routines.Quincey Koziol2019-06-161-0/+159
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* HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change.Vailin Choi2019-04-061-3/+3
| | | | This also addresses HDFFV-10255: H5Sencode/decode performance issue.
* More changes to align with incoming selection improvements.Quincey Koziol2019-02-141-161/+0
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* [svn-r29946] comment cleanup/reformattingScot Breitenfeld2016-05-181-57/+51
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* [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk.Scot Breitenfeld2015-08-111-277/+277
| | | | Tested: h5committest --PASSED--
* [svn-r27489] reverted merge of branchScot Breitenfeld2015-08-111-277/+277
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* [svn-r27379] formatting clean-upScot Breitenfeld2015-07-141-2/+2
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* [svn-r27377] Cleaned-up comment formatting:Scot Breitenfeld2015-07-141-244/+244
| | | | sed -e 's/^ \*[ ]*\([A-Z]\)\([a-z]\)/ * \1\2/g' H5Zf.c | sed -e 's/^ \*[ ]*\([a-z]\)/ * \1/g' | sed -e 's/^ \*[ ]*\([0-9]\)/ * \1/g'
* [svn-r26831] Added H5S BIND(C)Scot Breitenfeld2015-04-171-31/+31
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* [svn-r26481] Removed compiler warnings. HDF5-239Scot Breitenfeld2015-03-191-13/+8
| | | | Tested: h5committest.
* [svn-r25766] Description:Quincey Koziol2014-11-031-6/+8
| | | | | | | | | | Revert r25273, 25283 & 25439 (the hyperslab improvement changes). They are buggy and it's taking me a long time to correct the problem. I'll check in a revised form of the changes when I've got them straightened out. Tested on: Mac OSX 10.10.0 (amazon) w/gcc 4.9.x, C++, FORTRAN Linux 2.6.x (jam) w/parallel
* [svn-r25707] Added missing type cast for hid_t_f ids.Scot Breitenfeld2014-10-151-23/+23
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* [svn-r25283] Description:Quincey Koziol2014-06-141-5/+5
| | | | | | | | | | Correct error in new hyperslab selection test to use the right # of dimensions for start/stride/count/block arrays. Also, switch H5Sselect_select to H5Smodify_select. Tested on: MacOSX/64 10.9.3 (amazon) w/gcc 4.9.1, OpenMPI, C++, FORTRAN & threadsafe (Too minor to require h5committest)
* [svn-r25273] Description:Quincey Koziol2014-06-131-3/+1
| | | | | | | | | | | Bring in Chao/Neil/my changes to optimize hyperslab selection operations further, along with 3 new public API routines: H5Scombine_hyperslab(), H5Sselect_select() and H5Scombine_select(), along with many minor cleanups to the code and fixing a few compiler warnings. Tested on: Mac OSX/64 10.9.3 w/gcc 4.9.x and parallel w/OpenMPI (h5commttest forthcoming)
* [svn-r24866] Fixed compiler warnings using gnu 4.8.1 Scot Breitenfeld2014-03-221-1/+1
| | | | Tested: jam( intel, gnu, pgi)
* [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.Dana Robinson2013-10-311-2/+2
| | | | | | | | | | | | | Prep work for adding a memory free function, part of HDFFV-8551. Tested on: 32-bit LE linux (jam) * with C++, Fortran * with thread safety on These are minor changes (almost entirely renaming foo functions to HDfoo) that don't change functionality. This should not require a full commit test.
* [svn-r21248] Mereged the F2003 branch into the trunk.Scot Breitenfeld2011-08-181-274/+550
| | | | | | | | | Items merged: fortran directory, src/libhdf5.settings.in configure.in configure MANIFEST Tested: (all platforms used by daily tests, both with --enable-fortran and --enable-fortran2003)
* [svn-r19654] Description:Quincey Koziol2010-10-211-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring Coverity revisions from branch back to trunk, and clean up some other misc. compiler warnings also. r19500: Fix coverity items 1446 and 1447. Moved up calls to memset in test_cont in ohdr.c so the test never tries to close uninitialized locations. r19501: Fix coverity items 1398-1445. Various uninitialized variable errors in fheap.c. r19502: Fixed coverity issue 579 and some additional warnings in the file as well. r19503: Bug fix: This fix addressed the "RESOURCE_LEAK" problems #789 and 790, run 26 r19504: minor mods to try to keep coverity from flagging false positives. r19505: Fixed coverity issues 566 - 571. Declared variables that are passed to functions that use them as arrays to be arrays of size 1. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug, production & parallel (h5committested on trunk)
* [svn-r18197] Description:Quincey Koziol2010-01-301-7/+7
| | | | | | | | | Trim trailing whitespace from source code files with this command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r18157] Description:Quincey Koziol2010-01-231-193/+141
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring back changes from Coverity session on 1/15/10: r18111: Fix Coverity issue #130: make certain that the cache gets freed on error. r18112: Fix Coverity issue #43 by making cache testing calls protected by 'pass' variable. r18113: Fix Coverity issue #129 by releasing the cache on error. r18115: Coverity #45 fix: patched an error check in H5Screate_simple to prevent future dereferencing of a NULL point. Added a verification in test/th5s.c. r18116: Fix Coverity issue #43 by releasing cache on error. r18117: Coverity #362,363 by adding HGOTO_DONE, freeing allocations and associated changes. REsolving coverity results #364-368, 369, 370-372, 377, 379, and 380. r18118: Fix Coverity issue #42: assert that cache & test specification pointer are valid. r18122: Coverity #362,363 by adding HGOTO_DONE and freeing allocations. This also takes care of #357,358. r18123: Coverity #359-361, 373-376: Added HGOTO_DONE(FAIL) statement after checking allocation for NULL. Verified allocation is freed in done block. r18128: Fixed coverity issue #10 -- removed dead code. Tested on: Mac OS X/32 10.6.2 (amazon)
* [svn-r15744] Description:Scot Breitenfeld2008-10-011-5/+0
| | | | Removed extraneous comments and unused code.
* [svn-r15690] Description:Scot Breitenfeld2008-09-241-3/+5
| | | | In nH5Sget_select_bounds_c swapped array bounds to account for C and Fortran reversed array notation.
* [svn-r15687] Description:Scot Breitenfeld2008-09-231-10/+42
| | | | | | | | Fixed nh5sget_select_hyper_blocklist_c nh5sget_select_elem_pointlist_ for bug 1319. by transposing arrays for C-FORTRAN convention.
* [svn-r15628] Description:Quincey Koziol2008-09-161-6/+6
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r14928] Maintenance: Cleaned up the code to make it compile on smirom ↵Elena Pourmal2008-05-041-2/+2
| | | | | | | | with the g95 compiler Platforms tested: kagiso with PGI compilers, linew, smirom with GCC and g95 compilers; some tests and function calls are commented out with !EP string; we will be working on it.
* [svn-r14923] Maintenance: This check-in merges changes from the fortran_1_8 ↵Elena Pourmal2008-05-031-0/+124
| | | | | | | branch back into the trunk (up to revision 14921) Platforms tested: kagiso with g95 and Intel compilers; more testing will be done after checking in a fresh copy from the trunk. New code itself was tested with all Fortran compilers available at THG
* [svn-r14903] Undoing change committed in r14902.Scot Breitenfeld2008-04-301-124/+0
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* [svn-r14902] Merged fortran_1_8 branch changes r14505:14901 into the trunk. ↵Scot Breitenfeld2008-04-301-0/+124
| | | | New fortran wrappers added.
* [svn-r14420] Description:Quincey Koziol2008-01-151-1/+1
| | | | | | | | Correct the prototype for H5Sselect_elements() to take an 'hsize_t *' for the coordinates, instead of 'hsize_t **'. Tested on: Mac OS X/32 10.5.1 (amazon)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r11779] Purpose:Quincey Koziol2005-12-091-2/+2
| | | | | | | | | | | | Bug fix Description: Change unsigned index variable to signed index variable (again), to fix error introduced with last Windows warnings cleanup. Platforms tested: Linux 2.4 (heping) w/FORTRAN Too minor to require h5committest
* [svn-r11771] Purpose:Quincey Koziol2005-12-081-1/+2
| | | | | | | | | | | | Code cleanup Description: Fix a bunch of warnings flagged by Windows compilers. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-129/+129
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-19/+19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r8538] Purpose: Add null dataspace for fortran.Raymond Lu2004-05-181-1/+2
| | | | Platforms tested: verbena pgf90(only fortran is concerned)
* [svn-r7611] Purpose:Quincey Koziol2003-10-131-3/+4
| | | | | | | | | | | | Code cleanup Description: Cleaned up various compiler warnings Platforms tested: FreeBSD 4.9 (sleipnir) Linux 2.4 (verbena) w/FORTRAN too minor for h5committest
* [svn-r7529] Purpose: Code cleanupElena Pourmal2003-10-011-24/+24
| | | | | | | | | | | | | Description: On Linux systems valdrind tool complained about memroy leaks in the following statements like if(!a) free(a); Solution: replaced the statements with if ( a != NULL) free(a); Platforms tested: eirene (too small for committest) Misc. update:
* [svn-r7341] Purpose:Albert Cheng2003-08-111-0/+14
| | | | | | | | | Updated, cleanup or added Copyright notice. Platforms tested: "h5committested" Misc. update:
* [svn-r6950] Purpose:Quincey Koziol2003-06-041-6/+6
| | | | | | | | | | | | | | | | | | | | | | API tweak. Description: The H5Sget_select_bounds() API call was using hsize_t arrays for retrieving the 'start' and 'end' coordinates, which is counter to the rest of the dataspace API. Solution: Change the arrays to be hssize_t instead. Platforms tested: FreeBSD 4.8 (sleipnir) w/C++ FreeBSD 4.8 (sleipnir) w/parallel h5committested Misc. update: Updated all docs for this change. Added 1.4 compatibility #ifdef's
* [svn-r6684] Elena Pourmal2003-04-151-21/+2
| | | | | | | | | | | | | | | | | | | Purpose: Added copyright statement; cleaned code and fixed bugs for Windows and Cray T90IEEE Description: Fortran files did not have copyright statement; VL types did not work on T90IEEE since I never brought the correct code from 1.4 branch; there were compilation warnings on Windows; some character parameters were not passed correctly to C stubs causing tests to fail on Windows. Solution: Added copyright statement and clean the code. Platforms tested: CRAY T90IEEE, arabica, modi4 with parallel, Windows 2000 Only static tests (both debug and release) passed on Windows. DLLs have multiple problems ;-) Misc. update:
* [svn-r6464] Elena Pourmal2003-03-051-27/+175
| | | | | | | | | | | | | | | | | | Purpose: Maintenance Description: * Added support for generic properties. * Added support for time allocation properties. * Added support for variable length datatypes (only datatypes based on INTEGER, REAL and CHARACTER Fortran types are supported). * added some missing functions Solution: I am checking in new Fortran APIs and their man pages to support 1.5 features listed above. Not all APIs have tests yet. APIs were written in Fall 2002, and I am afraid that I will loose the code or totally forget what I did if I wait longer. ;-) Platforms tested: arabica (fortran), eirene (fortran), modi4 (parallel, fortran)
* [svn-r2795] Elena Pourmal2000-11-031-4/+12
| | | | | | | | | | | | | | | | | | | Purpose: New feature Description: Now all Fortran flags such as H5F_ACC_RDONLY_F (previously defined in the H5fortran_flags.f90 file) are generated at runtime when h5init_fortran_f subroutine is called. All flags have now the same value as corresponding C flags. This change affects user's programming model: Every Fortran program that uses F90 HDF5 Library has to call h5init_fortran_f(error) subroutine before the first call to the F90 HDF5 Library and h5close_fortran_f(error) after the last call to the Library. h5init(close)_types_f calls are not needed anymore since F90 datatypes are intialized(closed) with the h5init(close)_fortran_f calls. Platforms tested: O2K and Solaris2.7
* [svn-r2576] Purpose:Bill Wendling2000-09-191-0/+874
Adding the Fortran interface to the HDF5 library Description: Fortran is now a subdirectory of the HDF5 library tree. Platforms tested: Solaris and IRIX (O2K)
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